DY271192
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY271192 vs. ExPASy Swiss-Prot
Match: RL6_MESCR (60S ribosomal protein L6 OS=Mesembryanthemum crystallinum GN=RPL6 PE=2 SV=1) HSP 1 Score: 311.227 bits (796), Expect = 4.551e-84 Identity = 157/223 (70.40%), Postives = 173/223 (77.58%), Query Frame = 1 Query: 19 SRNPDLIRGVGKFSRSKMYHKRGLWAIKAKNGGVFPKHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKHKPTKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGKFDDQYFXXXXXXXXXXXXXXXXXXXXXXXXVLPDDKKDDQKTVDAQLIKSIEAVPDLKTYLSARFSLKSGMKPHELVF 687 SRNP+L+RG+GK+SRSKMYHKRGLWAIKAKNGGVFPKH FYPADDVKKPL+NKRK KPTKLRASITPGTV I+LAGRF GKRVVFLKQL+SGLLLVTGPFKVNGVPLRRVNQ+YVIATSTKVDISGV++ KFDD+YF VLP +KKDDQK VD L+K+IE VP+LK YL ARFSLK+GMKPHELVF Sbjct: 12 SRNPELVRGIGKYSRSKMYHKRGLWAIKAKNGGVFPKHAPKSADSKAVEKPPKFYPADDVKKPLINKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGPFKVNGVPLRRVNQAYVIATSTKVDISGVNVEKFDDKYFGKKAEKKNKKGEGEFFEAEKKEVNVLPQEKKDDQKAVDVALLKAIEGVPELKAYLGARFSLKAGMKPHELVF 234
BLAST of DY271192 vs. ExPASy Swiss-Prot
Match: RL61_ARATH (60S ribosomal protein L6-1 OS=Arabidopsis thaliana GN=RPL6A PE=2 SV=1) HSP 1 Score: 306.22 bits (783), Expect = 1.464e-82 Identity = 154/223 (69.06%), Postives = 172/223 (77.13%), Query Frame = 1 Query: 19 SRNPDLIRGVGKFSRSKMYHKRGLWAIKAKNGGVFPKHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKHKPTKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGKFDDQYFXXXXXXXXXXXXXXXXXXXXXXXXVLPDDKKDDQKTVDAQLIKSIEAVPDLKTYLSARFSLKSGMKPHELVF 687 +RNPDLIRGVGK+SRS+MYHKRGLWAIKAKNGGVFP+HD FYPA+DVKKPLVN+RK KPTKL+ASITPGTV I+LAGRF GKRVVFLKQL+SGLLLVTGPFK+NGVPLRRVNQ+YVI TSTK+DISGV+ KFDD+YF +P +KK+DQKTVDA LIKSIEAVP+LK YL ARFSL GMKPHELVF Sbjct: 11 NRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAQPKVDAPVEKPAKFYPAEDVKKPLVNRRKPKPTKLKASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGPFKINGVPLRRVNQAYVIGTSTKIDISGVNTEKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEIPQEKKEDQKTVDAALIKSIEAVPELKVYLGARFSLSQGMKPHELVF 233
BLAST of DY271192 vs. ExPASy Swiss-Prot
Match: RL63_ARATH (60S ribosomal protein L6-3 OS=Arabidopsis thaliana GN=RPL6C PE=1 SV=1) HSP 1 Score: 304.679 bits (779), Expect = 4.260e-82 Identity = 156/223 (69.96%), Postives = 169/223 (75.78%), Query Frame = 1 Query: 19 SRNPDLIRGVGKFSRSKMYHKRGLWAIKAKNGGVFPKHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKHKPTKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGKFDDQYFXXXXXXXXXXXXXXXXXXXXXXXXVLPDDKKDDQKTVDAQLIKSIEAVPDLKTYLSARFSLKSGMKPHELVF 687 +RNPDLIRGVGK+SRS+MYHKRGLWAIKAKNGGVFP+HD FYPA+DVKKPL N+R KPTKLRASITPGTV I+LAGRF GKRVVFLKQL SGLLLVTGPFK+NGVPLRRVNQ+YVI TSTKVDISGV L KFDD+YF +P KKDDQK VDA LIK+IEAVP+LKTYL ARFSLK GMKPHELVF Sbjct: 11 NRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPVEKPPKFYPAEDVKKPLPNRRTAKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEIPQVKKDDQKAVDAALIKAIEAVPELKTYLGARFSLKQGMKPHELVF 233
BLAST of DY271192 vs. ExPASy Swiss-Prot
Match: RL62_ARATH (60S ribosomal protein L6-2 OS=Arabidopsis thaliana GN=RPL6B PE=2 SV=1) HSP 1 Score: 303.908 bits (777), Expect = 7.266e-82 Identity = 156/227 (68.72%), Postives = 169/227 (74.45%), Query Frame = 1 Query: 7 TG*TSRNPDLIRGVGKFSRSKMYHKRGLWAIKAKNGGVFPKHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKHKPTKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGKFDDQYFXXXXXXXXXXXXXXXXXXXXXXXXVLPDDKKDDQKTVDAQLIKSIEAVPDLKTYLSARFSLKSGMKPHELVF 687 T +RNPDLIRGVGK+SRS+MYHKRGLWAIKAKNGGVFP+HD FYPA+DVKKPL N+R KP KLRASITPGTV I+LAGRF GKRVVFLKQL SGLLLVTGPFK+NGVPLRRVNQ+YVI TSTKVDISGV L KFDD+YF +P KKDDQK VDA LIK+IEAVP+LKTYL ARFSLK GMKPHELVF Sbjct: 7 TAKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPVEKPPKFYPAEDVKKPLPNRRTAKPAKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEIPQGKKDDQKAVDAALIKAIEAVPELKTYLGARFSLKQGMKPHELVF 233
