DY271243

Overview
NameDY271243
Unique NameDY271243
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length994
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271243 vs. ExPASy Swiss-Prot
Match: PAO_ARATH (Pheophorbide a oxygenase, chloroplastic OS=Arabidopsis thaliana GN=PAO PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.494e-23
Identity = 55/159 (34.59%), Postives = 84/159 (52.83%), Query Frame = 2
Query:  215 ERQVADYDWTEEWYPLYLTKDVPDDAPLGLTVFDQQIVLYKDGNGEL-RCYQDRCPHRLAKLSEGQLID-GRLECLYHGWQFEGEGKCVKIPQLPAD------AKIPRSACVRTYEVKESQGVVWVWMSQK-----TPPNPDKLPWFENFARPGFQDVS 652
            E + +++ W + WYP+ L +D+  + P    +  + +VL+ D N +    + D CPHRLA LSEG+L + G L+C YHGW F G G C +IPQ           K PR AC   +    SQG+++VW  +          P +LP  ++F +P F  V+
Sbjct:   76 EEEGSEFKWRDHWYPVSLVEDLDPNVPTPFQLLGRDLVLWFDRNDQKWAAFDDLCPHRLAPLSEGRLDENGHLQCSYHGWSFGGCGSCTRIPQAATSGPEARAVKSPR-ACAIKFPTMVSQGLLFVWPDENGWDRANSIEPPRLP--DDFDKPEFSTVT 231          

HSP 2 Score: 31.9574 bits (71), Expect = 1.494e-23
Identity = 14/37 (37.84%), Postives = 23/37 (62.16%), Query Frame = 3
Query:  672 YDHSILLENPRDPAQIPFSHDRTDWTAKKKKAQPLGF 782
            Y +  L+EN  DP+ I F+H +   T ++ +A+PL F
Sbjct:  238 YGYDTLMENVSDPSHIDFAHHKV--TGRRDRAKPLPF 272          
BLAST of DY271243 vs. ExPASy Swiss-Prot
Match: CAO_CHLRE (Chlorophyllide a oxygenase, chloroplastic OS=Chlamydomonas reinhardtii GN=CAO PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 8.231e-21
Identity = 43/128 (33.59%), Postives = 67/128 (52.34%), Query Frame = 2
Query:  251 WYPLYLTKDVPDDAPLGLTVFDQQIVLYKDGNGELRCYQDRCPHRLAKLSEGQLIDGRLECLYHGWQFEGEGKCVKIPQLPADAKIPRSACVRTYEVKESQGVVWVWMSQKTPPNPDKLPWFENFARP 634
            WYP   +  +P D  +   +F +  V+++D  G+  C +D C HR   LS G++++G++ C YHGW+F G+G C K+P  P      R+  V      E  G +WVW     P   + LP   +FA+P
Sbjct:  305 WYPAEFSARLPKDTLVPFELFGEPWVMFRDEKGQPSCIRDECAHRGCPLSLGKVVEGQVMCPYHGWEFNGDGACTKMPSTP----FCRNVGVAALPCAEKDGFIWVWPGDGLP--AETLP---DFAQP 423          

HSP 2 Score: 31.5722 bits (70), Expect = 8.231e-21
Identity = 15/39 (38.46%), Postives = 23/39 (58.97%), Query Frame = 3
Query:  627 PGQGFKMFQQSM-KLPYDHSILLENPRDPAQIPFSHDRT 740
            P +GF +  + M  +P +H +L+EN  D A  PF+H  T
Sbjct:  423 PPEGFLIHAEIMVDVPVEHGLLIENLLDLAHAPFTHTST 461          
BLAST of DY271243 vs. ExPASy Swiss-Prot
Match: CAO_ORYSJ (Chlorophyllide a oxygenase, chloroplastic OS=Oryza sativa subsp. japonica GN=CAO PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.074e-20
Identity = 38/122 (31.15%), Postives = 65/122 (53.28%), Query Frame = 2
