DY271251

Overview
NameDY271251
Unique NameDY271251
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1014
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271251 vs. ExPASy Swiss-Prot
Match: IF4G1_ARATH (Eukaryotic translation initiation factor 4G OS=Arabidopsis thaliana GN=EIF4G PE=1 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 2.465e-45
Identity = 101/168 (60.12%), Postives = 123/168 (73.21%), Query Frame = 2
Query:    2 LMHSCIKKLLGQYENPDEEDVEALCILMSTIGEMIDHPKAKEHMYAYFDRMEKLSNNMKLSSRVRLMLKDSIELRKNKWQQRRKVEGPKKIEEVHRDAAQERQAQASRLARGPSMNSSSRRAPMDF-GPRG----LSSPTTQM------PRERHL-GRDKRRENGPGY 469
            +MH+CI+KLLG  ++P EE++EALC LMSTIG MIDH KAK  M  YF++M+ LS   +LSSRVR ML ++I+LRKNKWQ+R KVEGPKKIEEVHRDAAQERQ QA+RL+RGPSMNSS RR  M+F  PRG    LS P  QM      P+ R    +D R ++ P Y
Sbjct: 1240 IMHACIQKLLGYNQDPHEENIEALCKLMSTIGVMIDHNKAKFQMDGYFEKMKMLSCKQELSSRVRFMLINAIDLRKNKWQERMKVEGPKKIEEVHRDAAQERQTQANRLSRGPSMNSSGRRGHMEFSSPRGGGGMLSPPAAQMGSYHGPPQGRGFSNQDIRFDDRPSY 1407          

HSP 2 Score: 70.8626 bits (172), Expect = 1.365e-11
Identity = 34/51 (66.67%), Postives = 42/51 (82.35%), Query Frame = 2
Query:  686 IGRLNAPNFQKLFEQVKAVNIDNAVTLAGVVSQIFDKPLMDANFWEM*ANF 838
            + +L   NF+KLFEQVK+VNIDNAVTL+GV+SQIFDK LM+  F EM A+F
Sbjct: 1101 LNKLTPQNFEKLFEQVKSVNIDNAVTLSGVISQIFDKALMEPTFCEMYADF 1151          
BLAST of DY271251 vs. ExPASy Swiss-Prot
Match: IF4G1_MOUSE (Eukaryotic translation initiation factor 4 gamma 1 OS=Mus musculus GN=Eif4g1 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.900e-21
Identity = 53/130 (40.77%), Postives = 81/130 (62.31%), Query Frame = 2
Query:    2 LMHSCIKKLLGQYENPDEEDVEALCILMSTIGEMIDHPKAKEHMYAYFDRMEKLSNNMKLSSRVRLMLKDSIELRKNKWQQRRKVEGPKKIEEVHRDAAQERQAQASRLARGPSMNSSSRRAPMDFGPRG 391
            +MH C+ KLL   +N DEE +E LC L++TIG+ +D  KAK  M  YF++MEK+    K SSR+R ML+D ++LR++ W  RR  +GPK I+++H++A  E   +  ++ +  +  S  RR     GP G
Sbjct:  919 IMHDCVVKLL---KNHDEESLECLCRLLTTIGKDLDFAKAKPRMDQYFNQMEKIIKEKKTSSRIRFMLQDVLDLRQSNWVPRRGDQGPKTIDQIHKEAEMEEHREHIKVQQLMAKGSDKRRG----GPPG 1041          
BLAST of DY271251 vs. ExPASy Swiss-Prot
Match: IF4G1_HUMAN (Eukaryotic translation initiation factor 4 gamma 1 OS=Homo sapiens GN=EIF4G1 PE=1 SV=3)

HSP 1 Score: 102.449 bits (254), Expect = 4.233e-21
Identity = 53/130 (40.77%), Postives = 80/130 (61.54%), Query Frame = 2
Query:    2 LMHSCIKKLLGQYENPDEEDVEALCILMSTIGEMIDHPKAKEHMYAYFDRMEKLSNNMKLSSRVRLMLKDSIELRKNKWQQRRKVEGPKKIEEVHRDAAQERQAQASRLARGPSMNSSSRRAPMDFGPRG 391
            +MH C+ KLL   +N DEE +E LC L++TIG+ +D  KAK  M  YF++MEK+    K SSR+R ML+D ++LR + W  RR  +GPK I+++H++A  E   +  ++ +  +  S  RR     GP G
