DY271190

Overview
NameDY271190
Unique NameDY271190
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length956
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271190 vs. ExPASy Swiss-Prot
Match: Y4117_ARATH (Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.296e-24
Identity = 54/106 (50.94%), Postives = 71/106 (66.98%), Query Frame = 3
Query:  408 NFRGEDTRDNFTSHLYSALCQKSIATFIDNDLKRGDEISQSLLDTIEASSISIVIFSKRHASSGWCLDELLKILECQHNYGQIVIPVFYRVDPSHVRKRIGSFGDS 725
            +FRGED R+NF SHL      K I TF D+ +KR   I   L   I  S IS+V+FS+ +ASS WCLDEL++I++C+   G  V+PVFY+VDPS +RK+ G FG S
Sbjct:   16 SFRGEDVRNNFLSHLLKEFESKGIVTFRDDHIKRSHTIGHELRAAIRESKISVVLFSENYASSSWCLDELIEIMKCKEEQGLKVMPVFYKVDPSDIRKQTGKFGMS 121          
BLAST of DY271190 vs. ExPASy Swiss-Prot
Match: TMVRN_NICGU (TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.871e-23
Identity = 56/110 (50.91%), Postives = 73/110 (66.36%), Query Frame = 3
Query:  408 NFRGEDTRDNFTSHLYSALCQKSIATFIDND-LKRGDEISQSLLDTIEASSISIVIFSKRHASSGWCLDELLKILECQHNYGQIVIPVFYRVDPSHVRKRIGSFGDSISK 734
            +FRGEDTR  FTSHLY  L  K I TF D+  L+ G  I   L   IE S  +IV+FS+ +A+S WCL+EL+KI+EC+  + Q VIP+FY VDPSHVR +  SF  +  +
Sbjct:   17 SFRGEDTRKTFTSHLYEVLNDKGIKTFQDDKRLEYGATIPGELCKAIEESQFAIVVFSENYATSRWCLNELVKIMECKTRFKQTVIPIFYDVDPSHVRNQKESFAKAFEE 126          
BLAST of DY271190 vs. ExPASy Swiss-Prot
Match: P2A05_ARATH (Protein PHLOEM PROTEIN 2-LIKE A5 OS=Arabidopsis thaliana GN=PP2A5 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.888e-18
Identity = 51/123 (41.46%), Postives = 71/123 (57.72%), Query Frame = 3
Query:  408 NFRGEDTRDNFTSHLYSALCQKSIATFIDNDLKRGDEISQSLLDTIEASSISIVIFSKRHASSGWCLDELLKILECQHNYGQIVIPVFYRVDPSHVRKRIGSFGDSISKALKKISRQDAKMEE 776
            NFRG+D R  F S L  AL ++ I  FID   +RG  +  SL DTI  S I++VIFS+ +  S WC+DEL+KI E       I+IP+FYR+D   V+   G FGD+    + K   +  K+ +
Sbjct:   27 NFRGKDLRKGFMSFLKPALKKEKINVFIDEQEERGKYLI-SLFDTIGESKIALVIFSEGYCESHWCMDELVKIKEYMDQNRLIIIPIFYRLDLDVVKDLTGKFGDNFWDLVDKYQPEPKKLHK 148          
BLAST of DY271190 vs. ExPASy Swiss-Prot
Match: P2A08_ARATH (Protein PHLOEM PROTEIN 2-LIKE A8 OS=Arabidopsis thaliana GN=PP2A8 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 2.004e-17
Identity = 50/132 (37.88%), Postives = 80/132 (60.61%), Query Frame = 3
Query:  408 NFRGEDTRDNFTSHLYSALCQKSIATFIDNDLKRGDEISQSLLDTIEASSISIVIFSKRHASSGWCLDELLKILECQHNYGQIVIPVFYRVDPSHVRKRIGSFGDSISKALKKISRQDAKMEECFDRSTKSL 803
            NFRG+D R+ F S L  A+ + +I  FID D   G ++  +L   I+ S +++VIFSK + SS WCLDEL +I +C +  G   IP+FY++ PS V +  G FGD+  + LK+  + D +  + +  + +S+