Query:  251 WYPLYLTKDVPDDAPLGLTVFDQQIVLYKDGNGELRCYQDRCPHRLAKLSEGQLIDGRLECLYHGWQFEGEGKCVKIPQLPADAKIPRSACVRTYEVKESQGVVWVWMSQKTPPN--PDKLP 610
            WYP+  + D+ DD  + +  F++Q V+++  +G   C  + C HR   L  G + +GR++C YHGW++  +GKC K+P          +  +R+    E +G+VW+W     P +  P  LP
Sbjct:  220 WYPVAFSSDLKDDTMVPIDCFEEQWVIFRGKDGRPGCVMNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTKM-----LNVRIRSLPCFEQEGMVWIWPGNDPPKSTIPSLLP 336          

HSP 2 Score: 34.2686 bits (77), Expect = 1.074e-20
Identity = 17/40 (42.50%), Postives = 24/40 (60.00%), Query Frame = 3
Query:  624 LPGQGFKMFQQS-MKLPYDHSILLENPRDPAQIPFSHDRT 740
            LP  GF +  +  M+LP +H +LL+N  D A  PF+H  T
Sbjct:  335 LPPSGFTIHAEIVMELPVEHGLLLDNLLDLAHAPFTHTST 374          
BLAST of DY271243 vs. ExPASy Swiss-Prot
Match: CAO_ARATH (Chlorophyllide a oxygenase, chloroplastic OS=Arabidopsis thaliana GN=CAO PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.256e-19
Identity = 49/173 (28.32%), Postives = 81/173 (46.82%), Query Frame = 2
Query:   86 VIISLNKTPKSRKCHAVT-DRSSTSTVGDHKVLVGPASAEERRGERQVADYDWTEEWYPLYLTKDVPDDAPLGLTVFDQQIVLYKDGNGELRCYQDRCPHRLAKLSEGQLIDGRLECLYHGWQFEGEGKCVKIPQLP-ADAKIPRSACVRTYEVKESQGVVWVWMSQKTPPNP 598
            V+  L+K   S    AV  DR  T+T      + GP        +           WYP+  T D+  D  + +  F+Q  V+++  +G+  C ++ C HR   L  G + +GR++C YHGW++  +G+C K+P       KI    C+      E +G++W+W   + PP P
Sbjct:  174 VVTELDKPSSSTTASAVELDREKTNTGAKSLNVSGPVPPYSPHLKNF---------WYPVAFTADLKHDTMVPIECFEQPWVIFRGEDGKPGCVRNTCAHRACPLDLGTVNEGRIQCPYHGWEYSTDGECKKMPSTKLLKVKIKSLPCL------EQEGMIWIWPGDE-PPAP 330          

HSP 2 Score: 31.5722 bits (70), Expect = 4.256e-19
Identity = 16/39 (41.03%), Postives = 22/39 (56.41%), Query Frame = 3
Query:  627 PGQGFKMFQQS-MKLPYDHSILLENPRDPAQIPFSHDRT 740
            P  GF +  +  M LP +H +LL+N  D A  PF+H  T
Sbjct:  337 PPSGFLIHAELVMDLPVEHGLLLDNLLDLAHAPFTHTST 375          
BLAST of DY271243 vs. ExPASy Swiss-Prot
Match: CAO_DUNSA (Chlorophyllide a oxygenase, chloroplastic OS=Dunaliella salina GN=CAO PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 7.220e-19
Identity = 43/138 (31.16%), Postives = 63/138 (45.65%), Query Frame = 2
Query:  185 GPASAEERRGERQVADYDWTEE-WYPLYLTKDVPDDAPLGLTVFDQQIVLYKDGNGELRCYQDRCPHRLAKLSEGQLIDGRLECLYHGWQFEGEGKCVKIPQLPADAKIPRSACVRTYEVKESQGVVWVWMSQKTPPN 595
            GP   + RR    +   D     WYP    K +     +   +F    VL++D +    C +D C HR   LS G++I+G ++C YHGW+F+G G C K+P      ++     V      E  G VWVW     PP+
Sbjct:  111 GPKPKDSRRLRSSLELEDGLRNFWYPTEFAKKLEPGMMVPFDLFGVPWVLFRDEHSAPTCIKDSCAHRACPLSLGKVINGHVQCPYHGWEFDGSGACTKMP----STRMCHGVGVAALPCVEKDGFVWVWPGDGPPPD 244          

HSP 2 Score: 31.187 bits (69), Expect = 7.220e-19
