DY271180

Overview
NameDY271180
Unique NameDY271180
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1028
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271180 vs. ExPASy Swiss-Prot
Match: RL37A_GOSHI (60S ribosomal protein L37a OS=Gossypium hirsutum GN=RPL37A PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 4.943e-25
Identity = 55/57 (96.49%), Postives = 55/57 (96.49%), Query Frame = 2
Query:    2 KYFC*FCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 172
            KYFC FCGKYAVKRKAVGIWGCK CGKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct:   36 KYFCEFCGKYAVKRKAVGIWGCKACGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 92          
BLAST of DY271180 vs. ExPASy Swiss-Prot
Match: RL37A_ORYSJ (60S ribosomal protein L37a OS=Oryza sativa subsp. japonica GN=Os01g0679700 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 6.456e-25
Identity = 53/57 (92.98%), Postives = 56/57 (98.25%), Query Frame = 2
Query:    2 KYFC*FCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 172
            KYFC FCGK+AVKRKAVGIWGCKDCGKVKAGGAYT+NTASAVTVRSTIRRLREQTE+
Sbjct:   36 KYFCEFCGKFAVKRKAVGIWGCKDCGKVKAGGAYTMNTASAVTVRSTIRRLREQTEA 92          
BLAST of DY271180 vs. ExPASy Swiss-Prot
Match: R37A1_ARATH (Putative 60S ribosomal protein L37a-1 OS=Arabidopsis thaliana GN=RPL37AB PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 6.456e-25
Identity = 53/57 (92.98%), Postives = 55/57 (96.49%), Query Frame = 2
Query:    2 KYFC*FCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 172
            KYFC FCGKY+VKRK VGIWGCKDCGKVKAGGAYT+NTASAVTVRSTIRRLREQTES
Sbjct:   36 KYFCEFCGKYSVKRKVVGIWGCKDCGKVKAGGAYTMNTASAVTVRSTIRRLREQTES 92          
BLAST of DY271180 vs. ExPASy Swiss-Prot
Match: R37A2_ARATH (60S ribosomal protein L37a-2 OS=Arabidopsis thaliana GN=RPL37AC PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 4.184e-24
Identity = 52/56 (92.86%), Postives = 53/56 (94.64%), Query Frame = 2
Query:    2 KYFC*FCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 169
            KYFC FCGKY VKRKAVGIWGCKDCGKVKAGGAYT+NTASAVTVRSTIRRLREQ E
Sbjct:   36 KYFCEFCGKYGVKRKAVGIWGCKDCGKVKAGGAYTMNTASAVTVRSTIRRLREQIE 91          
BLAST of DY271180 vs. ExPASy Swiss-Prot
Match: RL37A_PSEMZ (60S ribosomal protein L37a OS=Pseudotsuga menziesii GN=RPL37A PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 5.465e-24
Identity = 52/56 (92.86%), Postives = 54/56 (96.43%), Query Frame = 2
Query:    2 KYFC*FCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 169
            K+FC FCGK+AVKRKAVGIWGCKDCGKVKAGGAYTLNT SAVTVRSTIRRLREQTE
Sbjct:   36 KFFCEFCGKFAVKRKAVGIWGCKDCGKVKAGGAYTLNTPSAVTVRSTIRRLREQTE 91          
BLAST of DY271180 vs. ExPASy Swiss-Prot
Match: RL37A_BRARA (60S ribosomal protein L37a OS=Brassica rapa GN=RPL37A PE=3 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 1.031e-22
Identity = 52/57 (91.23%), Postives = 53/57 (92.98%), Query Frame = 2
Query:    2 KYFC*FCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRS-TIRRLREQTE 169
            KYFC FCGKY VKRKAVGIWGCKDCGKVKAGGAYT+NTASAVTVRS TIRRLREQ E
Sbjct:   36 KYFCEFCGKYGVKRKAVGIWGCKDCGKVKAGGAYTMNTASAVTVRSHTIRRLREQIE 92          
BLAST of DY271180 vs. ExPASy Swiss-Prot
Match: RL37A_OSTLU (60S ribosomal protein L37a OS=Ostreococcus lucimarinus (strain CCE9901) GN=RPL37a PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 4.053e-19
Identity = 43/56 (76.79%), Postives = 47/56 (83.93%), Query Frame = 2
Query:    2 KYFC*FCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 169
            K+FC FCGKY +KRKAVGIW CK C K KAGGAY+LNT  +VTVRSTIRRLRE TE
Sbjct:   36 KFFCDFCGKYGMKRKAVGIWSCKGCNKTKAGGAYSLNTGGSVTVRSTIRRLREATE 91          
BLAST of DY271180 vs. ExPASy Swiss-Prot