Sbjct:  916 IMHDCVVKLL---KNHDEESLECLCRLLTTIGKDLDFEKAKPRMDQYFNQMEKIIKEKKTSSRIRFMLQDVLDLRGSNWVPRRGDQGPKTIDQIHKEAEMEEHREHIKVQQLMAKGSDKRRG----GPPG 1038          
BLAST of DY271251 vs. ExPASy Swiss-Prot
Match: IF4G3_MOUSE (Eukaryotic translation initiation factor 4 gamma 3 OS=Mus musculus GN=Eif4g3 PE=1 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 9.431e-21
Identity = 50/109 (45.87%), Postives = 72/109 (66.06%), Query Frame = 2
Query:    2 LMHSCIKKLLGQYENPDEEDVEALCILMSTIGEMIDHPKAKEHMYAYFDRMEKLSNNMKLSSRVRLMLKDSIELRKNKWQQRRKVEGPKKIEEVHRDAAQERQAQASRL 328
            +MH C+ KLL   +N DEE +E LC L++TIG+ +D  KAK  M  YF++MEK+    K SSR+R ML+D I+LR   W  RR  +GPK IE++H++A  E Q +  ++
Sbjct:  904 IMHDCVVKLL---KNHDEESLECLCRLLTTIGKDLDFEKAKPRMDQYFNQMEKIVKERKTSSRIRFMLQDVIDLRLCNWVSRRADQGPKTIEQIHKEAKIEEQEEQRKV 1009          
BLAST of DY271251 vs. ExPASy Swiss-Prot
Match: IF4G3_HUMAN (Eukaryotic translation initiation factor 4 gamma 3 OS=Homo sapiens GN=EIF4G3 PE=1 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 9.431e-21
Identity = 50/109 (45.87%), Postives = 72/109 (66.06%), Query Frame = 2
Query:    2 LMHSCIKKLLGQYENPDEEDVEALCILMSTIGEMIDHPKAKEHMYAYFDRMEKLSNNMKLSSRVRLMLKDSIELRKNKWQQRRKVEGPKKIEEVHRDAAQERQAQASRL 328
            +MH C+ KLL   +N DEE +E LC L++TIG+ +D  KAK  M  YF++MEK+    K SSR+R ML+D I+LR   W  RR  +GPK IE++H++A  E Q +  ++
Sbjct:  909 IMHDCVVKLL---KNHDEESLECLCRLLTTIGKDLDFEKAKPRMDQYFNQMEKIVKERKTSSRIRFMLQDVIDLRLCNWVSRRADQGPKTIEQIHKEAKIEEQEEQRKV 1014          
BLAST of DY271251 vs. ExPASy Swiss-Prot
Match: IF4G1_RABIT (Eukaryotic translation initiation factor 4 gamma 1 OS=Oryctolagus cuniculus GN=EIF4G1 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.744e-20
Identity = 52/130 (40.00%), Postives = 79/130 (60.77%), Query Frame = 2
Query:    2 LMHSCIKKLLGQYENPDEEDVEALCILMSTIGEMIDHPKAKEHMYAYFDRMEKLSNNMKLSSRVRLMLKDSIELRKNKWQQRRKVEGPKKIEEVHRDAAQERQAQASRLARGPSMNSSSRRAPMDFGPRG 391
            +MH C+ KLL      DEE +E LC L++TIG+ +D  KAK  M  YF++MEK+    K SSR+R ML+D ++LR++ W  RR  +GPK I+++H++A  E   +  ++ +  +  S  RR     GP G
Sbjct:  720 IMHDCVVKLLRH----DEESLEFLCRLLTTIGKDLDFEKAKPRMDQYFNQMEKIIKEKKTSSRIRFMLQDVLDLRQSNWVPRRGDQGPKTIDQIHKEAEMEEHREHIKVQQLMAKGSDKRRG----GPPG 841          
BLAST of DY271251 vs. ExPASy Swiss-Prot
Match: IF4G_SCHPO (Eukaryotic translation initiation factor 4 gamma OS=Schizosaccharomyces pombe GN=tif471 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 4.381e-18
Identity = 52/137 (37.96%), Postives = 78/137 (56.93%), Query Frame = 2
