DY271267

Overview
NameDY271267
Unique NameDY271267
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1005
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY271267 vs. ExPASy Swiss-Prot
Match: Y1666_ARATH (Uncharacterized protein At1g76660 OS=Arabidopsis thaliana GN=At1g76660 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.317e-19
Identity = 54/143 (37.76%), Postives = 64/143 (44.76%), Query Frame = 1 
Query:  274 QKRRWGSCWSLYWCFGSHKTSKRISHAVLLPE------PMVXXXXXXXXXXXXXXXXIVLPFIXXXXXXXXFLQSDPSSATQSPAGLLSLNSLSVNAYSPGGPAS-MFAIGPYAHETQLVTPPVFSALHH*TIYGPLHPPSRI 681
            Q++RWG C  ++ CF S K  KRI  A  +PE                         I L  +        F  S   S TQSP   LSL      A SPGGP+S M+A GPYAHETQLV+PPVFS         P  PP  +
Sbjct:    7 QRKRWGGCLGVFSCFKSQKGGKRIVPASRIPEGGNVSASQPNGAHQAGVLNNQAAGGINLSLLAPPSSPASFTNSALPSTTQSPNCYLSLA-----ANSPGGPSSSMYATGPYAHETQLVSPPVFSTFTTEPSTAPFTPPPEL 144

HSP 2 Score: 38.891 bits (89), Expect = 6.317e-19
Identity = 21/38 (55.26%), Postives = 25/38 (65.79%), Query Frame = 3 
Query:  657 PFAPPLPNPVKLTTPSSPEVPSAHLLTSSQERARRNSG 770
            PF PP P   +LT PSSP+VP A  LTSS +   +NSG
Sbjct:  137 PFTPP-PELARLTAPSSPDVPYARFLTSSMD--LKNSG 171
The following BLAST results are available for this feature:
BLAST of DY271267 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y1666_ARATH6.317e-1937.76Uncharacterized protein At1g76660 OS=Arabidopsis t... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAP9YG13FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271267 ID=DY271267; Name=DY271267; organism=Citrus clementina; type=EST; length=1005bp
AATAATAAAACATATAAACTCACCGTTTCGTAATAATTCTTTTGCTCTTC
GTTTTTTCAACCAAATCTTTGAAATACTTGAAAAAGCGGAAAGCTTTCGT
TTGGAGATCCAAACGGAAGCTGTAGATGTTATTACACAACTCGTTTGTGC
CGTCGTTTCATGTTTTGAAAATTTGAAAACAAGATGAGTAGTGTTCACGA
CAGCGTCGAGACCGTTAACGCCGCTGCAACTGCCATAGTTTCAGCTGAGT
CCCGCCTCCGGCCAGCCGCGATTCAGAAAAGAAGATGGGGAAGCTGTTGG
AGCCTCTACTGGTGTTTTGGATCTCATAAAACTAGCAAGCGGATTAGCCA
TGCTGTCCTTCTTCCTGAACCAATGGTAACAGGAGCCGCAGCCCCAGCTG
CAGAAACTCAAGCCCACTCAACAGCCATTGTACTTCCCTTCATTGCTCCT
CCCTCTTCTCCTGCATCGTTCCTCCAATCAGACCCTTCATCTGCCACCCA
ATCACCTGCTGGATTGCTTTCCCTCAATTCCCTTTCTGTCAACGCCTATT
CTCCTGGTGGACCTGCATCCATGTTTGCCATAGGCCCATATGCTCACGAA
ACACAGTTAGTTACACCACCTGTGTTTTCCGCCCTTCACCACTGAACCAT
CTACGGCCCTTTGCACCCCCCCTCCCGAATCCGGTCAAATTGACAACTCC
TTCCTCTCCGGAAGTGCCATCTGCCCACCTGTTGACATCTTCACAGGAAC
GTGCTCGAAGAAACAGCGGGGACTAATCAAGAAGCCCCCATTAATCCCAT
AAGGAAACCGACCCTTATCAACTGGACTCAAGAAACCCAAGGGGGTCAAA
TCCAAATCACCAGGGTTCGGTAGTACTATTACTCAGGGCACTCAGTCTCC
TTTCCCCAAAAAAACATACCCTAATTATTTTATATGGAAGGGGGACAGGG
GCAACCCAAGTACCTGAGGACCTTGAAAAAATTCTAAAAATGGAGCGGGT
GGGAG
back to top