DY271272

Overview
NameDY271272
Unique NameDY271272
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1082
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271272 vs. ExPASy Swiss-Prot
Match: ZN363_MOUSE (RING finger and CHY zinc finger domain-containing protein 1 OS=Mus musculus GN=Rchy1 PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 2.736e-29
Identity = 57/125 (45.60%), Postives = 73/125 (58.40%), Query Frame = 3
Query:   15 LKNSHPCVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMSKVWEKYDREIAATPMPEAYLNKKVWILCNDCGKTSNVQFHVLAQKCPNCKSYNTRLTRG 389
            L+  H C+E     +CP+C E +  +R    VLPCGH +H+ C +EM +   Y CP+C  S  DM++ W + D E+A TPMP  Y N  V ILCNDC   S VQFH+L  KC  C SYNT    G
Sbjct:  130 LRGKHKCIENVSRQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCMHSALDMTRYWRQLDTEVAQTPMPSEYQNVTVDILCNDCNGRSTVQFHILGMKCKLCDSYNTAQAGG 253          
BLAST of DY271272 vs. ExPASy Swiss-Prot
Match: ZN363_HUMAN (RING finger and CHY zinc finger domain-containing protein 1 OS=Homo sapiens GN=RCHY1 PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 2.736e-29
Identity = 57/125 (45.60%), Postives = 74/125 (59.20%), Query Frame = 3
Query:   15 LKNSHPCVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMSKVWEKYDREIAATPMPEAYLNKKVWILCNDCGKTSNVQFHVLAQKCPNCKSYNTRLTRG 389
            L+  H C+E     +CP+C E +  +R    VLPCGH +H+ C +EM +   Y CP+C  S  DM++ W + D E+A TPMP  Y N  V ILCNDC   S VQFH+L  KC  C+SYNT    G
Sbjct:  130 LQGRHKCIENVSRQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCMHSALDMTRYWRQLDDEVAQTPMPSEYQNMTVDILCNDCNGRSTVQFHILGMKCKICESYNTAQAGG 253          
BLAST of DY271272 vs. ExPASy Swiss-Prot
Match: YERG_SCHPO (Uncharacterized RING finger protein C2F3.16 OS=Schizosaccharomyces pombe GN=SPAC2F3.16 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 3.582e-21
Identity = 45/118 (38.14%), Postives = 68/118 (57.63%), Query Frame = 3
Query:   21 NSHPCVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMSKVWEKYDREIAATPMPEAYLNKKVWILCNDCGKTSNVQFHVLAQKCPNCKSYNT 374
            N+H C+E +   +CP+C EY+F +R+ VI L C H +H+ C +E    + Y CP C K++ +++ ++   D EI   PMP  Y      I CNDC    + ++H L  KC +C SYNT
Sbjct:  258 NTHRCIERSTDCNCPICGEYMFNSRERVIFLSCSHPLHQRCHEEYIRTN-YRCPTCYKTIINVNSLFRILDMEIERQPMPYPYNTWISTIRCNDCNSRCDTKYHFLGHKCNSCHSYNT 374          
The following BLAST results are available for this feature:
BLAST of DY271272 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ZN363_MOUSE2.736e-2945.60RING finger and CHY zinc finger domain-containing ... [more]
ZN363_HUMAN2.736e-2945.60RING finger and CHY zinc finger domain-containing ... [more]
YERG_SCHPO3.582e-2138.14Uncharacterized RING finger protein C2F3.16 OS=Sch... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP9YG20FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271272 ID=DY271272; Name=DY271272; organism=Citrus clementina; type=EST; length=1082bp
GCTACTCAATTTTTTTGAAGAACAGCCACCCATGTGTAGAAGGTGCAATG
CATCATGACTGCCCTGTCTGCTGTGAGTATTTATTCGAGACAAGACAGGA
TGTAATTGTCTTGCCGTGTGGGCATACCATTCACAAAAATTGCTTGAAGG
AGATGCGGGAACATCATCAATATGCCTGTCCTATCTGCTCCAAGTCAGTC
TGTGACATGTCCAAAGTATGGGAGAAATATGACAGGGAGATAGCGGCTAC
TCCAATGCCAGAAGCTTACCTAAATAAAAAGGTTTGGATCCTTTGCAATG
ACTGTGGTAAGACCTCTAATGTCCAGTTCCATGTGCTGGCTCAGAAGTGC
CCAAACTGCAAGTCCTACAACACTCGCTTGACCAGGGGCTGAGCAAGTGG
CAGTATTGTTAGCAATGATGGTGATGGTGATGGGAACTCTCTGTTTGATG
TGGATGGGTTCGGGTCTTAATTAATCTTTTCAACCATCTCAGCCACAGTC
GTTACTCATTATGGGGTAGTGGCTGCATCTAACACTTGCTCTGTGGGGAG
CAGTTAGTCTTCCTCGTGGTGTTTCTATTCTAGCTCGGGGTGGTTTGAAT
CGGCCCTGGTGTTGGTTTTCGGCCTCTTGTTTTTCATTTCATTTGTTCTT
TGGTGGATTTTTCCCCCAGGGCACCGAAGGTAATTATCCATACCCACAAC
CTCATACCGGTGGCTGGGAAGGAACTTCTTACCCCTTTTGCAAAAAAATA
AAGGTTTTTCTTGTTTAAAAAAAAAAAAAAAAAAAACCCACAATTTTCTT
TGAAAAATTTTGCTATTTAAAAAAGGATTCTTTTTATAATTTTTTTGGCA
AAGAAACAGGGCACAAAAACAGCCAAAAAAAAAATCTTATATACCCACTC
CGCCCAAAAACCCCCAAACTAGAACCACTATTAAAAGGGGCAAAATGCTA
TTTCCTGGGGAGCTCGCGGCGCGCTGGTCCCAAACTGCGATGAGTAACAA
TTACCAAAAAAAAAAAAATATATCTTTGGTCTGTTAAAACAAACTCTCTA
TCATCAACATAGAAAAACTCACAATCTTTATA
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