DY271249

Overview
NameDY271249
Unique NameDY271249
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1049
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271249 vs. ExPASy Swiss-Prot
Match: SBP_ARATH (Putative selenium-binding protein OS=Arabidopsis thaliana GN=At4g14030 PE=2 SV=1)

HSP 1 Score: 331.257 bits (848), Expect = 5.911e-90
Identity = 168/306 (54.90%), Postives = 213/306 (69.61%), Query Frame = 1
Query:   70 MATDTAVAEHRSSNNG--HGCCAKG-PGYATPLDAMSGPREKLLYVTCLYTGTGREKPDYLATVDADPSSSSYSKVIHRLPVPYIGDELHHSGWNSCSSCYGDSSAQRRFLVLPSLVSGRIYIVDTQKNPRAPSLHKVVEPADIVQKTGLSYPHTAHCLASGDILVSCLGNKDGNAEGNGFLLLDSKFNVKRKWEKPGHSPAFG*DFW-DXXXXXXXXXXXXXXXGFPQSFNL-HQSLKVFMEASCLLTLAEGEFKKKLILEKQAPNPWKKRSWLNPPKKKGFKVWP*TNTQVRFFKPKKDKGNRE 972
            MAT+T V    + +NG   GCC  G PGYATPL AMSGP EKL+YVT +YTGTG +KPDYLATVD DPSS SYS VIHRLP+P++GDELHHSGWNSCSSC+GD+S  RR+LVLPSL+SGRIY +DT++NPRAPSL+K V+P +I  KTGL++PHTAHCLA+G+ILVSCLG+++GNA+GNGFLLLDS FN+K +WEKPGHSP +G DFW                  F + FNL H +  ++     + +   GE K+ + L      P + R   +P K  GF     ++  +RFFK   +  + E
Sbjct:    1 MATETEVVAPVTVSNGGSKGCCKYGGPGYATPLAAMSGPSEKLIYVTAVYTGTGIDKPDYLATVDVDPSSPSYSSVIHRLPMPFVGDELHHSGWNSCSSCHGDASVDRRYLVLPSLISGRIYAIDTKENPRAPSLYKYVDPKEIADKTGLAFPHTAHCLATGEILVSCLGDEEGNAKGNGFLLLDSDFNIKNRWEKPGHSPLYGYDFWYQPRHKTMISTSWGAPKAFSKGFNLQHVADGLYGSHLHVYSWPGGEIKQLIDLGPTGLLPLEIRFLHDPSKDTGFVGSALSSNMIRFFKNSDETWSHE 306          
BLAST of DY271249 vs. ExPASy Swiss-Prot
Match: SBP1A_XENLA (Selenium-binding protein 1-A OS=Xenopus laevis GN=selenbp1-A PE=2 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 4.265e-64
Identity = 113/188 (60.11%), Postives = 140/188 (74.47%), Query Frame = 1
Query:  124 CCAKGPGYATPLDAMSGPREKLLYVTCLYTGTGREKPDYLATVDADPSSSSYSKVIHRLPVPYIGDELHHSGWNSCSSCYGDSSAQRRFLVLPSLVSGRIYIVDTQKNPRAPSLHKVVEPADIVQKTGLSYPHTAHCLASGDILVSCLGNKDGNAEGNGFLLLDSK-FNVKRKWEKPGHSPAFG*DFW 684
            C + GPGY +PLDAM GPRE+++Y+ C+Y  TG  KPDYLATVD DP S SYS+VIHRLP+P + DELHHSGWN+CSSCYGDSS  R  L+LP L+S RIY+VD   +PRAP +HK VEP ++  K GL+ PHT+HCL  G+I++S LG+  GN +G GF+LLD + F VK  WE  G S  FG DFW
Sbjct:    4 CGSCGPGYKSPLDAMKGPREEIVYLPCIYRSTGINKPDYLATVDVDPKSPSYSQVIHRLPMPNVNDELHHSGWNTCSSCYGDSSKVRNKLILPCLISSRIYVVDVGSDPRAPRIHKTVEPYEVFWKCGLANPHTSHCLGCGEIMISSLGDPCGNGKG-GFVLLDGETFEVKGNWEVEGESAQFGYDFW 190          
BLAST of DY271249 vs. ExPASy Swiss-Prot
Match: SBP1_RAT (Selenium-binding protein 1 OS=Rattus norvegicus GN=Selenbp1 PE=1 SV=1)