Match: RL37A_OSTTA (60S ribosomal protein L37a OS=Ostreococcus tauri GN=RPL37a PE=3 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 2.627e-18
Identity = 42/56 (75.00%), Postives = 47/56 (83.93%), Query Frame = 2
Query:    2 KYFC*FCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 169
            K+FC FCGKY +KR+AVGIW CK C K KAGGAY+LNT  +VTVRSTIRRLRE TE
Sbjct:   36 KFFCDFCGKYGMKRQAVGIWCCKGCNKTKAGGAYSLNTGGSVTVRSTIRRLREATE 91          
BLAST of DY271180 vs. ExPASy Swiss-Prot
Match: RL37A_CRYST (60S ribosomal protein L37a OS=Cryptochiton stelleri GN=RPL37A PE=3 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 2.081e-15
Identity = 39/57 (68.42%), Postives = 45/57 (78.95%), Query Frame = 2
Query:    2 KYFC*FCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 172
            KY C FCGK A+KR+AVGIWGCK C KV AGGA+  +T +AVTVRS +RRLRE  ES
Sbjct:   36 KYTCQFCGKDAMKRQAVGIWGCKSCRKVVAGGAWVYSTMAAVTVRSAVRRLREMKES 92          
BLAST of DY271180 vs. ExPASy Swiss-Prot
Match: RL43_ASHGO (60S ribosomal protein L43 OS=Ashbya gossypii GN=RPL43 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.033e-14
Identity = 38/57 (66.67%), Postives = 42/57 (73.68%), Query Frame = 2
Query:    2 KYFC*FCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 172
            +Y C FCGK AVKR A GIW C  C K  AGGAYT +TA+A TVRSTIRRLRE  E+
Sbjct:   36 RYDCSFCGKKAVKRGAAGIWNCSSCKKTVAGGAYTFSTAAAATVRSTIRRLREMAEA 92          
The following BLAST results are available for this feature:
BLAST of DY271180 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
RL37A_GOSHI4.943e-2596.4960S ribosomal protein L37a OS=Gossypium hirsutum G... [more]
RL37A_ORYSJ6.456e-2592.9860S ribosomal protein L37a OS=Oryza sativa subsp. ... [more]
R37A1_ARATH6.456e-2592.98Putative 60S ribosomal protein L37a-1 OS=Arabidops... [more]
R37A2_ARATH4.184e-2492.8660S ribosomal protein L37a-2 OS=Arabidopsis thalia... [more]
RL37A_PSEMZ5.465e-2492.8660S ribosomal protein L37a OS=Pseudotsuga menziesi... [more]
RL37A_BRARA1.031e-2291.2360S ribosomal protein L37a OS=Brassica rapa GN=RPL... [more]
RL37A_OSTLU4.053e-1976.7960S ribosomal protein L37a OS=Ostreococcus lucimar... [more]
RL37A_OSTTA2.627e-1875.0060S ribosomal protein L37a OS=Ostreococcus tauri G... [more]
RL37A_CRYST2.081e-1568.4260S ribosomal protein L37a OS=Cryptochiton steller... [more]
RL43_ASHGO1.033e-1466.6760S ribosomal protein L43 OS=Ashbya gossypii GN=RP... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YB16FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271180 ID=DY271180; Name=DY271180; organism=Citrus clementina; type=EST; length=1028bp
CAAGTACTTCTGTTAATTCTGTGGGAAGTATGCTGTGAAGAGGAAGGCTG
TGGGAATCTGGGGTTGCAAAGACTGTGGCAAGGTGAAAGCTGGAGGTGCT
TACACTTTGAATACTGCTAGTGCTGTGACCGTGAGGAGTACAATTCGGAG
GCTGAGGGAACAGACCGAGAGTTAATTTTGTTGCCAATCTATCCTTTTTT
TCATTTAGTTGTGATAGGAGTAATTACTGGGGCAGGATTGTCTAAAGGAA
TTTCCATGCTTGGAAATCTGGTCTAAAAAGTTTTTGAATTAGAATCTCCT
TACTAAAAAAAAAAAAAATAAAAACACCTAAATTTATAGTACCAAGTCAG
TAATCACAAAAAGAATTGCCTCCCAATTATGGCTGCAAACAAGACGCTCA
TAGTCAACATACAAATCGTAATCGCCACACACCGAACCCACTCTACCGTC
GACGCACATCTACTGGTCACTGCATGGCCCACCCCCAACACATGCTCACC
GGTACAAAACTCCTTAACTCCGTAATCCTACACAACCAACCACGATCCCC
CACAATGAAAGACATCCGACGCCTAACAAGTAAAGATGATACAACGTTAC
TCCTAATCACACATAATTACTGACCGTATCGATCGACACACATAAGCTCC
CCACATCCCCGTCGCACCTTCCCCCTCAATTACACTCCCCCCAGCACCCG
ACACCACACACCAACCATCCACATTGCAAAGCAATACATCCCACCTACAC
AGCCAAAGCACCTTTGTCAACATCTACCCCGACCACACACGCAACACAAA
TACCCCACCACACAACCGCCATACCGCTAGTTTACTTTTCCACTACCTGA
ACATTACCTACACTCAAACACCACTCATTTATCCACGTATTTGACAAAGC
ACTATACAGATAACTCCAAATTTAAACTTGACCAACACACTACTTTTTCC
CCTCCTACCCAACTCACATTATATTTAACCTTATCCACACAGATTCCGCC
AGACACGTCATCGACACAACCTAAAATC
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