Query:    2 LMHSCIKKLLGQYENPDEEDVEALCILMSTIGEMID-HPKAKEHMYAYFDRMEKLSNNMKLSSRVRLMLKDSIELRKNKWQQRRKVE-GPKKIEEVHRDAAQERQ-AQASRLARGPSMNSSSRRAPMDFGPRGLSSP 403
            +MH CIK+LLG   +P+EE++E+LC L+ T+G  ID   K    M  Y  RME ++    L SR++ ML D ++ RKN W  + +VE GPK I E+H +A +++  A++ R + G        R     G RG + P
Sbjct: 1167 IMHECIKRLLGNVTDPEEEEIESLCRLLMTVGVNIDATEKGHAAMDVYVLRMETITKIPNLPSRIKFMLMDVMDSRKNGWAVKNEVEKGPKTIAEIHEEAERKKALAESQRPSSGRMHGRDMNRGDSRMGGRGSNPP 1303          
BLAST of DY271251 vs. ExPASy Swiss-Prot
Match: IF4G2_MOUSE (Eukaryotic translation initiation factor 4 gamma 2 OS=Mus musculus GN=Eif4g2 PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 1.319e-14
Identity = 53/155 (34.19%), Postives = 81/155 (52.26%), Query Frame = 2
Query:    2 LMHSCIKKLLGQYENPD----EEDVEALCILMSTIGEMIDHPKAKEHMYAYFDRMEKLSNNMKLSSRVRLMLKDSIELRKNKWQQRRKV--EGPKKIEEVHRDAAQE---------RQAQASRLARGPSMNSSSRRAPMDFGP-RGLSSPTTQMP 418
            ++H CIK LL + +        ED+E LC +M T+G  +DH +AK  M  YF RM  L  + +L +R+R +L+D++ELR++ W  R+     GPK I ++ +DA ++          Q ++     GP M     R  MD  P  GL+    QMP
Sbjct:  227 ILHKCIKTLLEKKKRVQLKDMGEDLECLCQIMRTVGPRLDHERAKSLMDQYFARMCSLMLSKELPARIRFLLQDTVELREHHWVPRKAFLDNGPKTINQIRQDAVKDLGVFIPAPMAQGRSDFFLEGPFM---PPRMKMDRDPLGGLADMFGQMP 378          
BLAST of DY271251 vs. ExPASy Swiss-Prot
Match: IF4G2_RABIT (Eukaryotic translation initiation factor 4 gamma 2 OS=Oryctolagus cuniculus GN=EIF4G2 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.838e-14
Identity = 55/156 (35.26%), Postives = 81/156 (51.92%), Query Frame = 2
Query:    2 LMHSCIKKLLGQYENPD----EEDVEALCILMSTIGEMIDHPKAKEHMYAYFDRMEKLSNNMKLSSRVRLMLKDSIELRKNKWQQRRKV--EGPKKIEEVHRDAAQE-------RQAQASR---LARGPSMNSSSRRAPMDFGP-RGLSSPTTQMP 418
            ++H CIK LL + +        ED+E LC +M T+G  +DH +AK  M  YF RM  L  + +L +R+R +L+D++ELR++ W  R+     GPK I ++ +DA ++         AQ  R      GP M     R  MD  P  GL+    QMP
Sbjct:  227 ILHKCIKTLLEKKKRVQLQDMGEDLECLCQIMRTVGPRLDHERAKSLMDQYFARMCSLMLSKELPARIRFLLQDTVELREHHWVPRKAFLDNGPKTINQIRQDAVKDLGVFIPAPMAQGMRSDFFLEGPFM---PPRMKMDRDPLGGLADMFGQMP 379          
BLAST of DY271251 vs. ExPASy Swiss-Prot
Match: IF4G2_PONAB (Eukaryotic translation initiation factor 4 gamma 2 OS=Pongo abelii GN=EIF4G2 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 3.838e-14
Identity = 55/156 (35.26%), Postives = 81/156 (51.92%), Query Frame = 2
Query:    2 LMHSCIKKLLGQYENPD----EEDVEALCILMSTIGEMIDHPKAKEHMYAYFDRMEKLSNNMKLSSRVRLMLKDSIELRKNKWQQRRKV--EGPKKIEEVHRDAAQE-------RQAQASR---LARGPSMNSSSRRAPMDFGP-RGLSSPTTQMP 418
