DY271174

Overview
NameDY271174
Unique NameDY271174
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length974
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271174 vs. ExPASy Swiss-Prot
Match: FAD3D_ARATH (Temperature-sensitive omega-3 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD8 PE=2 SV=1)

HSP 1 Score: 271.166 bits (692), Expect = 6.532e-72
Identity = 115/134 (85.82%), Postives = 125/134 (93.28%), Query Frame = 1
Query:    1 GLPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWFNNIHHDIGTHVIHHLFPQIPHYHLIEATEAARPVLGKYYREPKKSGPIPFNLFGDLIRSMSKDHYVSDNGDVVYYQTDPQLNG 402
            G+PYWIFVMWLD VTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGW NNIHHDIGTHVIHHLFPQIPHYHL+EATEAA+PVLGKYYREPK SGP+P +L G LI+SM +DH+VSD GDVVYY+ DP+LNG
Sbjct:  299 GIPYWIFVMWLDFVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLVEATEAAKPVLGKYYREPKNSGPLPLHLLGSLIKSMKQDHFVSDTGDVVYYEADPKLNG 432          
BLAST of DY271174 vs. ExPASy Swiss-Prot
Match: FAD3C_RICCO (Omega-3 fatty acid desaturase, chloroplastic OS=Ricinus communis GN=FAD7A-1 PE=2 SV=1)

HSP 1 Score: 271.166 bits (692), Expect = 6.532e-72
Identity = 115/134 (85.82%), Postives = 125/134 (93.28%), Query Frame = 1
Query:    1 GLPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWFNNIHHDIGTHVIHHLFPQIPHYHLIEATEAARPVLGKYYREPKKSGPIPFNLFGDLIRSMSKDHYVSDNGDVVYYQTDPQLNG 402
            G+PYWIFVMWLD VTYLHHHGHEDKLPWYRGK WSYLRGGLTTLDRDYGW NNIHHDIGTHVIHHLFPQIPHYHL+EATEAA+PV+GKYYREPKKSGP+P +L G L+RSM +DHYVSD GDVVYYQ DP+L+G
Sbjct:  320 GIPYWIFVMWLDFVTYLHHHGHEDKLPWYRGKAWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLVEATEAAKPVMGKYYREPKKSGPLPLHLLGSLVRSMKEDHYVSDTGDVVYYQKDPKLSG 453          
BLAST of DY271174 vs. ExPASy Swiss-Prot
Match: FAD3C_SESIN (Omega-3 fatty acid desaturase, chloroplastic OS=Sesamum indicum GN=FAD7 PE=2 SV=1)

HSP 1 Score: 270.781 bits (691), Expect = 8.532e-72
Identity = 120/138 (86.96%), Postives = 127/138 (92.03%), Query Frame = 1
Query:    1 GLPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWFNNIHHDIGTHVIHHLFPQIPHYHLIEATEAARPVLGKYYREPKKSGPIPFNLFGDLIRSMSKDHYVSDNGDVVYYQTDPQLNGSSKS 414
            G+PY   VMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGW NNIHHDIGTHVIHHLFPQIPHYHLIEATEAA+PVLGKYYREPKKS P+PF+L GDL RS+ +DHYVSD GDVVYYQTDPQL G+ KS
Sbjct:  310 GIPYLGNVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEAAKPVLGKYYREPKKSAPLPFHLLGDLTRSLKRDHYVSDVGDVVYYQTDPQLTGAEKS 447          
BLAST of DY271174 vs. ExPASy Swiss-Prot
Match: FAD3C_SOYBN (Omega-3 fatty acid desaturase, chloroplastic OS=Glycine max GN=FAD7 PE=2 SV=1)

