DY271192

Overview
NameDY271192
Unique NameDY271192
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length837
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271192 vs. ExPASy Swiss-Prot
Match: RL6_MESCR (60S ribosomal protein L6 OS=Mesembryanthemum crystallinum GN=RPL6 PE=2 SV=1)

HSP 1 Score: 311.227 bits (796), Expect = 4.551e-84
Identity = 157/223 (70.40%), Postives = 173/223 (77.58%), Query Frame = 1
Query:   19 SRNPDLIRGVGKFSRSKMYHKRGLWAIKAKNGGVFPKHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKHKPTKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGKFDDQYFXXXXXXXXXXXXXXXXXXXXXXXXVLPDDKKDDQKTVDAQLIKSIEAVPDLKTYLSARFSLKSGMKPHELVF 687
            SRNP+L+RG+GK+SRSKMYHKRGLWAIKAKNGGVFPKH               FYPADDVKKPL+NKRK KPTKLRASITPGTV I+LAGRF GKRVVFLKQL+SGLLLVTGPFKVNGVPLRRVNQ+YVIATSTKVDISGV++ KFDD+YF                        VLP +KKDDQK VD  L+K+IE VP+LK YL ARFSLK+GMKPHELVF
Sbjct:   12 SRNPELVRGIGKYSRSKMYHKRGLWAIKAKNGGVFPKHAPKSADSKAVEKPPKFYPADDVKKPLINKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGPFKVNGVPLRRVNQAYVIATSTKVDISGVNVEKFDDKYFGKKAEKKNKKGEGEFFEAEKKEVNVLPQEKKDDQKAVDVALLKAIEGVPELKAYLGARFSLKAGMKPHELVF 234          
BLAST of DY271192 vs. ExPASy Swiss-Prot
Match: RL61_ARATH (60S ribosomal protein L6-1 OS=Arabidopsis thaliana GN=RPL6A PE=2 SV=1)

HSP 1 Score: 306.22 bits (783), Expect = 1.464e-82
Identity = 154/223 (69.06%), Postives = 172/223 (77.13%), Query Frame = 1
Query:   19 SRNPDLIRGVGKFSRSKMYHKRGLWAIKAKNGGVFPKHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKHKPTKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGKFDDQYFXXXXXXXXXXXXXXXXXXXXXXXXVLPDDKKDDQKTVDAQLIKSIEAVPDLKTYLSARFSLKSGMKPHELVF 687
            +RNPDLIRGVGK+SRS+MYHKRGLWAIKAKNGGVFP+HD              FYPA+DVKKPLVN+RK KPTKL+ASITPGTV I+LAGRF GKRVVFLKQL+SGLLLVTGPFK+NGVPLRRVNQ+YVI TSTK+DISGV+  KFDD+YF                         +P +KK+DQKTVDA LIKSIEAVP+LK YL ARFSL  GMKPHELVF
Sbjct:   11 NRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAQPKVDAPVEKPAKFYPAEDVKKPLVNRRKPKPTKLKASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGPFKINGVPLRRVNQAYVIGTSTKIDISGVNTEKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEIPQEKKEDQKTVDAALIKSIEAVPELKVYLGARFSLSQGMKPHELVF 233          
BLAST of DY271192 vs. ExPASy Swiss-Prot
Match: RL63_ARATH (60S ribosomal protein L6-3 OS=Arabidopsis thaliana GN=RPL6C PE=1 SV=1)

HSP 1 Score: 304.679 bits (779), Expect = 4.260e-82
Identity = 156/223 (69.96%), Postives = 169/223 (75.78%), Query Frame = 1
Query:   19 SRNPDLIRGVGKFSRSKMYHKRGLWAIKAKNGGVFPKHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKHKPTKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGKFDDQYFXXXXXXXXXXXXXXXXXXXXXXXXVLPDDKKDDQKTVDAQLIKSIEAVPDLKTYLSARFSLKSGMKPHELVF 687
            +RNPDLIRGVGK+SRS+MYHKRGLWAIKAKNGGVFP+HD              FYPA+DVKKPL N+R  KPTKLRASITPGTV I+LAGRF GKRVVFLKQL SGLLLVTGPFK+NGVPLRRVNQ+YVI TSTKVDISGV L KFDD+YF                         +P  KKDDQK VDA LIK+IEAVP+LKTYL ARFSLK GMKPHELVF
Sbjct:   11 NRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPVEKPPKFYPAEDVKKPLPNRRTAKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEIPQVKKDDQKAVDAALIKAIEAVPELKTYLGARFSLKQGMKPHELVF 233          
BLAST of DY271192 vs. ExPASy Swiss-Prot
Match: RL62_ARATH (60S ribosomal protein L6-2 OS=Arabidopsis thaliana GN=RPL6B PE=2 SV=1)