            ++H CIK LL + +        ED+E LC +M T+G  +DH +AK  M  YF RM  L  + +L +R+R +L+D++ELR++ W  R+     GPK I ++ +DA ++         AQ  R      GP M     R  MD  P  GL+    QMP
Sbjct:  227 ILHKCIKTLLEKKKRVQLKDMGEDLECLCQIMRTVGPRLDHERAKSLMDQYFARMCSLMLSKELPARIRFLLQDTVELREHHWVPRKAFLDNGPKTINQIRQDAVKDLGVFIPAPMAQGMRSDFFLEGPFM---PPRMKMDRDPLGGLADMFGQMP 379          
The following BLAST results are available for this feature:
BLAST of DY271251 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
IF4G1_ARATH2.465e-4560.12Eukaryotic translation initiation factor 4G OS=Ara... [more]
IF4G1_MOUSE1.900e-2140.77Eukaryotic translation initiation factor 4 gamma 1... [more]
IF4G1_HUMAN4.233e-2140.77Eukaryotic translation initiation factor 4 gamma 1... [more]
IF4G3_MOUSE9.431e-2145.87Eukaryotic translation initiation factor 4 gamma 3... [more]
IF4G3_HUMAN9.431e-2145.87Eukaryotic translation initiation factor 4 gamma 3... [more]
IF4G1_RABIT2.744e-2040.00Eukaryotic translation initiation factor 4 gamma 1... [more]
IF4G_SCHPO4.381e-1837.96Eukaryotic translation initiation factor 4 gamma O... [more]
IF4G2_MOUSE1.319e-1434.19Eukaryotic translation initiation factor 4 gamma 2... [more]
IF4G2_RABIT3.838e-1435.26Eukaryotic translation initiation factor 4 gamma 2... [more]
IF4G2_PONAB3.838e-1435.26Eukaryotic translation initiation factor 4 gamma 2... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YF20FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271251 ID=DY271251; Name=DY271251; organism=Citrus clementina; type=EST; length=1014bp
CTTGATGCATTCTTGCATTAAGAAGTTGCTGGGCCAGTATGAGAATCCTG
ACGAGGAGGATGTTGAGGCGTTGTGTATATTAATGAGCACAATAGGAGAG
ATGATCGATCACCCCAAGGCCAAAGAGCATATGTATGCTTATTTTGACAG
AATGGAAAAGTTGTCAAACAACATGAAACTATCTTCTAGGGTTAGGCTTA
TGTTGAAGGATTCAATTGAGTTGAGAAAGAATAAATGGCAGCAGAGGAGG
AAAGTTGAAGGGCCGAAAAAGATCGAGGAAGTGCACAGAGATGCTGCTCA
AGAACGGCAAGCACAAGCTAGTAGGCTCGCCAGAGGTCCAAGCATGAATT
CTTCATCAAGGAGGGCTCCTATGGATTTTGGTCCTAGGGGCTTATCTTCC
CCTACTACCCAAATGCCACGAGAAAGGCATTTGGGGCGCGATAAGAGGAG
GGAGAATGGCCCTGGTTATAGTCAAGGTGGCGATGATGTGGATGATTTTG
GCGAAGACCTCGTGGATTCTTTATTGCCTGACGATGAATCTGAACTCAAG
AATGATAATCATGAGAGGAATGACAAGAAACATCGAAATTCACGTGATAA
GGAAATCAGATCAGATAACAGAGGGAAAAGACGGCTTAGCAAGAGGATGA
GAAACTTAAAATTGCATATTGAATGTCGTGGTGACATAGGAAGACTAAAT
GCTCCCAACTTCCAGAAACTCTTTGAGCAAGTAAAAGCAGTAAACATCGA
CAATGCTGTTACACTCGCTGGTGTGGTCTCTCAAATTTTTGACAAACCTT
TAATGGACGCTAATTTCTGGGAAATGTAGGCAAACTTCTTTTAATTTTCT
TGCCGGAAAATTACCTGATTTCCGTGAAAAAAATGGAAAAAATTTCTTTC
AAGAAACTGCCTTCGAACAAAAGGCCCAGAGGAATTTTAAGAAAGGGAAA
GAAAAAGCAAAAAAAAACCTAACCAAGCCTGAAAAAAAAGGGGGGAAATT
TAACCCAACCCCCG
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