Identity = 15/41 (36.59%), Postives = 23/41 (56.10%), Query Frame = 3
Query:  621 TLPGQGFKMFQQSM-KLPYDHSILLENPRDPAQIPFSHDRT 740
            T P  G+ +  + M  +P +H +L+EN  D A  PF+H  T
Sbjct:  250 TAPPAGYDVHAEIMVDVPVEHGLLMENLLDLAHAPFTHTTT 290          
BLAST of DY271243 vs. ExPASy Swiss-Prot
Match: CBAA_COMTE (3-chlorobenzoate-3,4-dioxygenase oxygenase subunit OS=Comamonas testosteroni GN=cbaA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 8.108e-17
Identity = 42/114 (36.84%), Postives = 65/114 (57.02%), Query Frame = 2
Query:  245 EEWYP-LYLTKDVPDDAPLGLTVFDQQIVLYKDGNGELRCYQDRCPHRLAKLSEGQLIDGRLECLYHGWQFEGEGKCVKIPQLPADAKIPRSACVRTYEVKESQGVVWVWMSQK 583
            E W P L  T+     +P+ L +  +++V +++ +G +     RCPHR   L  G++ +G L C+YHGW+F  EGKCV +P +  + +   S  V  Y VKE  GVVWV+M  +
Sbjct:   25 EYWIPALKSTELEAGGSPVRLLLLGEKLVAFREPSGAVGVMDSRCPHRGVSLFMGRVEEGGLRCVYHGWKFSAEGKCVDMPSVRPEDEFKNSVRVARYPVKEMAGVVWVYMGTR 138          
BLAST of DY271243 vs. ExPASy Swiss-Prot
Match: VANA_PSEUH (Vanillate O-demethylase oxygenase subunit OS=Pseudomonas sp. (strain HR199 / DSM 7063) GN=vanA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 7.589e-15
Identity = 44/127 (34.65%), Postives = 67/127 (52.76%), Query Frame = 2
Query:  251 WYPLYLTKDVPDDAPLGLTVFDQQIVLYKDGNGELRCYQDRCPHRLAKLSEGQLIDGRLECLYHGWQFEGEGKCVKIPQLPADAKIPRSACVRTYEVKESQGVVWVWMSQKTPPNP---DKLPWFEN 622
            WY +  T D   D PLG  + +++IV Y+   G +   +D CPHR A LS G + DG+L C YHG +   EGK + +P      ++    C+++Y V+E  G +WVW   +   +P     L W +N
Sbjct:    7 WY-VACTPDEIADKPLGRQICNEKIVFYRGPEGRVAAVEDFCPHRGAPLSLGFVRDGKLICGYHGLEMGCEGKTLAMP----GQRVQGFPCIKSYAVEERYGFIWVWPGDRELADPALIHHLEWADN 128          
BLAST of DY271243 vs. ExPASy Swiss-Prot
Match: PHT3_PSEPU (Phthalate 4,5-dioxygenase oxygenase subunit OS=Pseudomonas putida GN=pht3 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.582e-12
Identity = 37/124 (29.84%), Postives = 65/124 (52.42%), Query Frame = 2
Query:  251 WYPLYLTKDV--PDDAPLGLTVFDQQIVLYKDGNGELRCYQDRCPHRLAKLSEGQLIDGRLECLYHGWQFEGEGKCVKIPQLPADAKIPRSACVRTYEVKESQGVVWVWMSQKTPPNPDKLPWF 616
            W P+ L ++V  PD  P+   +F + +V+++D +G +    + CPHR   L  G+  +  L CLYHGW+ + +G  V++   PA + + +      Y+ +E  G VW +M  +     D +P F
Sbjct:   27 WTPVCLLEEVSEPDGTPVRARLFGEDLVVFRDTDGRVGVMDEYCPHRRVSLIYGRNENSGLRCLYHGWKMDVDGNVVEMVSEPAASNMCQKVKHTAYKTREWGGFVWAYMGPQ-----DAIPEF 145          
BLAST of DY271243 vs. ExPASy Swiss-Prot
Match: VANA_PSES9 (Vanillate O-demethylase oxygenase subunit OS=Pseudomonas sp. (strain ATCC 19151) GN=vanA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 5.090e-11
