DY271219

Overview
NameDY271219
Unique NameDY271219
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length888
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271219 vs. ExPASy Swiss-Prot
Match: RA212_ARATH (Ethylene-responsive transcription factor RAP2-12 OS=Arabidopsis thaliana GN=RAP2-12 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 4.847e-39
Identity = 108/249 (43.37%), Postives = 134/249 (53.82%), Query Frame = 3
Query:  111 MCGGAIISGYIPPTVPGRPKKLTAEYLWPELKRS--SNKKYSKPI-----VDDDFEADFQGFKXXXXXXXXXXXXXXXXXXXXXXXKPFTFSAGRK------SHGSTAVKHVE----QAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFP-DGTPAAAPKSSVKANSQKSVPKACLSPVQPSLNQNFN-------YLKHSDQDYYNNGSILG 782
            MCGGAIIS +IPP    R +++T+E++WP+LK++   +KK SK        D +FEADFQGFK                       KPF F++  K      + GS   K V      A+KS  RKRKNQYRGIRQRPWGKWAAEIRDP +G R+WLGTF T              IRG KAKVNFP +   A + K SVKAN QK V K   +P  P+L QN N       +++   Q   NN +  G
Sbjct:    1 MCGGAIISDFIPPP---RSRRVTSEFIWPDLKKNLKGSKKSSKNRSNFFDFDAEFEADFQGFKDDSSIDCDDDFDVGDVFADV---KPFVFTSTPKPAVSAAAEGSVFGKKVTGLDGDAEKSANRKRKNQYRGIRQRPWGKWAAEIRDPREGARIWLGTFKTAEEAARAYDAAARRIRGSKAKVNFPEENMKANSQKRSVKANLQKPVAKPNPNP-SPALVQNSNISFENMCFMEEKHQVSNNNNNQFG 242          
BLAST of DY271219 vs. ExPASy Swiss-Prot
Match: RAP22_ARATH (Ethylene-responsive transcription factor RAP2-2 OS=Arabidopsis thaliana GN=RAP2-2 PE=2 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 1.410e-38
Identity = 104/257 (40.47%), Postives = 135/257 (52.53%), Query Frame = 3
Query:  111 MCGGAIISGYIPPTVPGRPKKLTAEYLWPELK-------RSSNKKYSKPIVDDDFEADFQGFKXXXXXXXXXXXXXXXXXXXXXXXKPFTFSAGRK----------------SHGSTAVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPD---GTPAAAPKSSVKANS-QKSV--PKACLSPVQPSLNQNFNYLKHSDQDYYNNGSILGGNPQ 794
            MCGGAIIS +IPP    R  ++T E++WP+LK       + SNK+     +DDDFEADFQGFK                       KPF F+A  K                ++    V+  EQA+KS++RKRKNQYRGIRQRPWGKWAAEIRDP KG R WLGTF+T              IRG KAKVNFP+    +  +  + S K N+ QKSV  P   ++ VQ   + +  Y  +S  + + + S +   PQ
Sbjct:    1 MCGGAIISDFIPPP---RSLRVTNEFIWPDLKNKVKASKKRSNKRSDFFDLDDDFEADFQGFKDDSAFDCEDDDDVFVNV------KPFVFTATTKPVASAFVSTGIYLVGSAYAKKTVESAEQAEKSSKRKRKNQYRGIRQRPWGKWAAEIRDPRKGSREWLGTFDTAEEAARAYDAAARRIRGTKAKVNFPEEKNPSVVSQKRPSAKTNNLQKSVAKPNKSVTLVQQPTHLSQQYCNNSFDNSFGDMSFMEEKPQ 248          
BLAST of DY271219 vs. ExPASy Swiss-Prot
Match: ERF1_ORYSJ (Ethylene-responsive transcription factor 1 OS=Oryza sativa subsp. japonica GN=EREBP1 PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.197e-29
Identity = 88/240 (36.67%), Postives = 118/240 (49.17%), Query Frame = 3
Query:  111 MCGGAIISGYIPPTVPGRP---KKLTAEYLWPELKR----SSNKKYSKPIV---DDDFEADFQGFKXXXXXXXXXXXXXXXXXXXXXXXKPFTFSAGRKSHGSTAVKHVE-QAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDGTPAAAPKSSVKANSQKSVPKACLSPVQ--PSLNQNFNYLKHSDQDYYNNGSILGGNP 791
            MCGGAII       + G P   ++ T   LWPE K+       +++    V   D+DFEADF+ F+                         F  +  R +  +      +  A KS +RKRKNQ+RGIRQRPWGKWAAEIRDP KGVRVWLGTFN+              IRGKKAKVNFP+     AP ++ K  +  +  KA  S V+  P++   FN L +++   Y + +     P
Sbjct:    1 MCGGAIIHH-----LKGHPEGSRRATEGLLWPEKKKPRWGGGGRRHFGGFVEEDDEDFEADFEEFEVDSGDSDLELGEEDDDDVVEIKPAAFKRALSRDNLSTITTAGFDGPAAKSAKRKRKNQFRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNSAEEAARAYDAEARRIRGKKAKVNFPE-----APTTAQKRRAGSTTAKAPKSSVEQKPTVKPAFNNLANANAFVYPSANFTSNKP 230          