HSP 1 Score: 303.908 bits (777), Expect = 7.266e-82
Identity = 156/227 (68.72%), Postives = 169/227 (74.45%), Query Frame = 1
Query:    7 TG*TSRNPDLIRGVGKFSRSKMYHKRGLWAIKAKNGGVFPKHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKHKPTKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGKFDDQYFXXXXXXXXXXXXXXXXXXXXXXXXVLPDDKKDDQKTVDAQLIKSIEAVPDLKTYLSARFSLKSGMKPHELVF 687
            T   +RNPDLIRGVGK+SRS+MYHKRGLWAIKAKNGGVFP+HD              FYPA+DVKKPL N+R  KP KLRASITPGTV I+LAGRF GKRVVFLKQL SGLLLVTGPFK+NGVPLRRVNQ+YVI TSTKVDISGV L KFDD+YF                         +P  KKDDQK VDA LIK+IEAVP+LKTYL ARFSLK GMKPHELVF
Sbjct:    7 TAKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPVEKPPKFYPAEDVKKPLPNRRTAKPAKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEIPQGKKDDQKAVDAALIKAIEAVPELKTYLGARFSLKQGMKPHELVF 233          
BLAST of DY271192 vs. ExPASy Swiss-Prot
Match: RL6_PIG (60S ribosomal protein L6 OS=Sus scrofa GN=RPL6 PE=2 SV=3)

HSP 1 Score: 162.54 bits (410), Expect = 2.615e-39
Identity = 103/255 (40.39%), Postives = 139/255 (54.51%), Query Frame = 1
Query:   19 SRNPDLIRGVGKFSRSKMYHKRGLWAIKA--------------------------KNGGVFPKHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKHKP-----TKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGK-FDDQYFXXXXXXXXXXXXXXXXXXXXXXXXVLPDDKKDDQKTVDAQLIKSIEAVPDLKTYLSARFSLKSGMKPHELVF 687
            SRNP L+RG+G++SRS MY ++ L+  K                           KNGG                    +YP +DV + L++  K KP      KLRASITPGT+ I+L GR  GKRV+FLKQL+SGLLLVTGP  +N VPLRR +Q +VIATSTK+DISGV + +   D YF                        +  + +K DQK VD+Q+++ I+AVP L+ YL + F+L +G+ PH+LVF
Sbjct:   41 SRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKSKVEKKKKVRVLATVTKPVGGDKNGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSKHVRKLRASITPGTILIILTGRHRGKRVIFLKQLSSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDAYFKKKKLRKPRHQEGEIFDTEKEKYEI-SEQRKVDQKAVDSQILRRIKAVPQLQGYLRSVFALTNGIYPHKLVF 284          
BLAST of DY271192 vs. ExPASy Swiss-Prot
Match: RL6_MOUSE (60S ribosomal protein L6 OS=Mus musculus GN=Rpl6 PE=1 SV=3)

HSP 1 Score: 162.155 bits (409), Expect = 3.415e-39
Identity = 106/256 (41.41%), Postives = 136/256 (53.12%), Query Frame = 1
Query:   19 SRNPDLIRGVGKFSRSKMYHKRGLWAIKA---------------------------KNGGVFPKHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKHKP-----TKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGK-FDDQYFXXXXXXXXXXXXXXXXXXXXXXXXVLPDDKKDDQKTVDAQLIKSIEAVPDLKTYLSARFSLKSGMKPHELVF 687
            SRNP L+RG+G++SRS MY ++ L+  K                            KNGG                    +YP +DV + L++  K KP      +LR+SITPGTV I+L GR  GKRVVFLKQL SGLLLVTGP  +N VPLRR +Q +VIATSTKVDIS V + K   D YF                        +  + +K DQK VD Q++  I+AVP L+ YL ++FSL +GM PH+LVF
Sbjct:   52 SRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKTKVEKKKKKEKVLATVTKTVGGDKNGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSQHVRRLRSSITPGTVLIILTGRHRGKRVVFLKQLDSGLLLVTGPLVINRVPLRRTHQKFVIATSTKVDISDVKIPKHLTDAYFKKKQLRKPRHQEGEIFDTEKEKYEI-TEQRKADQKAVDLQILPKIKAVPQLQGYLRSQFSLTNGMYPHKLVF 296          
BLAST of DY271192 vs. ExPASy Swiss-Prot
Match: RL6_RAT (60S ribosomal protein L6 OS=Rattus norvegicus GN=Rpl6 PE=1 SV=5)