HSP 1 Score: 244.202 bits (622), Expect = 9.502e-64
Identity = 112/188 (59.57%), Postives = 140/188 (74.47%), Query Frame = 1
Query:  124 CCAKGPGYATPLDAMSGPREKLLYVTCLYTGTGREKPDYLATVDADPSSSSYSKVIHRLPVPYIGDELHHSGWNSCSSCYGDSSAQRRFLVLPSLVSGRIYIVDTQKNPRAPSLHKVVEPADIVQKTGLSYPHTAHCLASGDILVSCLGNKDGNAEGNGFLLLDSK-FNVKRKWEKPGHSPAFG*DFW 684
            C   GPGYATPL+AM GPRE+++Y+ C+Y  TG E PDYLATVD DP S  YS+VIHRLP+P++ DELHHSGWN+CSSC+GDS+  R  L+LPS++S RIY+VD    PRAP LHKV+EP +I  K  L   HT+HCLASG++++S LG+  GN +G GF+LLD + F VK  WEKPG     G DFW
Sbjct:    5 CTKCGPGYATPLEAMKGPREEIVYLPCIYRNTGIEAPDYLATVDVDPKSPHYSQVIHRLPMPHLKDELHHSGWNTCSSCFGDSTKSRDKLILPSIISSRIYVVDVGSEPRAPKLHKVIEPNEIHAKCNLGNLHTSHCLASGEVMISSLGDPQGNGKG-GFVLLDGETFEVKGTWEKPGGEAPMGYDFW 191          
BLAST of DY271249 vs. ExPASy Swiss-Prot
Match: SBP1_MOUSE (Selenium-binding protein 1 OS=Mus musculus GN=Selenbp1 PE=1 SV=2)

HSP 1 Score: 243.817 bits (621), Expect = 1.241e-63
Identity = 109/187 (58.29%), Postives = 137/187 (73.26%), Query Frame = 1
Query:  124 CCAKGPGYATPLDAMSGPREKLLYVTCLYTGTGREKPDYLATVDADPSSSSYSKVIHRLPVPYIGDELHHSGWNSCSSCYGDSSAQRRFLVLPSLVSGRIYIVDTQKNPRAPSLHKVVEPADIVQKTGLSYPHTAHCLASGDILVSCLGNKDGNAEGNGFLLLDSKFNVKRKWEKPGHSPAFG*DFW 684
            C   GPGY+TPL+AM GPRE+++Y+ C+Y  TG E PDYLATVD DP S  YS+VIHRLP+PY+ DELHHSGWN+CSSC+GDS+  R  L+LP L+S RIY+VD    PRAP LHKV+E ++I  K  +S  HT+HCLASG+++VS LG+  GN +G+  LL    F VK  WEKPG +   G DFW
Sbjct:    5 CTKCGPGYSTPLEAMKGPREEIVYLPCIYRNTGTEAPDYLATVDVDPKSPQYSQVIHRLPMPYLKDELHHSGWNTCSSCFGDSTKSRNKLILPGLISSRIYVVDVGSEPRAPKLHKVIEASEIQAKCNVSSLHTSHCLASGEVMVSTLGDLQGNGKGSFVLLDGETFEVKGTWEKPGDAAPMGYDFW 191          
BLAST of DY271249 vs. ExPASy Swiss-Prot
Match: SBP1_HUMAN (Selenium-binding protein 1 OS=Homo sapiens GN=SELENBP1 PE=1 SV=2)

HSP 1 Score: 243.047 bits (619), Expect = 2.117e-63
Identity = 112/188 (59.57%), Postives = 141/188 (75.00%), Query Frame = 1
Query:  124 CCAKGPGYATPLDAMSGPREKLLYVTCLYTGTGREKPDYLATVDADPSSSSYSKVIHRLPVPYIGDELHHSGWNSCSSCYGDSSAQRRFLVLPSLVSGRIYIVDTQKNPRAPSLHKVVEPADIVQKTGLSYPHTAHCLASGDILVSCLGNKDGNAEGNGFLLLDSK-FNVKRKWEKPGHSPAFG*DFW 684
            C   GPGY+TPL+AM GPRE+++Y+ C+Y  TG E PDYLATVD DP S  Y +VIHRLP+P + DELHHSGWN+CSSC+GDS+  R  LVLPSL+S RIY+VD    PRAP LHKV+EP DI  K  L++ HT+HCLASG++++S LG+  GN +G GF+LLD + F VK  WE+PG +   G DFW