Identity = 32/108 (29.63%), Postives = 55/108 (50.93%), Query Frame = 2
Query:  308 VFDQQIVLYKDGNGELRCYQDRCPHRLAKLSEGQLIDGRLECLYHGWQFEGEGKCVKIPQLPADAKIPRSACVRTYEVKESQGVVWVWMSQKTPPNPDKLP---WFEN 622
            + ++++V+Y+     +   +D CPHR A LS G + DG+L C YHG   + +G+   +P      ++    C+R +  +E  G +WVW       +P  +P   W EN
Sbjct:    2 ICNERMVIYRGAGQRVAALEDFCPHRGAPLSLGSIQDGKLVCGYHGLVMDCDGRTASMPA----QRVQAFPCIRAFPAQERHGFIWVWPGDAALADPALIPHLEWAEN 105          
The following BLAST results are available for this feature:
BLAST of DY271243 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
PAO_ARATH1.494e-2334.59Pheophorbide a oxygenase, chloroplastic OS=Arabido... [more]
CAO_CHLRE8.231e-2133.59Chlorophyllide a oxygenase, chloroplastic OS=Chlam... [more]
CAO_ORYSJ1.074e-2031.15Chlorophyllide a oxygenase, chloroplastic OS=Oryza... [more]
CAO_ARATH4.256e-1928.32Chlorophyllide a oxygenase, chloroplastic OS=Arabi... [more]
CAO_DUNSA7.220e-1931.16Chlorophyllide a oxygenase, chloroplastic OS=Dunal... [more]
CBAA_COMTE8.108e-1736.843-chlorobenzoate-3,4-dioxygenase oxygenase subunit... [more]
VANA_PSEUH7.589e-1534.65Vanillate O-demethylase oxygenase subunit OS=Pseud... [more]
PHT3_PSEPU1.582e-1229.84Phthalate 4,5-dioxygenase oxygenase subunit OS=Pse... [more]
VANA_PSES95.090e-1129.63Vanillate O-demethylase oxygenase subunit OS=Pseud... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP9YF09FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271243 ID=DY271243; Name=DY271243; organism=Citrus clementina; type=EST; length=994bp
CATTATGGCTTTATCATTACGCTCGTTATTCTTTAGCCCACTTCTCAAGA
TCCCCTCTCCAAAACTTACACCACCAACTACAAATGTTATAATAAGCTTA
AACAAAACACCTAAGTCGAGAAAATGCCATGCAGTGACAGATAGGAGCAG
TACTAGTACTGTTGGTGATCATAAGGTTCTTGTGGGGCCTGCTAGTGCTG
AGGAAAGGAGAGGAGAGAGACAGGTGGCAGATTATGATTGGACAGAAGAG
TGGTATCCTTTGTATCTCACTAAGGATGTTCCGGATGATGCACCTTTGGG
CCTAACTGTGTTTGATCAGCAGATAGTATTGTATAAAGATGGCAACGGGG
AGCTTCGGTGTTATCAAGATCGGTGCCCCCATAGGTTAGCAAAACTTTCT
GAAGGCCAACTGATCGACGGCAGGCTTGAATGTTTGTACCATGGCTGGCA
GTTTGAAGGCGAGGGTAAATGCGTTAAGATACCTCAGCTTCCAGCTGATG
CTAAAATTCCTCGATCGGCTTGCGTTAGAACATACGAGGTGAAGGAATCT
CAAGGTGTTGTATGGGTTTGGATGTCACAAAAAACACCGCCTAACCCTGA
TAAGCTTCCATGGTTTGAGAACTTTGCCAGGCCAGGGTTTCAAGATGTTT
CAACAATCCATGAAACTTCCATATGATCACTCCATTCTCCTTGAAAACCC
CAGGGATCCCGCCCAAATCCCATTTTCACACGATAGGACCGACTGGACTG
CTAAAAAAAAAAAAGCCCAACCTCTTGGGTTTTGAGGTTACTGAACAGAC
AAATCACAGGTTTGCGCGGGCAGGAGGAGAAGGGAAAAAAAAGAACCCGC
ATGCCAAATTTTTTTCAAATTTGGAAGGCCCCGGGTTGTCTATTCAAATC
AACCGAATAACTGGGCAACAGTCAGAACAGGGAAAAAAAACCCCTACCTG
CAAAGGTCCATTCCCCCCAGAAATAACCATCAACGAAAATGAAA
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