DY271168

Overview
NameDY271168
Unique NameDY271168
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length953
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271168 vs. ExPASy Swiss-Prot
Match: ARFD_ARATH (Auxin response factor 4 OS=Arabidopsis thaliana GN=ARF4 PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 7.397e-40
Identity = 109/271 (40.22%), Postives = 137/271 (50.55%), Query Frame = 1
Query:   16 LGFEMRAPAHQSLALNGIRKDNINELVRARPTS--YTGFVESNRFPKVLQGQEICPLRSLTGKVDLNLGTWGKPNFGCNSMNMYQASKPNIYPPPSESLSNMFFPYGDMPKTVQHHTMRPYASNLQRENVKLNSSSIQMPAIGAEIRKENLLNEHKPVENIPTPT-FKANMTSHKDGSF--NGTAAGCKLFGFXXXXXXXXXXXXXXGKRSCTKVHKQGSLVGRAIDLSRLNGYNDLLSELEHLFNMESLLRDPAKGWRILYTHSENDVMV 813
            L F M++ A+  L  + + KD   E V A   +   +G ++ +RFP+VLQGQEIC L+S       +      P         YQA+K + YP     + +   PY             PY +  Q       + +      G E RK +  NE     N+     FK +M   + GS      ++GCKLFGF               KR CTKVHKQGS VGRAIDLSRLNGY+DLL ELE LFNME LLRDP KGWRILYT SEND+MV
Sbjct:  480 LDFAMQSHANPVLVSSRV-KDRFGEFVDATGVNPACSGVMDLDRFPRVLQGQEICSLKSFPQFAGFSPAAAPNPF-------AYQANKSSYYPLALHGIRSTHVPY-----------QNPYNAGNQSSGPPSRAINF-----GEETRKFDAQNEGGLPNNVTADLPFKIDMMGKQKGSELNMNASSGCKLFGFSLPVETPASKPQSSSKRICTKVHKQGSQVGRAIDLSRLNGYDDLLMELERLFNMEGLLRDPEKGWRILYTDSENDMMV 726          

HSP 2 Score: 27.7202 bits (60), Expect = 7.397e-40
Identity = 11/26 (42.31%), Postives = 19/26 (73.08%), Query Frame = 3
Query:  813 LLGMIPWHEFRNGVFQNPIQTQEEME 890
            ++G  PWH+F N V++  + T+EE+E
Sbjct:  726 VVGDDPWHDFCNVVWKIHLYTKEEVE 751          
BLAST of DY271168 vs. ExPASy Swiss-Prot
Match: ARFX_ORYSJ (Auxin response factor 24 OS=Oryza sativa subsp. japonica GN=ARF24 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.327e-13
Identity = 27/62 (43.55%), Postives = 44/62 (70.97%), Query Frame = 1
Query:  628 RSCTKVHKQGSLVGRAIDLSRLNGYNDLLSELEHLFNMESLLRDPAKGWRILYTHSENDVMV 813
            RSC KVHKQG  +GR+IDL++   Y++L++EL+ +F+    L   +K W ++YT +E D+M+
Sbjct:  713 RSCKKVHKQGIALGRSIDLTKFTCYDELIAELDQMFDFNGELNSSSKNWMVVYTDNEGDMML 774          

HSP 2 Score: 29.261 bits (64), Expect = 4.327e-13
Identity = 14/28 (50.00%), Postives = 20/28 (71.43%), Query Frame = 3
Query:  813 LLGMIPWHEFRNGVFQNPIQTQEEMEKM 896
            L+G  PW+EF N V +  I T+EE++KM
Sbjct:  774 LVGDDPWNEFCNMVHKIFIYTREEVQKM 801          
BLAST of DY271168 vs. ExPASy Swiss-Prot
Match: ARFA_ARATH (Auxin response factor 1 OS=Arabidopsis thaliana GN=ARF1 PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 7.341e-13
Identity = 32/62 (51.61%), Postives = 45/62 (72.58%), Query Frame = 1
Query:  628 RSCTKVHKQGSLVGRAIDLSRLNGYNDLLSELEHLFNMESLLRDPAKGWRILYTHSENDVMV 813
            RSCTKVH QGS VGRAIDL+R   Y DL  +LE +F+++  L +  K W+++YT  E+D+M+
Sbjct:  542 RSCTKVHMQGSAVGRAIDLTRSECYEDLFKKLEEMFDIKGELLESTKKWQVVYTDDEDDMMM 603          