Sbjct:    5 CGNCGPGYSTPLEAMKGPREEIVYLPCIYRNTGTEAPDYLATVDVDPKSPQYCQVIHRLPMPNLKDELHHSGWNTCSSCFGDSTKSRTKLVLPSLISSRIYVVDVGSEPRAPKLHKVIEPKDIHAKCELAFLHTSHCLASGEVMISSLGDVKGNGKG-GFVLLDGETFEVKGTWERPGGAAPLGYDFW 191          
BLAST of DY271249 vs. ExPASy Swiss-Prot
Match: SBP2_MOUSE (Selenium-binding protein 2 OS=Mus musculus GN=Selenbp2 PE=1 SV=2)

HSP 1 Score: 242.276 bits (617), Expect = 3.611e-63
Identity = 108/187 (57.75%), Postives = 136/187 (72.73%), Query Frame = 1
Query:  124 CCAKGPGYATPLDAMSGPREKLLYVTCLYTGTGREKPDYLATVDADPSSSSYSKVIHRLPVPYIGDELHHSGWNSCSSCYGDSSAQRRFLVLPSLVSGRIYIVDTQKNPRAPSLHKVVEPADIVQKTGLSYPHTAHCLASGDILVSCLGNKDGNAEGNGFLLLDSKFNVKRKWEKPGHSPAFG*DFW 684
            C   GPGY TPL+AM GPRE+++Y+ C+Y  TG E PDYLATVD DP S  YS+VIHRLP+PY+ DELHHSGWN+CSSC+GDS+  R  L+LP L+S RIY+VD    PRAP LHKV+E ++I  K  +S  HT+HCLASG+++V+ LG+  GN +G+  LL    F VK  WEKPG +   G DFW
Sbjct:    5 CTKCGPGYPTPLEAMKGPREEIVYLPCIYRNTGTEAPDYLATVDVDPKSPQYSQVIHRLPMPYLKDELHHSGWNTCSSCFGDSTKSRNKLILPGLISSRIYVVDVGSEPRAPKLHKVIEASEIQAKCNVSNTHTSHCLASGEVMVNTLGDLQGNGKGSFVLLDGETFEVKGTWEKPGGASPMGYDFW 191          
BLAST of DY271249 vs. ExPASy Swiss-Prot
Match: SBP1_BOVIN (Selenium-binding protein 1 OS=Bos taurus GN=SELENBP1 PE=1 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 3.611e-63
Identity = 113/188 (60.11%), Postives = 142/188 (75.53%), Query Frame = 1
Query:  127 CAK-GPGYATPLDAMSGPREKLLYVTCLYTGTGREKPDYLATVDADPSSSSYSKVIHRLPVPYIGDELHHSGWNSCSSCYGDSSAQRRFLVLPSLVSGRIYIVDTQKNPRAPSLHKVVEPADIVQKTGLSYPHTAHCLASGDILVSCLGNKDGNAEGNGFLLLDSK-FNVKRKWEKPGHSPAFG*DFW 684
            C K GPGY +PL+AM GPRE+L+Y+ C+Y  TG E PDYLATVD +P S  YS+VIHRLP+P + DELHHSGWN+CSSC+GDS+  R  L+LPSL+S R+Y+VD    PRAP LHKVVEP +I  K  LSY HT+HCLASG++++S LG+  GN +G GF+LLD + F VK  WE+PG +   G DFW
Sbjct:    5 CGKCGPGYPSPLEAMKGPREELVYLPCIYRNTGTEAPDYLATVDVNPKSPQYSQVIHRLPMPNLKDELHHSGWNTCSSCFGDSTKSRTKLLLPSLISSRVYVVDVATEPRAPKLHKVVEPEEIHAKCDLSYLHTSHCLASGEVMISALGDPRGNGKG-GFVLLDGETFEVKGTWEQPGGAAPMGYDFW 191          
BLAST of DY271249 vs. ExPASy Swiss-Prot
Match: SBP1B_XENLA (Selenium-binding protein 1-B OS=Xenopus laevis GN=selenbp1-B PE=2 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 1.372e-62
Identity = 128/285 (44.91%), Postives = 171/285 (60.00%), Query Frame = 1
Query:  124 CCAKGPGYATPLDAMSGPREKLLYVTCLYTGTGREKPDYLATVDADPSSSSYSKVIHRLPVPYIGDELHHSGWNSCSSCYGDSSAQRRFLVLPSLVSGRIYIVDTQKNPRAPSLHKVVEPADIVQKTGLSYPHTAHCLASGDILVSCLGNKDGNAEGNGFLLLDSK-FNVKRKWEKPGHSPAFG*DFWDXXXXXXXXXXXXXXXGFPQSFNLHQSLKVFMEASCLLTL-----AEGEFKKKLILEKQAPNPWKKRSWLNPPKKKGFKVWP*TNTQVRFFKPKKDK 960
