DY271284

Overview
NameDY271284
Unique NameDY271284
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1077
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271284 vs. ExPASy Swiss-Prot
Match: GLRX_VERFO (Glutaredoxin OS=Vernicia fordii PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 7.877e-37
Identity = 75/102 (73.53%), Postives = 84/102 (82.35%), Query Frame = 2
Query:   74 MALPNAQETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCYSTTALHREWKPGPLLTATGAV 379
            MA+  AQE VSSNSVVVFSKTFCP+C SVK+L  QLG  FK IEL+ ESDGSD+Q+ALAEWTGQ+TVPNVFIGGKHIGGC  TT +H+E K  PLLT  GAV
Sbjct:    1 MAMIKAQELVSSNSVVVFSKTFCPYCTSVKQLLNQLGAQFKVIELDSESDGSDLQNALAEWTGQRTVPNVFIGGKHIGGCDKTTGMHQEGKLIPLLTEAGAV 102          
BLAST of DY271284 vs. ExPASy Swiss-Prot
Match: GLRX_SOLLC (Glutaredoxin OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 6.668e-36
Identity = 73/106 (68.87%), Postives = 86/106 (81.13%), Query Frame = 2
Query:   74 MALPNAQETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCYSTTALHREWKPGPLLTATGAVSNYS 391
            M+L  A+E VS N V VFSKT+CPFCVSVK+L  +LG TFKA+EL+ E DGS+IQ+ALAEWTGQ+TVPNVFIG KHIGGC +TTALHRE K  PLLT  GA++  S
Sbjct:    1 MSLAKAKEIVSGNPVAVFSKTYCPFCVSVKDLLSKLGATFKAVELDSEKDGSEIQAALAEWTGQRTVPNVFIGRKHIGGCDATTALHREGKLLPLLTEAGAIAKTS 106          
BLAST of DY271284 vs. ExPASy Swiss-Prot
Match: GRXC6_ORYSJ (Glutaredoxin-C6 OS=Oryza sativa subsp. japonica GN=GRXC6 PE=1 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 5.645e-35
Identity = 72/104 (69.23%), Postives = 87/104 (83.65%), Query Frame = 2
Query:   74 MALPNAQETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCYSTTALHREWKPGPLLTATGAVSN 385
            MAL  A+ETV+S  VVV+SK++CPFCV VK+LF+QLG TFKAIEL+ ESDGS++QSALAEWTGQ+TVPNVFI GKHIGGC  T AL+ E K  PLLT  GA+++
Sbjct:    1 MALAKAKETVASAPVVVYSKSYCPFCVRVKKLFEQLGATFKAIELDGESDGSELQSALAEWTGQRTVPNVFINGKHIGGCDDTLALNNEGKLVPLLTEAGAIAS 104          
BLAST of DY271284 vs. ExPASy Swiss-Prot
Match: GRXC2_ARATH (Glutaredoxin-C2 OS=Arabidopsis thaliana GN=GRXC2 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.258e-34
Identity = 70/103 (67.96%), Postives = 84/103 (81.55%), Query Frame = 2
Query:   74 MALPNAQETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCYSTTALHREWKPGPLLTATGAVS 382
            MA+  A+E V+S SVVVFSKT+CP+CV VKEL QQLG  FKA+EL+ ESDGS IQS LAEWTGQ+TVPNVFIGG HIGGC +T+ LH++ K  PLLT  GA++
Sbjct:    1 MAMQKAKEIVNSESVVVFSKTYCPYCVRVKELLQQLGAKFKAVELDTESDGSQIQSGLAEWTGQRTVPNVFIGGNHIGGCDATSNLHKDGKLVPLLTEAGAIA 103          
BLAST of DY271284 vs. ExPASy Swiss-Prot
Match: GLRX_RICCO (Glutaredoxin OS=Ricinus communis PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 4.779e-34
Identity = 69/102 (67.65%), Postives = 83/102 (81.37%), Query Frame = 2
Query:   74 MALPNAQETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCYSTTALHREWKPGPLLTATGAV 379