HSP 1 Score: 161.77 bits (408), Expect = 4.460e-39
Identity = 106/256 (41.41%), Postives = 137/256 (53.52%), Query Frame = 1
Query:   19 SRNPDLIRGVGKFSRSKMYHKRGLWAIKA---------------------------KNGGVFPKHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKHKP-----TKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGK-FDDQYFXXXXXXXXXXXXXXXXXXXXXXXXVLPDDKKDDQKTVDAQLIKSIEAVPDLKTYLSARFSLKSGMKPHELVF 687
            SRNP L+RG+G++SRS MY ++ L+  K                            KNGG                    +YP +DV + L++  K KP      +LR+SITPGTV I+L GR  GKRVVFLKQL SGLLLVTGP  +N VPLRR +Q +VIATSTKVDIS V + K   D YF                        +  + +K DQK VD+Q++  I+AVP L+ YL ++FSL +GM PH+LVF
Sbjct:   54 SRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKTKVEKKKKKEKVLATVTKTVGGDKNGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSQHVRRLRSSITPGTVLIILTGRHRGKRVVFLKQLGSGLLLVTGPLALNRVPLRRTHQKFVIATSTKVDISKVKIPKHLTDAYFKKKPLRKPRHQEGEIFDTEKEKYEI-TEQRKADQKAVDSQILPKIKAVPQLQGYLRSQFSLTNGMYPHKLVF 298          
BLAST of DY271192 vs. ExPASy Swiss-Prot
Match: RL6_CHILA (60S ribosomal protein L6 OS=Chinchilla lanigera GN=RPL6 PE=2 SV=3)

HSP 1 Score: 161.77 bits (408), Expect = 4.460e-39
Identity = 105/255 (41.18%), Postives = 136/255 (53.33%), Query Frame = 1
Query:   19 SRNPDLIRGVGKFSRSKMYHKRGLWAIKA--------------------------KNGGVFPKHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKHKP-----TKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGK-FDDQYFXXXXXXXXXXXXXXXXXXXXXXXXVLPDDKKDDQKTVDAQLIKSIEAVPDLKTYLSARFSLKSGMKPHELVF 687
            SRNP L+RG+G++SRS MY ++ L+  K                           KNGG                    +YP +DV + L++  K KP      KLRASITPGTV I+L GR  GKRVVFLKQL SGLLLVTGP  +N VPLRR +Q +VIATSTK+DIS V + K   D YF                        +  + +K DQK VD+Q++  I+AVP L+ YL + F+L +G+ PH+LVF
Sbjct:   45 SRNPVLVRGIGRYSRSAMYSRKALYKRKYTAAKSKVEKKKKEKVLATVTKPVGGDKNGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSQHVRKLRASITPGTVLIILTGRHRGKRVVFLKQLASGLLLVTGPLNLNRVPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYFKKKKLRKPRHQEGEIFDTEKERYQI-SEQRKVDQKAVDSQILPKIKAVPQLRGYLRSVFALTNGIYPHKLVF 288          
BLAST of DY271192 vs. ExPASy Swiss-Prot
Match: RL6_BOVIN (60S ribosomal protein L6 OS=Bos taurus GN=RPL6 PE=2 SV=3)

HSP 1 Score: 160.614 bits (405), Expect = 9.935e-39
Identity = 103/255 (40.39%), Postives = 138/255 (54.12%), Query Frame = 1
Query:   19 SRNPDLIRGVGKFSRSKMYHKRGLWAIKA--------------------------KNGGVFPKHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKHKP-----TKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGK-FDDQYFXXXXXXXXXXXXXXXXXXXXXXXXVLPDDKKDDQKTVDAQLIKSIEAVPDLKTYLSARFSLKSGMKPHELVF 687
            SRNP L+RG+G++SRS MY ++ L+  K                           KNGG                    +YP +DV + L++  K KP      KLRASITPGT+ I+L GR  GKRVVFLKQL SGLLLVTGP  +N VPLRR +Q +VIATSTK+DISGV + +   D YF                        +  + +K DQK VD+Q+++ I+AVP L+ YL + F+L +G+ PH++VF
Sbjct:   44 SRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKSKVEKKKKVRVLATVTKPVGGDKNGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSKHVRKLRASITPGTILIILTGRHRGKRVVFLKQLGSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDTYFKKKKLRKPRHQEGEIFDTEREKYEI-TEQRKVDQKAVDSQILRRIKAVPQLQGYLRSVFALTNGIYPHKVVF 287          
BLAST of DY271192 vs. ExPASy Swiss-Prot
Match: RL6_HUMAN (60S ribosomal protein L6 OS=Homo sapiens GN=RPL6 PE=1 SV=3)