BLAST of DY271192 vs. ExPASy Swiss-Prot
Match: RL6_PIG (60S ribosomal protein L6 OS=Sus scrofa GN=RPL6 PE=2 SV=3) HSP 1 Score: 162.54 bits (410), Expect = 2.615e-39 Identity = 103/255 (40.39%), Postives = 139/255 (54.51%), Query Frame = 1 Query: 19 SRNPDLIRGVGKFSRSKMYHKRGLWAIKA--------------------------KNGGVFPKHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKHKP-----TKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGK-FDDQYFXXXXXXXXXXXXXXXXXXXXXXXXVLPDDKKDDQKTVDAQLIKSIEAVPDLKTYLSARFSLKSGMKPHELVF 687 SRNP L+RG+G++SRS MY ++ L+ K KNGG +YP +DV + L++ K KP KLRASITPGT+ I+L GR GKRV+FLKQL+SGLLLVTGP +N VPLRR +Q +VIATSTK+DISGV + + D YF + + +K DQK VD+Q+++ I+AVP L+ YL + F+L +G+ PH+LVF Sbjct: 41 SRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKSKVEKKKKVRVLATVTKPVGGDKNGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSKHVRKLRASITPGTILIILTGRHRGKRVIFLKQLSSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDAYFKKKKLRKPRHQEGEIFDTEKEKYEI-SEQRKVDQKAVDSQILRRIKAVPQLQGYLRSVFALTNGIYPHKLVF 284
BLAST of DY271192 vs. ExPASy Swiss-Prot
Match: RL6_MOUSE (60S ribosomal protein L6 OS=Mus musculus GN=Rpl6 PE=1 SV=3) HSP 1 Score: 162.155 bits (409), Expect = 3.415e-39 Identity = 106/256 (41.41%), Postives = 136/256 (53.12%), Query Frame = 1 Query: 19 SRNPDLIRGVGKFSRSKMYHKRGLWAIKA---------------------------KNGGVFPKHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKHKP-----TKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGK-FDDQYFXXXXXXXXXXXXXXXXXXXXXXXXVLPDDKKDDQKTVDAQLIKSIEAVPDLKTYLSARFSLKSGMKPHELVF 687 SRNP L+RG+G++SRS MY ++ L+ K KNGG +YP +DV + L++ K KP +LR+SITPGTV I+L GR GKRVVFLKQL SGLLLVTGP +N VPLRR +Q +VIATSTKVDIS V + K D YF + + +K DQK VD Q++ I+AVP L+ YL ++FSL +GM PH+LVF Sbjct: 52 SRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKTKVEKKKKKEKVLATVTKTVGGDKNGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSQHVRRLRSSITPGTVLIILTGRHRGKRVVFLKQLDSGLLLVTGPLVINRVPLRRTHQKFVIATSTKVDISDVKIPKHLTDAYFKKKQLRKPRHQEGEIFDTEKEKYEI-TEQRKADQKAVDLQILPKIKAVPQLQGYLRSQFSLTNGMYPHKLVF 296
BLAST of DY271192 vs. ExPASy Swiss-Prot
Match: RL6_RAT (60S ribosomal protein L6 OS=Rattus norvegicus GN=Rpl6 PE=1 SV=5) HSP 1 Score: 161.77 bits (408), Expect = 4.460e-39 Identity = 106/256 (41.41%), Postives = 137/256 (53.52%), Query Frame = 1 Query: 19 SRNPDLIRGVGKFSRSKMYHKRGLWAIKA---------------------------KNGGVFPKHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKHKP-----TKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGK-FDDQYFXXXXXXXXXXXXXXXXXXXXXXXXVLPDDKKDDQKTVDAQLIKSIEAVPDLKTYLSARFSLKSGMKPHELVF 687 SRNP L+RG+G++SRS MY ++ L+ K KNGG +YP +DV + L++ K KP +LR+SITPGTV I+L GR GKRVVFLKQL SGLLLVTGP +N VPLRR +Q +VIATSTKVDIS V + K D YF + + +K DQK VD+Q++ I+AVP L+ YL ++FSL +GM PH+LVF Sbjct: 54 SRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKTKVEKKKKKEKVLATVTKTVGGDKNGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSQHVRRLRSSITPGTVLIILTGRHRGKRVVFLKQLGSGLLLVTGPLALNRVPLRRTHQKFVIATSTKVDISKVKIPKHLTDAYFKKKPLRKPRHQEGEIFDTEKEKYEI-TEQRKADQKAVDSQILPKIKAVPQLQGYLRSQFSLTNGMYPHKLVF 298