BLAST of DY271219 vs. ExPASy Swiss-Prot
Match: RAP23_ARATH (Ethylene-responsive transcription factor RAP2-3 OS=Arabidopsis thaliana GN=RAP2-3 PE=1 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 7.260e-27
Identity = 78/200 (39.00%), Postives = 91/200 (45.50%), Query Frame = 3
Query:  111 MCGGAIISGYIPPTVPGRPKKLTAEYLWPELKRSSNKKYSKPIVDDDFEADFQGFKXXXXXXXXXXXXXXXXXXXXXXXKPFTFSAGRKSHGSTAVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPD-----GTPAAAPKSSVKANSQKSVPKACL 695
            MCGGAIIS Y P     + +KLTAE LW EL  S+          DDF   +   K                               + +    AVK  +  +    RKRKN YRGIR+RPWGKWAAEIRDP KGVRVWLGTFNT              IRG KAK+NFPD           P SS ++  Q    K C+
Sbjct:    1 MCGGAIISDYAPLVTKAKGRKLTAEELWSELDASAA---------DDFWGFYSTSKLHP--------------------------TNQVNVKEEAVKKEQATEPGKRRKRKNVYRGIRKRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAAMAYDVAAKQIRGDKAKLNFPDLHHPPPPNYTPPPSSPRSTDQPPAKKVCV 165          
BLAST of DY271219 vs. ExPASy Swiss-Prot
Match: ERF71_ARATH (Ethylene-responsive transcription factor ERF071 OS=Arabidopsis thaliana GN=ERF071 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 7.277e-19
Identity = 43/69 (62.32%), Postives = 51/69 (73.91%), Query Frame = 3
Query:  417 KKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPD 623
            ++  +R+RKN YRGIRQRPWGKWAAEIRDP+KGVRVWLGTF T              IRG+KAK+NFP+
Sbjct:   39 ERDGKRERKNLYRGIRQRPWGKWAAEIRDPSKGVRVWLGTFKTADEAARAYDVAAIKIRGRKAKLNFPN 107          
BLAST of DY271219 vs. ExPASy Swiss-Prot
Match: EF109_ARATH (Ethylene-responsive transcription factor ERF109 OS=Arabidopsis thaliana GN=ERF109 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.215e-17
Identity = 50/116 (43.10%), Postives = 62/116 (53.45%), Query Frame = 3
Query:  357 TFSAGRKSHGSTAVKHVEQAKKSTERK-RKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFP-------DGTPAAAPKSSVKANSQKSV 680
            T S+ R+   S   K  E   K  +RK +KN YRG+RQRPWGK+AAEIRDP +  RVWLGTF T               RG +AK+NFP         +P AA     KA++  SV
Sbjct:  104 TSSSNRRRESSPVAKKAEGGGKIRKRKNKKNGYRGVRQRPWGKFAAEIRDPKRATRVWLGTFETAEDAARAYDRAAIGFRGPRAKLNFPFVDYTSSVSSPVAADDIGAKASASASV 219          
BLAST of DY271219 vs. ExPASy Swiss-Prot
Match: ERF73_ARATH (Ethylene-responsive transcription factor ERF073 OS=Arabidopsis thaliana GN=ERF073 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.895e-17
Identity = 42/84 (50.00%), Postives = 56/84 (66.67%), Query Frame = 3
Query:  429 ERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDGTPAAAPKSSVKANSQKSV 680
            ++K+ ++Y+GIR+RPWG+WAAEIRDP KGVRVWLGTFNT              IRG KAK+NFP+    ++ K   KA + + V
Sbjct:   18 KKKQSSRYKGIRRRPWGRWAAEIRDPIKGVRVWLGTFNTAEEAARAYDLEAKRIRGAKAKLNFPN---ESSGKRKAKAKTVQQV 98          
BLAST of DY271219 vs. ExPASy Swiss-Prot
Match: ABR1_ARATH (Ethylene-responsive transcription factor ABR1 OS=Arabidopsis thaliana GN=ABR1 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.517e-16
Identity = 48/124 (38.71%), Postives = 64/124 (51.61%), Query Frame = 3
Query:  387 STAVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDGTPAAAPKSSV-----------KANSQKSVPKACLSPVQPSLNQN 725
            +TA    E +  S ++ R+ +YRG+RQRPWGKWAAEIRDP K  RVWLGTF+                RG KAK+NFP+      P S+               S+ S     L P++P+ NQ+
Sbjct:  165 TTATASSETSSFSGDQPRR-RYRGVRQRPWGKWAAEIRDPFKAARVWLGTFDNAESAARAYDEAALRFRGNKAKLNFPENVKLVRPASTEAQPVHQTAAQRPTQSRNSGSTTTLLPIRPASNQS 287          