Sbjct:   19 NFRGKDLRNGFLSFLEPAMREANINVFIDKDEVVGTDLV-NLFVRIQESRVAVVIFSKDYTSSEWCLDELAEIKDCINQGGLNAIPIFYKLAPSSVLELKGGFGDTF-RVLKEKYKNDPERTQKWQEALESI 148          
BLAST of DY271190 vs. ExPASy Swiss-Prot
Match: P2A06_ARATH (Protein PHLOEM PROTEIN 2-LIKE A6 OS=Arabidopsis thaliana GN=PP2A6 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 6.034e-14
Identity = 51/131 (38.93%), Postives = 77/131 (58.78%), Query Frame = 3
Query:  411 FRGEDTRDNFTSHLYSALCQKSIATFIDNDLKRGDEISQSLLDTIEASSISIVIFSKRHASSGWCLDELLKILECQHNYGQIVIPVFYRVDPSHVRKRIGSFGDSISKALKKISRQDAKMEECFDRSTKSL 803
            FRG D R +F S L  AL + +I  FID +   G E++ +LL  IE S +++VIFS     S  CL+EL KI E +     IVIP+FY+V PS V+   G FGD+  +AL++ +R    + + +  + +S+
Sbjct:   21 FRGADVRKHFISFLVPALREANINVFIDENEFLGSEMA-NLLTRIEESELALVIFSVDFTRSHRCLNELAKIKERKDQGRLIVIPIFYKVKPSAVKFLEGKFGDNF-RALERNNRHMLPITQKWKEALESI 149          
The following BLAST results are available for this feature:
BLAST of DY271190 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
Y4117_ARATH1.296e-2450.94Putative disease resistance protein At4g11170 OS=A... [more]
TMVRN_NICGU1.871e-2350.91TMV resistance protein N OS=Nicotiana glutinosa GN... [more]
P2A05_ARATH6.888e-1841.46Protein PHLOEM PROTEIN 2-LIKE A5 OS=Arabidopsis th... [more]
P2A08_ARATH2.004e-1737.88Protein PHLOEM PROTEIN 2-LIKE A8 OS=Arabidopsis th... [more]
P2A06_ARATH6.034e-1438.93Protein PHLOEM PROTEIN 2-LIKE A6 OS=Arabidopsis th... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP9YC15FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271190 ID=DY271190; Name=DY271190; organism=Citrus clementina; type=EST; length=956bp
TTATCCATTTTTATTTCGCCAAACGTTGAGGACGTAAATGTTAATAATGT
CCCTCGGTTGAATGAAACTACGGCGACCCAATTGTCGAAGTTAAGAGTTG
AACGTCAACACAAAGACCCATTGAAGGCAGCCTGGCGTGAAATTATTGGA
TGGGCTATACAATTCACGTCATTGTTAGAGCGAACGCATATTATACGACA
CGCTCCAACAGAAAGCGAGAATTTTGACGTGGATCAGATTTTTTTTTTCT
TTATTCGGGAGCAAAATTGTTGACTGAAAAAAATCCCTCATAATATCATA
TATATTGTTGACTGAGAAGGGAAAAACGCCAACAAATCTGCTTGAAATTA
TTGCCCAAGGATAATTGAAAAAGATAAGATGCAACTATCATCGTGAAAAT
TCCCAGAAATTTCAGAGGAGAGGACACCCGTGACAACTTTACCAGCCATC
TCTATTCAGCCTTGTGCCAAAAAAGTATTGCAACTTTCATTGACAATGAT
CTTAAGAGAGGAGATGAAATTTCACAGTCTCTTCTTGATACAATTGAAGC
ATCAAGCATCTCAATTGTCATTTTCTCAAAAAGGCATGCTTCTTCAGGAT
GGTGTCTCGATGAACTTTTAAAGATCCTCGAATGCCAGCACAATTATGGA
CAGATTGTGATACCAGTTTTCTATCGGGTTGATCCATCACATGTGAGGAA
GCGAATTGGGAGTTTTGGGGACTCAATTTCCAAAGCTTTGAAAAAGATTT
CCAGACAAGATGCAAAAATGGAGGAGTGCTTTGACCGAAGTACCAAATCC
CTCTGGCTTAATTCCCACGTCATTAGGTGTTGGGGTTGACCATGGAAACC
TGGCAAATTAGGGATCTGGGGCATTGGCGGCCGTAGAAAAAACGCCATCC
CCAGGGGCTTTTTTTTAAAAAATCCCCAAAACTTTTTGAAAGTTTCTTAT
TCTGCC
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