BLAST of DY271192 vs. ExPASy Swiss-Prot
Match: RL6_CHILA (60S ribosomal protein L6 OS=Chinchilla lanigera GN=RPL6 PE=2 SV=3) HSP 1 Score: 161.77 bits (408), Expect = 4.460e-39 Identity = 105/255 (41.18%), Postives = 136/255 (53.33%), Query Frame = 1 Query: 19 SRNPDLIRGVGKFSRSKMYHKRGLWAIKA--------------------------KNGGVFPKHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKHKP-----TKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGK-FDDQYFXXXXXXXXXXXXXXXXXXXXXXXXVLPDDKKDDQKTVDAQLIKSIEAVPDLKTYLSARFSLKSGMKPHELVF 687 SRNP L+RG+G++SRS MY ++ L+ K KNGG +YP +DV + L++ K KP KLRASITPGTV I+L GR GKRVVFLKQL SGLLLVTGP +N VPLRR +Q +VIATSTK+DIS V + K D YF + + +K DQK VD+Q++ I+AVP L+ YL + F+L +G+ PH+LVF Sbjct: 45 SRNPVLVRGIGRYSRSAMYSRKALYKRKYTAAKSKVEKKKKEKVLATVTKPVGGDKNGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSQHVRKLRASITPGTVLIILTGRHRGKRVVFLKQLASGLLLVTGPLNLNRVPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYFKKKKLRKPRHQEGEIFDTEKERYQI-SEQRKVDQKAVDSQILPKIKAVPQLRGYLRSVFALTNGIYPHKLVF 288
BLAST of DY271192 vs. ExPASy Swiss-Prot
Match: RL6_BOVIN (60S ribosomal protein L6 OS=Bos taurus GN=RPL6 PE=2 SV=3) HSP 1 Score: 160.614 bits (405), Expect = 9.935e-39 Identity = 103/255 (40.39%), Postives = 138/255 (54.12%), Query Frame = 1 Query: 19 SRNPDLIRGVGKFSRSKMYHKRGLWAIKA--------------------------KNGGVFPKHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKHKP-----TKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGK-FDDQYFXXXXXXXXXXXXXXXXXXXXXXXXVLPDDKKDDQKTVDAQLIKSIEAVPDLKTYLSARFSLKSGMKPHELVF 687 SRNP L+RG+G++SRS MY ++ L+ K KNGG +YP +DV + L++ K KP KLRASITPGT+ I+L GR GKRVVFLKQL SGLLLVTGP +N VPLRR +Q +VIATSTK+DISGV + + D YF + + +K DQK VD+Q+++ I+AVP L+ YL + F+L +G+ PH++VF Sbjct: 44 SRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKSKVEKKKKVRVLATVTKPVGGDKNGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSKHVRKLRASITPGTILIILTGRHRGKRVVFLKQLGSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDTYFKKKKLRKPRHQEGEIFDTEREKYEI-TEQRKVDQKAVDSQILRRIKAVPQLQGYLRSVFALTNGIYPHKVVF 287
BLAST of DY271192 vs. ExPASy Swiss-Prot
Match: RL6_HUMAN (60S ribosomal protein L6 OS=Homo sapiens GN=RPL6 PE=1 SV=3) HSP 1 Score: 159.073 bits (401), Expect = 2.891e-38 Identity = 102/255 (40.00%), Postives = 136/255 (53.33%), Query Frame = 1 Query: 19 SRNPDLIRGVGKFSRSKMYHKRGLWAIKA--------------------------KNGGVFPKHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKHKP-----TKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGK-FDDQYFXXXXXXXXXXXXXXXXXXXXXXXXVLPDDKKDDQKTVDAQLIKSIEAVPDLKTYLSARFSLKSGMKPHELVF 687 SRNP L+RG+G++SRS MY ++ ++ K KNGG +YP +DV + L++ K KP KLRASITPGT+ I+L GR GKRVVFLKQL SGLLLVTGP +N VPLRR +Q +VIATSTK+DIS V + K D YF + + +K DQK VD+Q++ I+A+P L+ YL + F+L +G+ PH+LVF Sbjct: 45 SRNPVLVRGIGRYSRSAMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSQHVRKLRASITPGTILIILTGRHRGKRVVFLKQLASGLLLVTGPLVLNRVPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYFKKKKLRKPRHQEGEIFDTEKEKYEI-TEQRKIDQKAVDSQILPKIKAIPQLQGYLRSVFALTNGIYPHKLVF 288 The following BLAST results are available for this feature:
BLAST of DY271192 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 15
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Sequences
The
following sequences are available for this feature:
EST sequence >DY271192 ID=DY271192; Name=DY271192; organism=Citrus clementina; type=EST; length=837bpback to top |