            MA+   +E VSSN+VVVFSKT+CP+C SVK+L  QLG  +K +EL+ ESDGS+IQ+ALAEWTGQ+TVPNVFIGGKHIGGC STTA H + +  PLLT  GAV
Sbjct:    1 MAMTKTKELVSSNAVVVFSKTYCPYCTSVKKLLDQLGAKYKVVELDTESDGSEIQTALAEWTGQRTVPNVFIGGKHIGGCDSTTAKHSQGQLVPLLTEAGAV 102          
BLAST of DY271284 vs. ExPASy Swiss-Prot
Match: GRXC4_ORYSJ (Glutaredoxin-C4, chloroplastic OS=Oryza sativa subsp. japonica GN=GRXC4 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 9.326e-30
Identity = 63/115 (54.78%), Postives = 84/115 (73.04%), Query Frame = 2
Query:   47 RIKDKEDTEMALPNAQETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCYSTTALHREWKPGPLLTATGAVSNYS 391
            ++++     MAL  A+E V+S+ VVVFSKT+CPFC  VK L  +L  ++KA+EL+ ESDGS++QSALA+WTGQ+TVP VFI GKHIGGC  T A+H+     PLLT  GA++  S
Sbjct:   18 QLEEPSKPVMALDKAKEIVASSPVVVFSKTYCPFCARVKRLLAELAASYKAVELDVESDGSELQSALADWTGQRTVPCVFIKGKHIGGCDDTMAMHKGGNLVPLLTEAGAIATPS 132          
BLAST of DY271284 vs. ExPASy Swiss-Prot
Match: GRXC1_ARATH (Glutaredoxin-C1 OS=Arabidopsis thaliana GN=GRXC1 PE=2 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 6.684e-28
Identity = 61/111 (54.95%), Postives = 80/111 (72.07%), Query Frame = 2
Query:   59 KEDTEMALPNAQETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCYSTTALHREWKPGPLLTATGAVSNYS 391
            KE+ E+ +  A+E VS+  VVVFSKT+C +C  VK+L  QLG TFK +EL++ SDG +IQSAL+EWTGQ TVPNVFI G HIGGC      +++ K  PLLT  GA+++ S
Sbjct:   12 KEEMEVVVNKAKEIVSAYPVVVFSKTYCGYCQRVKQLLTQLGATFKVLELDEMSDGGEIQSALSEWTGQTTVPNVFIKGNHIGGCDRVMETNKQGKLVPLLTEAGAIADNS 122          
BLAST of DY271284 vs. ExPASy Swiss-Prot
Match: GLRX_DICDI (Glutaredoxin OS=Dictyostelium discoideum GN=grxA PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 4.342e-19
Identity = 45/91 (49.45%), Postives = 65/91 (71.43%), Query Frame = 2
Query:  101 VSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCYSTTALHREWKPGPLLTATG 373
            + ++ +++FSKT CP+C+SVK+LF++L V    +EL+ ESDGS++QSA  + +G +TVP VFI  K IGGC +TT LH + K  PLL   G
Sbjct:    8 IKAHKLIIFSKTTCPYCISVKDLFKKLKVVPFVVELDLESDGSELQSAAGQISGVRTVPQVFINEKFIGGCDATTKLHSQGKLIPLLQEAG 98          
BLAST of DY271284 vs. ExPASy Swiss-Prot
Match: GLRX2_MOUSE (Glutaredoxin-2, mitochondrial OS=Mus musculus GN=Glrx2 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.397e-17
Identity = 42/100 (42.00%), Postives = 63/100 (63.00%), Query Frame = 2
Query:   62 EDTEMALPNAQETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCYSTTALHREWKPGPLL 361
            + T   +   QET+S+N VV+FSKT C +C   K++F  + V +KA+EL+    G+  Q AL + TG++TVP +F+ G+ IGG   T  LH+E K  PL+
Sbjct:   44 KSTTTPVNQIQETISNNCVVIFSKTSCSYCSMAKKIFHDMNVNYKAVELDMLEYGNQFQDALHKMTGERTVPRIFVNGRFIGGAADTHRLHKEGKLLPLV 143          
BLAST of DY271284 vs. ExPASy Swiss-Prot