            C + GPGY +PLDAM GPRE+++Y+ C+Y  TG  KPDYLATVD DP S +YS+VIHRLP+P + DELHHSGWN+CSSCYGDSS  R  L+LP L+S R+Y+VD   +PRAP LHK VEP ++  K GL+  HT+HCL  G+I++S LG+  GN +G GF+LLD + F VK  WE  G +  FG DFW                G P++F L   ++  +      +L      E    + + L K    P + R   NP   +G      +++  RF+K K  K
Sbjct:    4 CGSCGPGYKSPLDAMKGPREEIVYLPCIYRSTGINKPDYLATVDVDPKSPTYSQVIHRLPMPNVNDELHHSGWNTCSSCYGDSSKVRNKLILPCLISSRVYVVDVGTDPRAPRLHKTVEPHEVYWKCGLANLHTSHCLGCGEIMISALGDPCGNGKG-GFVLLDGETFEVKGNWEAEGETAQFGYDFW---YQPRHNVMISTEWGAPKAFALGFKMEDVLAGQYGHSLNVWDWTEHRLVQTIDLGKDGLIPLEIRFLHNPDADQGLVGCALSSSIFRFYKEKDGK 284          
BLAST of DY271249 vs. ExPASy Swiss-Prot
Match: SBP1_DANRE (Selenium-binding protein 1 OS=Danio rerio GN=selenbp1 PE=2 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 3.057e-62
Identity = 109/188 (57.98%), Postives = 139/188 (73.94%), Query Frame = 1
Query:  124 CCAKGPGYATPLDAMSGPREKLLYVTCLYTGTGREKPDYLATVDADPSSSSYSKVIHRLPVPYIGDELHHSGWNSCSSCYGDSSAQRRFLVLPSLVSGRIYIVDTQKNPRAPSLHKVVEPADIVQKTGLSYPHTAHCLASGDILVSCLGNKDGNAEGNGFLLLDSK-FNVKRKWEKPGHSPAFG*DFW 684
            C   GPGY TPLDAM GPRE+++Y+ C+Y  T  +KPDYLATVD +P S ++ KVIHRLP+P + DELHHSGWN+CSSC+ D S +R  L+LPSL+S RIY+VD   +PRAP LHK VEP D+  K GL+ PHT+HCL SG I++S +G+  GN +G GF+LLD + F V   WE+PG +  FG DFW
Sbjct:    5 CSGCGPGYKTPLDAMKGPREEIVYLPCIYRNTDIQKPDYLATVDINPQSPNFCKVIHRLPMPNLKDELHHSGWNACSSCFDDPSKRRNRLILPSLISSRIYVVDVGTDPRAPRLHKTVEPTDLFWKCGLANPHTSHCLGSGQIMISTMGDPSGNGKG-GFVLLDGETFEVIGNWEQPGDAAPFGYDFW 191          
BLAST of DY271249 vs. ExPASy Swiss-Prot
Match: SBP1_XENTR (Selenium-binding protein 1 OS=Xenopus tropicalis GN=selenbp1 PE=2 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 2.588e-61
Identity = 109/188 (57.98%), Postives = 137/188 (72.87%), Query Frame = 1
Query:  124 CCAKGPGYATPLDAMSGPREKLLYVTCLYTGTGREKPDYLATVDADPSSSSYSKVIHRLPVPYIGDELHHSGWNSCSSCYGDSSAQRRFLVLPSLVSGRIYIVDTQKNPRAPSLHKVVEPADIVQKTGLSYPHTAHCLASGDILVSCLGNKDGNAEGNGFLLLDSK-FNVKRKWEKPGHSPAFG*DFW 684
            C + GPGY TPLDAM GPRE++LY+ C+Y  TG  KPDYLATVD +P S  YS+VIHRLP+P   DELHHSGWN+CSSCYGD+S  R  L+LP L+S RIY+VD   +PRAP +HK VEP ++  K GL+  HT+HCL  G+I++S +G+  GN +G GF+LLD + F VK  WE  G +  FG DFW
Sbjct:    4 CGSCGPGYKTPLDAMKGPREEILYLPCIYRNTGINKPDYLATVDVNPKSPKYSQVIHRLPMPNTNDELHHSGWNTCSSCYGDASKVRNKLILPCLISSRIYVVDVGTDPRAPRIHKTVEPYEVFWKCGLANLHTSHCLGCGEIMISSIGDPYGNGKG-GFVLLDGETFEVKGNWEAEGEAAPFGYDFW 190          