BLAST of DY271219 vs. ExPASy Swiss-Prot
Match: EF115_ARATH (Ethylene-responsive transcription factor ERF115 OS=Arabidopsis thaliana GN=ERF115 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.380e-16
Identity = 47/117 (40.17%), Postives = 57/117 (48.72%), Query Frame = 3
Query:  438 RKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDGTPAAAPKSSVKANSQKSVPKACLSPVQPSLNQNFNYLKHSDQDYYNNGSILGGN 788
            RK  YRG+RQRPWGKWAAEIRDP K  RVWLGTF T               +G KAK+NFP+    A+  S+             +    P  N     + + +Q YYN     GGN
Sbjct:   88 RKRHYRGVRQRPWGKWAAEIRDPQKAARVWLGTFETAEAAALAYDNAALKFKGSKAKLNFPERAQLASNTSTTTGPPNYYSSNNQIYYSNPQTNP--QTIPYFNQYYYNQYLHQGGN 202          
BLAST of DY271219 vs. ExPASy Swiss-Prot
Match: EF110_ARATH (Ethylene-responsive transcription factor ERF110 OS=Arabidopsis thaliana GN=ERF110 PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 4.415e-16
Identity = 42/98 (42.86%), Postives = 55/98 (56.12%), Query Frame = 3
Query:  351 PFTFSAGRKSHGSTAVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDGTPAAAP 644
            P +F+    SH     + + +A     R++K +YRG+RQRPWGKWAAEIRDP +  RVWLGTF+T               RG KAK+NFP+      P
Sbjct:   45 PSSFARVDSSHNPIE-ESMSKAFPEEAREKKRRYRGVRQRPWGKWAAEIRDPHRAARVWLGTFDTAEAAARAYDEAALRFRGNKAKLNFPEDVRILPP 141          
The following BLAST results are available for this feature:
BLAST of DY271219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
RA212_ARATH4.847e-3943.37Ethylene-responsive transcription factor RAP2-12 O... [more]
RAP22_ARATH1.410e-3840.47Ethylene-responsive transcription factor RAP2-2 OS... [more]
ERF1_ORYSJ1.197e-2936.67Ethylene-responsive transcription factor 1 OS=Oryz... [more]
RAP23_ARATH7.260e-2739.00Ethylene-responsive transcription factor RAP2-3 OS... [more]
ERF71_ARATH7.277e-1962.32Ethylene-responsive transcription factor ERF071 OS... [more]
EF109_ARATH5.215e-1743.10Ethylene-responsive transcription factor ERF109 OS... [more]
ERF73_ARATH8.895e-1750.00Ethylene-responsive transcription factor ERF073 OS... [more]
ABR1_ARATH1.517e-1638.71Ethylene-responsive transcription factor ABR1 OS=A... [more]
EF115_ARATH3.380e-1640.17Ethylene-responsive transcription factor ERF115 OS... [more]
EF110_ARATH4.415e-1642.86Ethylene-responsive transcription factor ERF110 OS... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YD24FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271219 ID=DY271219; Name=DY271219; organism=Citrus clementina; type=EST; length=888bp
CAAAACTCTCTCTAGCCAACAAAAGCAAATTTTACATTTAACCCATTCTC
TCCTAAAAATCTTTTCTCTTTAGTGCCTGAACAAACCAGAAGAAACGAGA
AACCTTAACCATGTGTGGAGGTGCTATCATTTCGGGCTACATCCCGCCCA
CCGTGCCGGGCCGGCCAAAGAAGCTGACGGCGGAGTATCTCTGGCCGGAG
CTGAAGAGGTCATCCAACAAGAAGTACTCAAAGCCGATCGTCGACGATGA
CTTCGAGGCTGATTTCCAAGGATTCAAGGACGATGAAGAAGAGTCTGACA
TTGATGGTGACGTGGACGTTGATGCCGACTTGATGATGGCTGATATTAAG
CCTTTCACTTTCTCAGCTGGTCGCAAGTCTCATGGATCTACAGCCGTGAA
GCACGTTGAACAAGCTAAAAAATCCACAGAAAGAAAGAGGAAGAATCAAT
ATAGGGGAATTAGGCAGCGTCCATGGGGAAAATGGGCTGCTGAGATCCGT
GACCCCACAAAAGGGGTTCGTGTCTGGCTAGGAACTTTCAATACCGCTGA
AGAAGCCGCTAGGGCTTATGATGCCGAGGCACGGAGGATCCGTGGGAAGA
AAGCTAAGGTTAACTTTCCAGATGGAACTCCTGCTGCTGCTCCAAAGAGC
TCAGTGAAGGCAAACTCTCAGAAATCCGTTCCCAAAGCTTGCCTAAGCCC
CGTGCAGCCAAGTTTGAACCAGAACTTCAATTACTTGAAACACTCCGATC
AAGATTACTACAACAATGGGAGTATTCTGGGAGGGAACCCCCAGGGGATC
AGTATGGGAAAATGGGCCCCCTTCCGGAGGAGGGAGAACCAGAATCTAAA
CCCTTTGCCCCAAAACCCAATAACCCCCCGGCGCACTT
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