HSP 1 Score: 265.388 bits (677), Expect = 3.584e-70
Identity = 117/138 (84.78%), Postives = 127/138 (92.03%), Query Frame = 1
Query:    1 GLPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWFNNIHHDIGTHVIHHLFPQIPHYHLIEATEAARPVLGKYYREPKKS-GPIPFNLFGDLIRSMSKDHYVSDNGDVVYYQTDPQLNGSSK 411
            G+PY IFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGW NNIHHDIGTHVIHHLFPQIPHYHL+EATEAA+PV GKYYREPKKS  P+PF+L G++IRS   DH+VSD GDVVYYQTD ++NGSSK
Sbjct:  314 GVPYVIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLVEATEAAKPVFGKYYREPKKSAAPLPFHLIGEIIRSFKTDHFVSDTGDVVYYQTDSKINGSSK 451          
BLAST of DY271174 vs. ExPASy Swiss-Prot
Match: FAD3C_BRANA (Omega-3 fatty acid desaturase, chloroplastic (Fragment) OS=Brassica napus GN=FAD7 PE=2 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 1.841e-66
Identity = 110/136 (80.88%), Postives = 120/136 (88.24%), Query Frame = 1
Query:    4 LPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWFNNIHHDIGTHVIHHLFPQIPHYHLIEATEAARPVLGKYYREPKKSGPIPFNLFGDLIRSMSKDHYVSDNGDVVYYQTDPQLNGSSK 411
            +PYWI VMWLD VTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYG  NNIHHDIGTHVIHHLFPQIPHYHL+EATEAA+PVLGKYYREP KSGP+P +L G L +S+ +DH+VSD GDVVYY+ DP L G  K
Sbjct:  265 IPYWINVMWLDFVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGLINNIHHDIGTHVIHHLFPQIPHYHLVEATEAAKPVLGKYYREPDKSGPLPLHLLGILAKSIKEDHFVSDEGDVVYYEADPNLYGEIK 400          
BLAST of DY271174 vs. ExPASy Swiss-Prot
Match: FAD3C_ARATH (Omega-3 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD7 PE=1 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 4.101e-66
Identity = 110/137 (80.29%), Postives = 120/137 (87.59%), Query Frame = 1
Query:    1 GLPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWFNNIHHDIGTHVIHHLFPQIPHYHLIEATEAARPVLGKYYREPKKSGPIPFNLFGDLIRSMSKDHYVSDNGDVVYYQTDPQLNGSSK 411
            G+PYWI VMWLD VTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYG  NNIHHDIGTHVIHHLFPQIPHYHL+EATEAA+PVLGKYYREP KSGP+P +L   L +S+ +DHYVSD G+VVYY+ DP L G  K
Sbjct:  306 GIPYWINVMWLDFVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGLINNIHHDIGTHVIHHLFPQIPHYHLVEATEAAKPVLGKYYREPDKSGPLPLHLLEILAKSIKEDHYVSDEGEVVYYKADPNLYGEVK 442          
BLAST of DY271174 vs. ExPASy Swiss-Prot
Match: FAD3E_TOBAC (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Nicotiana tabacum GN=FAD3 PE=2 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 6.995e-66
Identity = 110/132 (83.33%), Postives = 121/132 (91.67%), Query Frame = 1
Query:    1 GLPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWFNNIHHDIGTHVIHHLFPQIPHYHLIEATEAARPVLGKYYREPKKSGPIPFNLFGDLIRSMSKDHYVSDNGDVVYYQTDPQL 396
            G PY IFVMWLD VTYLHHHG+E KLPWYRGKEWSYLRGGLTT+DRDYG FNNIHHDIGTHVIHHLFPQIPHYHL EAT+AA+PVLGKYYREPKKSGPIPF+L  DL RSM +DHYVSD+G++V+YQTDP +
Sbjct:  240 GAPYLIFVMWLDFVTYLHHHGYEKKLPWYRGKEWSYLRGGLTTVDRDYGLFNNIHHDIGTHVIHHLFPQIPHYHLREATKAAKPVLGKYYREPKKSGPIPFHLVKDLTRSMKQDHYVSDSGEIVFYQTDPHI 371          
BLAST of DY271174 vs. ExPASy Swiss-Prot
Match: FAD3E_SOYBN (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Glycine max GN=FAD3 PE=2 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 5.922e-65
Identity = 107/137 (78.10%), Postives = 120/137 (87.59%), Query Frame = 1
Query:    1 GLPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWFNNIHHDIGTHVIHHLFPQIPHYHLIEATEAARPVLGKYYREPKKSGPIPFNLFGDLIRSMSKDHYVSDNGDVVYYQTDPQLNGSSK 411
            G+PYWIFVMWLD VTYLHHHGH  KLPWYRGKEWSYLRGGLTT+DRDYGW  NIHHDIGTHVIHHLFPQIPHYHL+EAT+AA+PVLG YYREP++S P+PF+L   LI+SM +DH+VSD GDVVYYQTD  L  S +
Sbjct:  243 GIPYWIFVMWLDFVTYLHHHGHHQKLPWYRGKEWSYLRGGLTTVDRDYGWIYNIHHDIGTHVIHHLFPQIPHYHLVEATQAAKPVLGDYYREPERSAPLPFHLIKYLIQSMRQDHFVSDTGDVVYYQTDSLLLHSQR 379          