HSP 2 Score: 23.483 bits (49), Expect = 7.341e-13
Identity = 11/29 (37.93%), Postives = 19/29 (65.52%), Query Frame = 3
Query:  813 LLGMIPWHEFRNGVFQNPIQTQEEMEKMT 899
            ++G  PW+EF   V +  I T EE++K++
Sbjct:  603 MVGDDPWNEFCGMVRKIFIYTPEEVKKLS 631          
BLAST of DY271168 vs. ExPASy Swiss-Prot
Match: ARFD_ORYSJ (Auxin response factor 4 OS=Oryza sativa subsp. japonica GN=ARF4 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 9.486e-13
Identity = 29/62 (46.77%), Postives = 45/62 (72.58%), Query Frame = 1
Query:  628 RSCTKVHKQGSLVGRAIDLSRLNGYNDLLSELEHLFNMESLLRDPAKGWRILYTHSENDVMV 813
            RSCTKVHKQG  +GR++DLS+ + Y++L +EL+ +F  +  L    K W+I+YT +E D+M+
Sbjct:  692 RSCTKVHKQGVALGRSVDLSKFSNYDELKAELDKMFEFDGELVSSNKNWQIVYTDNEGDMML 753          

HSP 2 Score: 26.1794 bits (56), Expect = 9.486e-13
Identity = 13/28 (46.43%), Postives = 19/28 (67.86%), Query Frame = 3
Query:  813 LLGMIPWHEFRNGVFQNPIQTQEEMEKM 896
            L+G  PW EF + V +  I T+EE++KM
Sbjct:  753 LVGDDPWEEFCSIVRKIYIYTKEEVQKM 780          
BLAST of DY271168 vs. ExPASy Swiss-Prot
Match: ARFW_ORYSJ (Auxin response factor 23 OS=Oryza sativa subsp. japonica GN=ARF23 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 2.523e-12
Identity = 29/62 (46.77%), Postives = 46/62 (74.19%), Query Frame = 1
Query:  628 RSCTKVHKQGSLVGRAIDLSRLNGYNDLLSELEHLFNMESLLRDPAKGWRILYTHSENDVMV 813
            RSC KVHKQG  +GR++DL++ NGY +L++EL+ +F+    L+ P K W ++YT +E D+M+
Sbjct:  725 RSCKKVHKQGIALGRSVDLTKFNGYEELIAELDDMFDFNGELKGPKKEWMVVYTDNEGDMML 786          
BLAST of DY271168 vs. ExPASy Swiss-Prot
Match: ARFW_ORYSI (Auxin response factor 23 OS=Oryza sativa subsp. indica GN=ARF23 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.523e-12
Identity = 29/62 (46.77%), Postives = 46/62 (74.19%), Query Frame = 1
Query:  628 RSCTKVHKQGSLVGRAIDLSRLNGYNDLLSELEHLFNMESLLRDPAKGWRILYTHSENDVMV 813
            RSC KVHKQG  +GR++DL++ NGY +L++EL+ +F+    L+ P K W ++YT +E D+M+
Sbjct:  725 RSCKKVHKQGIALGRSVDLTKFNGYEELIAELDDMFDFNGELKGPKKEWMVVYTDNEGDMML 786          
BLAST of DY271168 vs. ExPASy Swiss-Prot
Match: ARFB_ARATH (Auxin response factor 2 OS=Arabidopsis thaliana GN=ARF2 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 2.523e-12
Identity = 32/62 (51.61%), Postives = 43/62 (69.35%), Query Frame = 1
Query:  628 RSCTKVHKQGSLVGRAIDLSRLNGYNDLLSELEHLFNMESLLRDPAKGWRILYTHSENDVMV 813
            RSCTKVHKQG  +GR++DLS+   Y +L++EL+ LF     L  P K W I+YT  END+M+
Sbjct:  733 RSCTKVHKQGIALGRSVDLSKFQNYEELVAELDRLFEFNGELMAPKKDWLIVYTDEENDMML 794          
BLAST of DY271168 vs. ExPASy Swiss-Prot
Match: ARFI_ORYSJ (Auxin response factor 9 OS=Oryza sativa subsp. japonica GN=ARF9 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.252e-11
Identity = 32/62 (51.61%), Postives = 46/62 (74.19%), Query Frame = 1
Query:  628 RSCTKVHKQGSLVGRAIDLSRLNGYNDLLSELEHLFNMESLLRDPAKGWRILYTHSENDVMV 813
