DY271159

Overview
NameDY271159
Unique NameDY271159
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length955
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY271159 vs. ExPASy Swiss-Prot
Match: Y1686_ARATH (Uncharacterized membrane protein At1g16860 OS=Arabidopsis thaliana GN=At1g16860 PE=1 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 2.728e-68
Identity = 135/188 (71.81%), Postives = 146/188 (77.66%), Query Frame = 2 
Query:  212 MGSRFPSHQLSNGLYVSGRPEQPKERTPTMSSVAMPYTGGDIKKSGELGKMFDIPVDGSKSRKSGPINNAPSRTGSFGGAASHSGPIMPNAASRXXXXXXXXXXXXXXXXXXXLKKSNSGPLNKHGEPLKKSSGPQSGGVTPSGRQNSGPLAPALPTTGLITSGPISSAPLNSSGAPRKVSGSLDSMG 775
            MGSR+PSHQLSNGL+VSGRPEQPKER PTMS+VAMPYTGGDIK+SGELGKMFDIP DG+KSRKSGPI  APSR+GSF G A  SGP  P A  R                   +KK+NSGPL+KHGEPLKKSSGPQSGGVT   RQNSG + P LP TGLITSGPI+S PLNSSGAPRKVSG LDS G
Sbjct:    1 MGSRYPSHQLSNGLFVSGRPEQPKERAPTMSAVAMPYTGGDIKRSGELGKMFDIPADGTKSRKSGPIPGAPSRSGSFAGTA-QSGPGAPMATGR-------MSGSLASAGSVSMKKTNSGPLSKHGEPLKKSSGPQSGGVT---RQNSGSI-PILPATGLITSGPITSGPLNSSGAPRKVSGPLDSSG 176

HSP 2 Score: 28.4906 bits (62), Expect = 2.728e-68
Identity = 19/55 (34.55%), Postives = 27/55 (49.09%), Query Frame = 1 
Query:  772 GIQ*KYQAPVPQIRASLVLAQEEDFDFQKNFPKPIIPGL*FPFLVMGIKRPGGFI 936
            G+   +   V   +A   L  E+DF   K+FPKP++  L     +MG    GGFI
Sbjct:  176 GLMKSHMPTVVHNQAVTTLGPEDDFSCLKSFPKPVL-WLVVLIFIMGF-LAGGFI 228
The following BLAST results are available for this feature:
BLAST of DY271159 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y1686_ARATH2.728e-6871.81Uncharacterized membrane protein At1g16860 OS=Arab... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP9YA15FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271159 ID=DY271159; Name=DY271159; organism=Citrus clementina; type=EST; length=955bp
CACTCCCCATTTTCTAGTGAGAGAAACAGCAAAAGATGTCTCCAAATTTT
CAGATTTCTTCTTCTTCTTCTTCTTCTTCTTCTGCTGCTACTACTGGTAC
TGCTATAGTCCTGCTACTACTACTTTAACTGGTGAGCTGTGAAAATCGCA
TCAGCATTCTGTGAGTGGTCTTTGGTTTGTGGTACTGTGTGGAGTCTTAT
AGAGTAGCAAGATGGGTTCCAGGTTCCCATCTCATCAGCTCAGCAATGGC
CTTTACGTATCAGGCCGGCCAGAGCAACCCAAAGAAAGGACACCAACAAT
GAGCTCAGTAGCCATGCCTTATACTGGAGGCGATATAAAAAAATCCGGAG
AGCTAGGGAAAATGTTTGATATTCCTGTTGACGGTTCCAAGTCTAGGAAG
TCTGGACCTATAAATAATGCTCCTTCAAGGACTGGATCTTTTGGTGGTGC
TGCTTCACATTCAGGACCTATCATGCCTAATGCTGCCTCTAGGGCTAGCT
ACTCAACGTCAGGTCCTGTCTCTTCTGGAGTCACGTCTGGTTCAGCTTCA
TTAAAGAAGTCAAATTCTGGACCACTTAATAAACATGGGGAACCATTAAA
GAAGTCTTCCGGTCCTCAATCTGGAGGAGTGACACCAAGTGGCCGCCAAA
ACTCTGGCCCCCTTGCTCCTGCTCTTCCTACTACTGGTCTCATTACTTCT
GGACCCATCTCTTCAGCCCCACTTAATTCATCTGGGGCCCCAAGGAAGGT
GTCCGGGTCTTTGGACTCCATGGGATCCAATGAAAATACCAAGCTCCTGT
CCCTCAAATCAGGGCCTCCCTGGTCCTAGCCCAAGAAGAGGACTTTGACT
TCCAGAAGAATTTCCCCAAGCCCATAATTCCGGGTCTTTAATTCCCCTTT
TTGGTTATGGGAATTAAAAGGCCGGGGGGTTTTATTCCATGGAGCCAGTT
CCACA
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