The following BLAST results are available for this feature:
BLAST of DY271249 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
SBP_ARATH5.911e-9054.90Putative selenium-binding protein OS=Arabidopsis t... [more]
SBP1A_XENLA4.265e-6460.11Selenium-binding protein 1-A OS=Xenopus laevis GN=... [more]
SBP1_RAT9.502e-6459.57Selenium-binding protein 1 OS=Rattus norvegicus GN... [more]
SBP1_MOUSE1.241e-6358.29Selenium-binding protein 1 OS=Mus musculus GN=Sele... [more]
SBP1_HUMAN2.117e-6359.57Selenium-binding protein 1 OS=Homo sapiens GN=SELE... [more]
SBP2_MOUSE3.611e-6357.75Selenium-binding protein 2 OS=Mus musculus GN=Sele... [more]
SBP1_BOVIN3.611e-6360.11Selenium-binding protein 1 OS=Bos taurus GN=SELENB... [more]
SBP1B_XENLA1.372e-6244.91Selenium-binding protein 1-B OS=Xenopus laevis GN=... [more]
SBP1_DANRE3.057e-6257.98Selenium-binding protein 1 OS=Danio rerio GN=selen... [more]
SBP1_XENTR2.588e-6157.98Selenium-binding protein 1 OS=Xenopus tropicalis G... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YF18FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271249 ID=DY271249; Name=DY271249; organism=Citrus clementina; type=EST; length=1049bp
TTCGCTTCCTATCTTGATCTTTCTTCAAAGTCTTTGTGTTGTTCTGTCTG
TGTTTTTTTCTTGTAAGAAATGGCAACTGATACTGCGGTGGCTGAACACC
GGTCGAGCAATAATGGCCATGGTTGCTGCGCGAAAGGGCCTGGGTATGCA
ACTCCACTCGATGCCATGTCTGGTCCTAGAGAGAAACTTCTCTATGTCAC
TTGTCTTTACACTGGTACTGGAAGAGAGAAGCCTGATTACCTAGCGACAG
TGGATGCGGATCCTAGCTCTTCTTCTTATTCAAAAGTTATTCATCGGCTC
CCTGTGCCATACATTGGCGATGAACTACATCATTCGGGATGGAATTCATG
TAGCTCATGCTATGGAGATTCATCTGCTCAACGGCGTTTTCTTGTCTTGC
CTTCTTTGGTATCTGGTCGTATATACATAGTTGACACACAAAAAAATCCA
AGGGCTCCCTCTTTGCATAAAGTTGTTGAGCCTGCAGATATTGTACAGAA
GACAGGATTATCTTATCCTCACACGGCTCATTGCCTTGCTTCTGGTGATA
TCCTGGTGTCATGCCTTGGAAATAAAGATGGAAATGCTGAGGGAAATGGA
TTTCTTCTCCTTGACTCAAAATTCAATGTGAAAAGAAAATGGGAAAAACC
AGGTCACAGTCCTGCTTTCGGTTAAGATTTCTGGGACCACCCTCCACACA
AAAAATGAATACCTCATCATGGGAAGAACCCTGGGTTTCCCCAAAGCTTC
AACCTTCACCAGTCCCTGAAGGTCTTTATGGAGGCATCCTGTTTGTTAAC
ACTGGCCGAAGGGGAATTTAAAAAAAAATTAATTTTGGAAAAACAGGCCC
CAAACCCCTGGAAAAAAAGGTCTTGGCTGAACCCCCCAAAAAAAAAAGGG
TTTAAGGTTTGGCCCTAAACAAATACCCAGGTTCGTTTTTTCAAACCCAA
AAAGGATAAGGGAAACCGAGAGTGGCAAAAAACAGAAAATCCCCCAAAGG
GGAAAAATTGAAATTTTCCAAAAAAGCCGGGGCTTTTAAATATTTTTTA
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