HSP 1 Score: 159.073 bits (401), Expect = 2.891e-38
Identity = 102/255 (40.00%), Postives = 136/255 (53.33%), Query Frame = 1
Query:   19 SRNPDLIRGVGKFSRSKMYHKRGLWAIKA--------------------------KNGGVFPKHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKHKP-----TKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGK-FDDQYFXXXXXXXXXXXXXXXXXXXXXXXXVLPDDKKDDQKTVDAQLIKSIEAVPDLKTYLSARFSLKSGMKPHELVF 687
            SRNP L+RG+G++SRS MY ++ ++  K                           KNGG                    +YP +DV + L++  K KP      KLRASITPGT+ I+L GR  GKRVVFLKQL SGLLLVTGP  +N VPLRR +Q +VIATSTK+DIS V + K   D YF                        +  + +K DQK VD+Q++  I+A+P L+ YL + F+L +G+ PH+LVF
Sbjct:   45 SRNPVLVRGIGRYSRSAMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSQHVRKLRASITPGTILIILTGRHRGKRVVFLKQLASGLLLVTGPLVLNRVPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYFKKKKLRKPRHQEGEIFDTEKEKYEI-TEQRKIDQKAVDSQILPKIKAIPQLQGYLRSVFALTNGIYPHKLVF 288          
The following BLAST results are available for this feature:
BLAST of DY271192 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
RL6_MESCR4.551e-8470.4060S ribosomal protein L6 OS=Mesembryanthemum cryst... [more]
RL61_ARATH1.464e-8269.0660S ribosomal protein L6-1 OS=Arabidopsis thaliana... [more]
RL63_ARATH4.260e-8269.9660S ribosomal protein L6-3 OS=Arabidopsis thaliana... [more]
RL62_ARATH7.266e-8268.7260S ribosomal protein L6-2 OS=Arabidopsis thaliana... [more]
RL6_PIG2.615e-3940.3960S ribosomal protein L6 OS=Sus scrofa GN=RPL6 PE=... [more]
RL6_MOUSE3.415e-3941.4160S ribosomal protein L6 OS=Mus musculus GN=Rpl6 P... [more]
RL6_RAT4.460e-3941.4160S ribosomal protein L6 OS=Rattus norvegicus GN=R... [more]
RL6_CHILA4.460e-3941.1860S ribosomal protein L6 OS=Chinchilla lanigera GN... [more]
RL6_BOVIN9.935e-3940.3960S ribosomal protein L6 OS=Bos taurus GN=RPL6 PE=... [more]
RL6_HUMAN2.891e-3840.0060S ribosomal protein L6 OS=Homo sapiens GN=RPL6 P... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YC18FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271192 ID=DY271192; Name=DY271192; organism=Citrus clementina; type=EST; length=837bp
GCTGCGACTGGTTGAACGAGCCGTAACCCGGACCTCATACGCGGCGTTGG
CAAGTTCTCCAGATCCAAAATGTACCACAAGCGCGGCCTCTGGGCAATCA
AGGCAAAAAACGGCGGCGTTTTCCCGAAACACGACCCAAAGCCTGCTGCC
GCTGAGACGCCAGCCAAGCCTCCCAAGTTCTACCCAGCTGATGATGTCAA
GAAGCCGCTCGTCAACAAGCGAAAGCACAAACCCACCAAACTCAGAGCGA
GTATTACACCTGGGACAGTGTTTATTCTATTGGCTGGAAGGTTTATGGGG
AAGAGAGTTGTTTTTCTGAAACAACTTACATCTGGGCTGCTTCTTGTTAC
CGGGCCATTCAAGGTCAACGGTGTTCCATTGAGACGGGTAAATCAATCTT
ATGTGATTGCTACCTCTACCAAGGTTGACATTTCTGGAGTCGATCTAGGA
AAGTTTGATGACCAATACTTTGAAAAGGAAGCCGAGAAGAAGAAAAAGAA
GGGGGAAGGAGAATTTTTTGAGGCAGAGAAGGAGGAAAAGAAAGTGCTCC
CAGATGATAAGAAAGATGATCAAAAGACTGTTGATGCGCAATTGATAAAA
TCCATTGAAGCAGTGCCAGACTTGAAGACCTACTTGTCAGCGAGGTTTTC
TCTCAAGTCAGGCATGAAACCTCATGAGCTTGTCTTTTAGAGGAGTTGTC
CAGTTATCTTGAGATATATTATATCTGGAATTCCTTTTGGATGAAATTCT
TGGTAATTGTATCCAGCAGATTCTAATTCTGAACCTCCAGTTTTTCATTA
ACCAGTTTTTGTTTCCATGGAATGAATATTTTATTTG
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