BLAST of DY271174 vs. ExPASy Swiss-Prot
Match: FAD3E_PHAAU (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Phaseolus aureus GN=ARG1 PE=2 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 2.250e-64
Identity = 104/136 (76.47%), Postives = 124/136 (91.18%), Query Frame = 1
Query:    1 GLPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWFNNIHHDIGTHVIHHLFPQIPHYHLIEATEAARPVLGKYYREPKKSGPIPFNLFGDLIRSMSKDHYVSDNGDVVYYQTDPQLNGSS 408
            G+PY IFVMWLD VTYLHHHG+  KLPWYRG+EWSYLRGGLTT+DRDYGW NN+HHDIGTHVIHHLFPQIPHYHL+EAT++A+ VLGKYYREP+KSGP+PF+L   L++S+S+DH+VSD GD+VYYQTDP+L+  S
Sbjct:  240 GVPYLIFVMWLDFVTYLHHHGYTHKLPWYRGQEWSYLRGGLTTVDRDYGWINNVHHDIGTHVIHHLFPQIPHYHLVEATKSAKSVLGKYYREPQKSGPLPFHLLKYLLQSISQDHFVSDTGDIVYYQTDPKLHQDS 375          
BLAST of DY271174 vs. ExPASy Swiss-Prot
Match: FAD3E_ARATH (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Arabidopsis thaliana GN=FAD3 PE=2 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 1.613e-62
Identity = 103/132 (78.03%), Postives = 118/132 (89.39%), Query Frame = 1
Query:    1 GLPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWFNNIHHDIGTHVIHHLFPQIPHYHLIEATEAARPVLGKYYREPKKSGPIPFNLFGDLIRSMSKDHYVSDNGDVVYYQTDPQL 396
            G+PY IFVMWLD VTYLHHHGH++KLPWYRGKEWSYLRGGLTT+DRDYG FNNIHHDIGTHVIHHLFPQIPHYHL++AT+AA+ VLG+YYREPK SG IP +L   L+ S+ KDHYVSD GD+V+Y+TDP L
Sbjct:  244 GVPYIIFVMWLDAVTYLHHHGHDEKLPWYRGKEWSYLRGGLTTIDRDYGIFNNIHHDIGTHVIHHLFPQIPHYHLVDATKAAKHVLGRYYREPKTSGAIPIHLVESLVASIKKDHYVSDTGDIVFYETDPDL 375          
The following BLAST results are available for this feature:
BLAST of DY271174 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
FAD3D_ARATH6.532e-7285.82Temperature-sensitive omega-3 fatty acid desaturas... [more]
FAD3C_RICCO6.532e-7285.82Omega-3 fatty acid desaturase, chloroplastic OS=Ri... [more]
FAD3C_SESIN8.532e-7286.96Omega-3 fatty acid desaturase, chloroplastic OS=Se... [more]
FAD3C_SOYBN3.584e-7084.78Omega-3 fatty acid desaturase, chloroplastic OS=Gl... [more]
FAD3C_BRANA1.841e-6680.88Omega-3 fatty acid desaturase, chloroplastic (Frag... [more]
FAD3C_ARATH4.101e-6680.29Omega-3 fatty acid desaturase, chloroplastic OS=Ar... [more]
FAD3E_TOBAC6.995e-6683.33Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3E_SOYBN5.922e-6578.10Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3E_PHAAU2.250e-6476.47Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3E_ARATH1.613e-6278.03Omega-3 fatty acid desaturase, endoplasmic reticul... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YB10FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271174 ID=DY271174; Name=DY271174; organism=Citrus clementina; type=EST; length=974bp
GGCCTTCCATATTGGATTTTTGTCATGTGGCTGGACCTTGTGACTTACTT
GCATCACCATGGGCATGAAGACAAACTTCCGTGGTATCGTGGAAAGGAAT
GGAGTTACTTAAGGGGAGGGCTCACAACACTTGATCGTGACTATGGATGG
TTCAATAACATCCACCACGATATTGGAACCCACGTCATACATCACCTCTT
CCCTCAGATCCCGCATTACCACTTAATAGAAGCAACTGAGGCTGCTAGAC
CAGTTCTTGGAAAATATTACCGTGAGCCAAAGAAATCGGGACCGATACCT
TTTAACCTTTTTGGAGATTTAATTAGAAGCATGAGTAAAGACCACTATGT
TAGTGACAATGGCGATGTTGTTTACTACCAGACCGACCCACAGCTTAACG
GCTCTTCAAAATCAGGGTAAAGCCGGCAAGCTTTCTTATCTTGAACCGGC
GTATTTAAATACCTTTAGCAATCCTTAAGCAGTCTTATAATCTACAATGA
TTTGACGATCCCCATTTCGGTACGGGATTCCCTATTTATTACAAGATGAA
TTGGCATCTAACAAAGATGATTGCGGCTGCTTCTTGAAATTAAGGCAGAA
TACATGAAAGTTTTCCACATTTGGAAGTAATTCTGAAGGGAAAATGTATA
TAATTCTTCCTGAAAAAGTAATATTCTCTTCAGCATAATTATTCATGTAT
TGTTTAAACCAAAACTTCCTATTTGAGGAAAAATAATGAGAAATTTTTGA
AAAAAAAAAAAAAAAAAAACCCCAATTTTTTTTGTAAAAGTTGGCCTTAA
AAAAAAGCTTTGCTTTTCATTTTTTTGGCACGAAACAGGGCCCTATCCAT
CAAAAAAAAATCCTTTTTTTCCCCCCCGCCAAAAACCCCCAATAAGGATC
TTAAATAAAGGGGCACAACTTTTTTCCGGGCCCCCTCTGGCCCCGGCTCC
AAAAATCCCTGGTTTTTCTTTTTA
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