DY271287

Overview
NameDY271287
Unique NameDY271287
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1008
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271287 vs. ExPASy Swiss-Prot
Match: ELI_PEA (Early light-induced protein, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 1.147e-50
Identity = 111/173 (64.16%), Postives = 129/173 (74.57%), Query Frame = 1
Query:  145 RSGANQLSSVK--YLPSLRRNVNLSVRCTAXXXXXXXXXXXX-PTIPKAE---PQPP--KKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALAFTEFVKG 639
            RS  NQ +++   Y+P+LRRNV+L VR  A             PT P A    PQP   + P+MST FS++ AFSGPAPERINGRLAMIGFVAA+GVEI+KGQ +  QLS GGVAWFLGTSVLL++ASL+P F+GVSVESKS   M+SDAE WNGR AMLGLVALAFTEFVKG
Sbjct:   20 RSRVNQFTNIPSVYIPTLRRNVSLKVRSMAEGEPKEQSKVAVDPTTPTASTPTPQPAYTRPPKMSTKFSDLMAFSGPAPERINGRLAMIGFVAAMGVEIAKGQGLSEQLSGGGVAWFLGTSVLLSLASLIPFFQGVSVESKSKSIMSSDAEFWNGRIAMLGLVALAFTEFVKG 192          
BLAST of DY271287 vs. ExPASy Swiss-Prot
Match: DS22_CRAPL (Desiccation stress protein DSP-22, chloroplastic OS=Craterostigma plantagineum GN=DSP-22 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.608e-36
Identity = 90/195 (46.15%), Postives = 124/195 (63.59%), Query Frame = 1
Query:   76 MAASLATQSMLASPVAARVTGIRRSGANQLSSVKY---LPSLRRNVNLSVRCTAXXXXXXXXXXXXP--TIPKAEPQPPKKPRMSTGFS-EVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALAFTEFVKGG 642
            MA+S    ++ A     + T I R G N L   K    LP +RRN   +VR                  T        P +  ++T  + ++F+F G APERINGR AMIGFVAA+GVE++ G+DVF+Q+ +GGV WFL TS +L +A+L+P+++G+S E+K++GF  SDAE+WNGRFAM+GLVALAFTE+VKGG
Sbjct:    1 MASSTCYATIPAMSCRGQST-ITRFGPNNLFLGKQSYELPLMRRNAKFTVRSMREDNEKEEQQQQKQQQTHDGGPDLTPNRTEVTTKRTVDLFSFDGLAPERINGRSAMIGFVAAVGVELATGRDVFSQVFNGGVMWFLLTSAVLVLATLIPIYRGLSPEAKNNGFWNSDAEIWNGRFAMIGLVALAFTEYVKGG 194          
BLAST of DY271287 vs. ExPASy Swiss-Prot
Match: ELI5_HORVU (High molecular mass early light-inducible protein HV58, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.840e-32
Identity = 75/131 (57.25%), Postives = 93/131 (70.99%), Query Frame = 1
Query:  265 PTIPKAEPQPPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLS--DGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALAFTEFVKGGTHV 651
            PT   A P+P  K + +    +  AFSGPAPERINGRLAM+GFVAAL VE ++G  +  Q+     G+AWFL T+ + +VASL+PL +G SVESKS G  ++DAELWNGRFAMLGLVALA TEF+ G   V
Sbjct:  100 PTTIPAAPKPVTK-KANPSVWDALAFSGPAPERINGRLAMVGFVAALSVEAARGGGLLDQVGMWSSGLAWFLATAGVFSVASLLPLLQGQSVESKSSGIWSADAELWNGRFAMLGLVALAATEFITGAPFV 229          
BLAST of DY271287 vs. ExPASy Swiss-Prot
Match: ELI9_HORVU (Low molecular mass early light-inducible protein HV90, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 5.353e-32
Identity = 86/189 (45.50%), Postives = 111/189 (58.73%), Query Frame = 1
Query:   88 LATQSMLASPVAARVTGIRRSGANQLSSVKYLPSLRRNVNLSVRCTAXXXXXXXXXXXXPTIPKAEPQPPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDG-GVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALAFTEFVKGGTHV 651
            +AT   ++S   A V  + RS A+   + + LP+L R   L VR               P+ P     PP KP+ ST   +  AFSGPAPERINGRLAM+GFV AL VE  +G  + +QL  G G AWF  T  +L++ASLVPL +G S E ++   M ++AELWNGRFAMLGLVALA TE + G   +
Sbjct:    1 MATMMSMSSFAGAAV--VPRSSASSFGA-RSLPALGRRA-LVVRAQTEG----------PSAP-----PPNKPKASTSIWDEMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAVLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMLGLVALAATEIITGAPFI 170          
BLAST of DY271287 vs. ExPASy Swiss-Prot
Match: ELI6_HORVU (Low molecular mass early light-inducible protein HV60, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 9.131e-32
Identity = 68/117 (58.12%), Postives = 84/117 (71.79%), Query Frame = 1
Query:  292 PPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDG-GVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALAFTEFVKG 639
            PP KP+ ST   +  AFSGPAPERINGRLAM+GFV AL VE  +G  + +QL  G G AWF  T  +L++ASLVPL +G S E ++   M ++AELWNGRFAM+GLVALA TE + G
Sbjct:   45 PPNKPKASTSIWDAMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAMLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMIGLVALAATEIITG 161          
BLAST of DY271287 vs. ExPASy Swiss-Prot
Match: CBR_DUNBA (Carotene biosynthesis-related protein CBR, chloroplastic OS=Dunaliella bardawil GN=CBR PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 3.369e-18
Identity = 61/128 (47.66%), Postives = 73/128 (57.03%), Query Frame = 1
Query:  268 TIPKAEPQPPKKPRMSTG--FSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSD--GFMTSDAELWNGRFAMLGLVALAFTEFVKG 639
            T P + P PP  P        +EV  FSG APE INGRLAM+GFVAALG E+S G+ V  QL D      L T VL + ASL+P F       K D  G  T DAE+ NGRFAM+G  A+   E ++G
Sbjct:   47 TPPPSSPSPPPPPPTPAAPTVTEVMGFSG-APEIINGRLAMLGFVAALGAELSTGESVLTQLGDQPTLIAL-TFVLFSAASLIPAF----ARRKGDAMGPFTPDAEMTNGRFAMIGFAAMLVYEGIQG 168          
The following BLAST results are available for this feature:
BLAST of DY271287 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
ELI_PEA1.147e-5064.16Early light-induced protein, chloroplastic OS=Pisu... [more]
DS22_CRAPL1.608e-3646.15Desiccation stress protein DSP-22, chloroplastic O... [more]
ELI5_HORVU1.840e-3257.25High molecular mass early light-inducible protein ... [more]
ELI9_HORVU5.353e-3245.50Low molecular mass early light-inducible protein H... [more]
ELI6_HORVU9.131e-3258.12Low molecular mass early light-inducible protein H... [more]
CBR_DUNBA3.369e-1847.66Carotene biosynthesis-related protein CBR, chlorop... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP9YH14FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271287 ID=DY271287; Name=DY271287; organism=Citrus clementina; type=EST; length=1008bp
ACAAGGAACCCGTCGACCTGAAGCACCCAATTCCCGAATTATACTTTGTT
CTGTTTTCTACTTCATAAATTAAAAATGGCCGCATCACTTGCTACTCAAT
CTATGCTGGCAAGTCCTGTAGCAGCTCGTGTGACTGGTATCAGGAGATCC
GGGGCAAACCAACTTTCCTCCGTCAAGTACTTGCCTAGTCTGCGTAGAAA
TGTCAACTTATCCGTGCGCTGCACGGCAGAGGATGAGCAGCAGCAGCAGC
AGAAAGATGATCAACCAACCATACCGAAAGCTGAGCCTCAGCCACCAAAG
AAGCCGCGGATGAGCACGGGGTTCTCTGAGGTGTTCGCGTTCAGCGGGCC
GGCACCGGAGAGGATAAACGGGAGGCTTGCGATGATTGGGTTCGTGGCTG
CATTGGGGGTGGAGATATCCAAGGGTCAGGATGTGTTTGCCCAGTTATCA
GACGGTGGGGTTGCCTGGTTCTTGGGGACCAGTGTTTTGCTCACGGTTGC
GTCCCTGGTTCCTTTGTTTAAAGGTGTCAGCGTGGAGTCTAAATCGGATG
GGTTCATGACTTCAGATGCTGAGTTGTGGAATGGGAGGTTTGCTATGCTG
GGCCTAGTTGCTTTGGCTTTCACCGAGTTTGTTAAGGGTGGCACCCATGT
TTAACCTAAATTTTTGTTAAAACCAGTAGAATCTGTATCTTATTAAAACT
AATGAAAAGTAAGGACATCCCCCTGAAAATCAAATCACAATCTCGCCTGC
CCATTCTCTAATTTCACACCCAAAAAAAAAAAAAAAAAAAAACAAAACCC
AAACCTTCTATCACATAACGAGGACTTGAATACAACGCGATGCCTCATCC
AGTTGTCCCGCCCCCGACCAGGCTGCGCAACAGTCAGATTAAAAACTCTA
AAGTTGCCCATCTACAAAGTCAACCCCATAATTAGAGTTCTAAATCACAA
GGCCAAATATATATGACTCATCTAGGACCTCTAAGACCAACTTTTAAAAA
AATAAGAA
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