            RSCTKV  QG  VGRA+DL++LNGY DL S+LE +F+++  L    K W+++YT  E+D+M+
Sbjct:  547 RSCTKVIMQGMAVGRAVDLTKLNGYGDLRSKLEEMFDIQGDLCPTLKRWQVVYTDDEDDMML 608          
BLAST of DY271168 vs. ExPASy Swiss-Prot
Match: ARFG_ORYSJ (Auxin response factor 7 OS=Oryza sativa subsp. japonica GN=ARF7 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.789e-11
Identity = 31/62 (50.00%), Postives = 46/62 (74.19%), Query Frame = 1
Query:  628 RSCTKVHKQGSLVGRAIDLSRLNGYNDLLSELEHLFNMESLLRDPAKGWRILYTHSENDVMV 813
            RSCTKV  QG  VGRA+DL+RL+GY+DL  +LE +F+++  L    K W+++YT  E+D+M+
Sbjct:  548 RSCTKVIMQGMAVGRAVDLTRLHGYDDLRCKLEEMFDIQGELSASLKKWKVVYTDDEDDMML 609          
The following BLAST results are available for this feature:
BLAST of DY271168 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
ARFD_ARATH7.397e-4040.22Auxin response factor 4 OS=Arabidopsis thaliana GN... [more]
ARFX_ORYSJ4.327e-1343.55Auxin response factor 24 OS=Oryza sativa subsp. ja... [more]
ARFA_ARATH7.341e-1351.61Auxin response factor 1 OS=Arabidopsis thaliana GN... [more]
ARFD_ORYSJ9.486e-1346.77Auxin response factor 4 OS=Oryza sativa subsp. jap... [more]
ARFW_ORYSJ2.523e-1246.77Auxin response factor 23 OS=Oryza sativa subsp. ja... [more]
ARFW_ORYSI2.523e-1246.77Auxin response factor 23 OS=Oryza sativa subsp. in... [more]
ARFB_ARATH2.523e-1251.61Auxin response factor 2 OS=Arabidopsis thaliana GN... [more]
ARFI_ORYSJ1.252e-1151.61Auxin response factor 9 OS=Oryza sativa subsp. jap... [more]
ARFG_ORYSJ2.789e-1150.00Auxin response factor 7 OS=Oryza sativa subsp. jap... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP9YB02FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271168 ID=DY271168; Name=DY271168; organism=Citrus clementina; type=EST; length=953bp
ACTGTTAACCACCCTCTGGGTTTTGAAATGCGAGCACCCGCACATCAAAG
TCTTGCATTAAATGGAATCAGAAAGGATAATATTAATGAGCTTGTTAGAG
CTCGCCCCACCTCTTACACAGGCTTTGTGGAATCCAATAGGTTTCCAAAG
GTCTTGCAAGGTCAAGAAATATGCCCATTGAGATCCCTGACTGGAAAAGT
TGATCTCAATCTAGGCACTTGGGGAAAACCCAATTTTGGTTGCAATTCGA
TGAACATGTATCAAGCATCCAAGCCCAATATCTACCCTCCACCATCAGAA
AGCCTGTCAAATATGTTTTTCCCTTATGGTGATATGCCCAAAACTGTCCA
ACATCACACAATGCGCCCTTATGCTTCTAATCTCCAGAGAGAAAATGTTA
AACTCAACTCATCTTCTATCCAGATGCCAGCAATTGGAGCCGAAATTAGA
AAAGAAAATCTTCTGAACGAGCATAAGCCTGTGGAAAATATCCCTACACC
CACTTTCAAGGCAAATATGACGAGTCACAAAGATGGAAGCTTTAATGGGA
CAGCAGCTGGATGTAAGCTTTTTGGGTTCTCTCTGACTTCTGAAACACCT
ACTCCAAGCTCTCAAAGCCCTGGTAAGAGGAGTTGTACAAAGGTTCACAA
GCAAGGCAGCTTGGTTGGAAGAGCTATTGATCTCTCGAGACTGAATGGCT
ACAATGACCTGCTAAGTGAACTAGAGCACTTATTTAACATGGAAAGCCTT
TTACGAGATCCTGCTAAAGGATGGCGGATCTTGTACACCCACAGTGAGAA
TGATGTGATGGTTTGTTGGGGATGATCCCTTGGCATGAATTCCGTAATGG
GGTGTTCCAGAACCCTATCCAAACCCAAGAAGAAATGGAAAAAATGACCC
ATTGAACCCCCCAATAATACCCCAACCTCCTTGGACCAGCCCCCGGTAAT
AAA
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