DY271278

Overview
NameDY271278
Unique NameDY271278
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1013
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271278 vs. ExPASy Swiss-Prot
Match: TTL12_HUMAN (Tubulin--tyrosine ligase-like protein 12 OS=Homo sapiens GN=TTLL12 PE=1 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 1.691e-29
Identity = 65/155 (41.94%), Postives = 90/155 (58.06%), Query Frame = 2
Query:  128 RVYTDIPYVEEFLTRTEFVITTEPKDADIIWTSLQVDEDMKKATGITDQQYVNQFPFESCLVMKHHLAETVQKAHG--SPEWLQPTYNLETHLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSAVIRLMETGPKICQKYIEFPALF 586
            +VYTD+  V   LT   F +T    DADI++      +D +K +       +NQFP E+ L +K  LA   ++A G   P WL  T+NL T LPQ +  +  R+R G +N WI KPWN+AR++DT VT  L ++IR  E+ PK+  KYIE P LF
Sbjct:  306 KVYTDVQQVASSLTHPRFTLTQSEADADILFNFSHF-KDYRKLSQERPGVLLNQFPCENLLTVKDCLASIARRAGGPEGPPWLPRTFNLRTELPQFVSYFQQRERWGEDNHWICKPWNLARSLDTHVTKSLHSIIRHRESTPKVVSKYIESPVLF 459          

HSP 2 Score: 30.4166 bits (67), Expect = 1.691e-29
Identity = 12/23 (52.17%), Postives = 19/23 (82.61%), Query Frame = 3
Query:  615 ILLGRSMDPLKIFLSDVFWVRLA 683
            I+L RS+ PL++F+ DVFW+R +
Sbjct:  474 IVLLRSVRPLRLFVYDVFWLRFS 496          
BLAST of DY271278 vs. ExPASy Swiss-Prot
Match: TTL12_CAEEL (Tubulin--tyrosine ligase-like protein 12 OS=Caenorhabditis elegans GN=ttll-12 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.953e-27
Identity = 61/153 (39.87%), Postives = 92/153 (60.13%), Query Frame = 2
Query:  128 RVYTDIPYVEEFLTRTEFVITTEPKDADIIWTSLQVDEDMKKATGITDQQYVNQFPFESCLVMKHHLAETVQKAHGSPEWLQPTYNLETHLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSAVIRLMETGPKICQKYIEFPALF 586
            +VY D   + E L   +     + K AD+IW  ++   D K+ +       +NQFPFESC+ +K  LA    +     +W Q TYNL T LP+ +  +  R+ +G +N+WI+KPWN+AR +D +VT+DL+ +IR++ETGPKI  +YI  P LF
Sbjct:  330 KVYADDTQLTEHLKNHKVEYVDDIKKADVIWM-IKHFHDYKQLSEENPCGMINQFPFESCITVKDLLAACAMRDPAKNDWYQLTYNLNTQLPEFVARFQNRELNGQHNVWIVKPWNLARGMDMTVTEDLNQIIRMIETGPKIVCEYIPRPLLF 481          
BLAST of DY271278 vs. ExPASy Swiss-Prot
Match: TTL12_MOUSE (Tubulin--tyrosine ligase-like protein 12 OS=Mus musculus GN=Ttll12 PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.962e-26
Identity = 67/162 (41.36%), Postives = 92/162 (56.79%), Query Frame = 2
Query:  107 RSDGCASRVYTDIPYVEEFLTRTEFVITTEPKDADIIWTSLQVDEDMKKATGITDQQYVNQFPFESCLVMKHHLAETVQKAHG--SPEWLQPTYNLETHLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSAVIRLMETGPKICQKYIEFPALF 586
            R  G   RV+ D+  V   LT   F  T    DADI +      +D  K +  + Q  +NQFP E+ L +K  LA   ++A G   P WL  T+NL T LPQ +  +  R+R G +N WI KPWN+AR++DT VT++L ++IR  E+ PK+  KYIE P LF