Match: GLRX2_BOVIN (Glutaredoxin-2, mitochondrial OS=Bos taurus GN=GLRX2 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 2.383e-17
Identity = 42/90 (46.67%), Postives = 57/90 (63.33%), Query Frame = 2
Query:   92 QETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCYSTTALHREWKPGPLL 361
            QET+S+N VV+FSKT C +C   K LF  + V +K +EL+    GS  Q AL + TG++TVP +F+ G  IGG   T  LH+E K  PL+
Sbjct:   55 QETISNNCVVIFSKTSCSYCTMAKNLFHDMNVNYKVVELDMLEYGSQFQDALHKMTGERTVPRIFVNGTFIGGATDTHRLHKEGKLLPLV 144          
The following BLAST results are available for this feature:
BLAST of DY271284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
GLRX_VERFO7.877e-3773.53Glutaredoxin OS=Vernicia fordii PE=3 SV=1[more]
GLRX_SOLLC6.668e-3668.87Glutaredoxin OS=Solanum lycopersicum PE=3 SV=1[more]
GRXC6_ORYSJ5.645e-3569.23Glutaredoxin-C6 OS=Oryza sativa subsp. japonica GN... [more]
GRXC2_ARATH1.258e-3467.96Glutaredoxin-C2 OS=Arabidopsis thaliana GN=GRXC2 P... [more]
GLRX_RICCO4.779e-3467.65Glutaredoxin OS=Ricinus communis PE=3 SV=1[more]
GRXC4_ORYSJ9.326e-3054.78Glutaredoxin-C4, chloroplastic OS=Oryza sativa sub... [more]
GRXC1_ARATH6.684e-2854.95Glutaredoxin-C1 OS=Arabidopsis thaliana GN=GRXC1 P... [more]
GLRX_DICDI4.342e-1949.45Glutaredoxin OS=Dictyostelium discoideum GN=grxA P... [more]
GLRX2_MOUSE1.397e-1742.00Glutaredoxin-2, mitochondrial OS=Mus musculus GN=G... [more]
GLRX2_BOVIN2.383e-1746.67Glutaredoxin-2, mitochondrial OS=Bos taurus GN=GLR... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YH10FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271284 ID=DY271284; Name=DY271284; organism=Citrus clementina; type=EST; length=1077bp
GTAAAGCCACCCTTTATGGGAAGCTTATTTAGGGTTTGTGAGATTTCGAA
TCAAAGACAAAGAAGACACAGAAATGGCTTTGCCCAATGCCCAGGAAACC
GTTTCCTCCAATTCCGTCGTCGTTTTCAGCAAAACGTTTTGTCCGTTCTG
CGTGAGTGTCAAAGAGCTGTTTCAGCAACTCGGAGTCACTTTCAAGGCCA
TTGAACTGAACAAAGAAAGTGATGGAAGTGACATTCAATCAGCTCTAGCT
GAGTGGACTGGACAGAAAACTGTTCCAAATGTCTTCATCGGAGGGAAACA
CATTGGTGGCTGCTATTCCACTACTGCACTGCACAGGGAATGGAAGCCCG
GTCCTCTGCTCACTGCAACTGGAGCTGTTAGCAACTACAGTTGCTAGATG
GAAGGATCATGTCTCCCCCGCTTATTCCAATACTAGTTCTTCGAATGGGT
TCCGTACTGACGTCTCCCGCACGACATATCCTTGCAAACAAGTCAGTCCG
AACGAAATAACAACGCAATTACATAATATGCTTACTGATAATTTCACTTA
AAACAAAAATACCCACCACAAAACACACCCGCCAACCCCAAACCCACATA
CTTCACCAACCCTCCGACAAATCTCCCCCACTAACAATCCCATACCTAGA
ATATTAAAACAACGTAAAAACCAGACAACTACAATAGTACCCAACCTCTC
AATTAGCCCTTCAGTTTATATTCACCCTTACTACCCTTCATTTATAATGT
GTCTTAATTACATTATTGATTCCTTATGGTTCTTTCTGGTGGTCCGCATA
AGCGTACATCATAACATCTCTTACAATGTATCCCAATCACCACATTAGCA
TATCTTTTCAATCCATTCGCTCCTCCTCCGCTCTGGACCTTCAGGGTCCA
GCTTTCTGGGCTTTATACTTCTCTTCACCCCCGCACCATACATCCACAAC
ACTATAATCACACACATCAATCAAACTCTCCTGCTCTATAAGATACTTAT
ACTCCCTAGTCTACCAACGACTTCAAACCACAAAGAACGCATCAACCTAA
CACCAACACCCAGACACACACTCACAC
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