Sbjct:  294 RPQGHVFRVHCDVQQVLGHLTHPRFTFTDSEADADIFFHFSHF-KDYMKLSQESPQVLLNQFPCENLLTVKDCLASIARRAGGPEGPPWLPRTFNLRTELPQFVSYFQHRERRGEDNHWICKPWNLARSLDTHVTNNLHSIIRHRESTPKVVSKYIESPVLF 454          
BLAST of DY271278 vs. ExPASy Swiss-Prot
Match: TTL12_CAEBR (Tubulin--tyrosine ligase-like protein 12 OS=Caenorhabditis briggsae GN=ttll-12 PE=4 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 4.371e-26
Identity = 58/153 (37.91%), Postives = 90/153 (58.82%), Query Frame = 2
Query:  128 RVYTDIPYVEEFLTRTEFVITTEPKDADIIWTSLQVDEDMKKATGITDQQYVNQFPFESCLVMKHHLAETVQKAHGSPEWLQPTYNLETHLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSAVIRLMETGPKICQKYIEFPALF 586
            +++ D   + E L   +     + K AD+IW  ++   D            +NQFPFESC+ +K  LA    +     +W Q TYNL T LP+ +  +  R+++G +N+WI+KPWN+AR ++ +VTDDL+ +IR++ETGPKI  +YI  P LF
Sbjct:  338 QIFADDTQLTEHLKSRQIEYVDDWKAADVIWM-IKHFHDYSNLAQENPCAQINQFPFESCITVKDLLAACAMRDPSKNDWYQLTYNLNTQLPEFVARFQNRQKNGEHNVWIVKPWNLARGMEMAVTDDLNQIIRMVETGPKIVCEYIARPLLF 489          
The following BLAST results are available for this feature:
BLAST of DY271278 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
TTL12_HUMAN1.691e-2941.94Tubulin--tyrosine ligase-like protein 12 OS=Homo s... [more]
TTL12_CAEEL3.953e-2739.87Tubulin--tyrosine ligase-like protein 12 OS=Caenor... [more]
TTL12_MOUSE1.962e-2641.36Tubulin--tyrosine ligase-like protein 12 OS=Mus mu... [more]
TTL12_CAEBR4.371e-2637.91Tubulin--tyrosine ligase-like protein 12 OS=Caenor... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP9YH03FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271278 ID=DY271278; Name=DY271278; organism=Citrus clementina; type=EST; length=1013bp
TCCACAGAGTTATTTTATCAATGAGTATGAGAAACACTGCCAGAAATTGC
AGTTCAAAAGTTTGAGCTACACACCTACCAAGTCTTCTAACACTGAAAGT
CTGCATCGTAGTGACGGATGTGCTTCACGTGTTTACACTGACATACCTTA
TGTGGAAGAATTTTTGACTCGTACTGAATTTGTAATCACAACTGAGCCGA
AGGATGCTGATATTATATGGACAAGTTTGCAGGTGGATGAGGACATGAAA
AAGGCTACTGGAATAACAGATCAGCAATATGTAAACCAATTTCCTTTTGA
GTCTTGCCTTGTAATGAAACATCATTTGGCAGAGACTGTTCAGAAGGCAC
ATGGTTCTCCTGAATGGTTGCAGCCTACTTACAATCTTGAAACGCATCTA
CCTCAACTTATTGGTGACTATTACGTACGGAAAAGAGATGGGCTTAATAA
TTTATGGATATTAAAACCTTGGAACATGGCAAGGACTATTGATACCTCTG
TGACTGATGATTTATCTGCTGTTATCCGTCTCATGGAAACTGGTCCGAAA
ATATGCCAGAAATATATTGAGTTCCCTGCTTTGTTCCAAGGAAGGAACTC
AATATATTTCTGGCATATTACTGGGTCGCAGTATGGACCCTTTAAAAATA
TTCCTTTCAGATGTTTTCTGGGTTAGACTGGCAAAACCATCCATATTCTT
TAACCAACCCACTTTCTTTTGACTCCCACAACCCCCTTTACAGTTTTGAA
TTATGGGCGGAAATTTCATCCCCTGACACACCCCGCAATTTCGTGAGGGA
GTTGGAATTGGAAACCCCACATTAAAGGGTTAAAAATCTCACAACAAACC
AAAAAAACAAATCCGACCGGCCTTAAAGGGCGGCCGTGGGTTGCAATCCC
GGAAGAAGCACATTTCCAAAACCCAGGCCCCCAGCCTCGGGGCAAATAAA
CAGCTAGTAACACTCCCTTCACCCCCCATATCACGGGGGCGCGTCACCTG
CTGGCCCACATGG
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