DY271288

Overview
NameDY271288
Unique NameDY271288
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length986
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271288 vs. ExPASy Swiss-Prot
Match: NIFU2_ARATH (NifU-like protein 2, chloroplastic OS=Arabidopsis thaliana GN=NIFU2 PE=1 SV=1)

HSP 1 Score: 280.796 bits (717), Expect = 8.404e-75
Identity = 143/180 (79.44%), Postives = 159/180 (88.33%), Query Frame = 3
Query:   78 NPVRHSSCRLLLIRKRGAARRNVIKAVATPDSAIELPLTAENIESVLDEIRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVESVADEETGLELNEENIEKVLEEIRPYLVGAAGGSLELVAIDEPIVKVRITGPAAGVMTVRVAVTQKLREKIP 617
            NP+R    R L  R+    R  V+KAVATPD  +E+PLT EN+ESVLDEIRPYL+SDGGNVALHEIDGN+VR+KLQGACGSCPSS MTMKMGIERRLMEKIPEIVAVE++ DEETGLELNEENIEKVLEEIRPYL+G A GSL+LV I++PIVK+RITGPAAGVMTVRVAVTQKLREKIP
Sbjct:   49 NPLRRGLSRFLSSRQL-FRRSKVVKAVATPDPILEVPLTEENVESVLDEIRPYLMSDGGNVALHEIDGNIVRVKLQGACGSCPSSTMTMKMGIERRLMEKIPEIVAVEALPDEETGLELNEENIEKVLEEIRPYLIGTADGSLDLVEIEDPIVKIRITGPAAGVMTVRVAVTQKLREKIP 227          
BLAST of DY271288 vs. ExPASy Swiss-Prot
Match: NIFU1_ORYSJ (NifU-like protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=NIFU1 PE=1 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 1.701e-59
Identity = 123/201 (61.19%), Postives = 151/201 (75.12%), Query Frame = 3
Query:   24 SKSTKSFFGERVSLTRWRNPVRHSSCRLLLIRKRGAARRN-VIKAVA--TPDSAIELPLTAENIESVLDEIRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVESVADEETGLELNEENIEKVLEEIRPYLVGAAGGSLELVAIDEPIVKVRITGPAAGVMTVRVAVTQKLREKIP 617
            S +T S    +V+   W +    SS    L+      R   V+ A+A   P +A++LPLTA N+ESVLD++RPYL +DGG+VALHEI GNVVRLKLQGACGSCPSS++T+K GIERRLMEKIP++ AVE V D+ETGLELNEEN+EKVL EIRPYL G  GG L+ + I  PIVKVR+TGPAA V TVR+AV++KLREKIP
Sbjct:   17 STTTSSSASFKVAAYAWSSCRSSSSPATRLVAAPNHQRPPLVVGAIAGLDPVTAVQLPLTAGNVESVLDQVRPYLTADGGDVALHEIAGNVVRLKLQGACGSCPSSLITIKRGIERRLMEKIPDVAAVEPVTDKETGLELNEENVEKVLNEIRPYLAGTGGGGLQFLMIKGPIVKVRLTGPAAVVRTVRIAVSKKLREKIP 217          
BLAST of DY271288 vs. ExPASy Swiss-Prot
Match: NIFU3_ARATH (NifU-like protein 3, chloroplastic OS=Arabidopsis thaliana GN=NIFU3 PE=2 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.648e-54
Identity = 109/146 (74.66%), Postives = 124/146 (84.93%), Query Frame = 3
Query:  183 LPLTAENIESVLDEIRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVESVADEET-GLELNEENIEKVLEEIRPYLVGAAGGSLELVAIDEPIVKVRITGPAAGVMTVRVAVTQKLREKIP 617
            +PLT EN+E VLDE+RP L++DGGNVALHEIDG VV LKLQGACGSCPSS MT+KMGIE RL +KIPEI++VE   + ET GLELN+ENIEKVL E+RPYL G  GG LELV ID  +VKVR+TGPAAGVMTVRVA+TQKLRE IP
Sbjct:   82 MPLTEENVERVLDEVRPSLMADGGNVALHEIDGLVVVLKLQGACGSCPSSSMTLKMGIESRLRDKIPEIMSVEQFLESETGGLELNDENIEKVLSELRPYLSGTGGGGLELVEIDGYVVKVRLTGPAAGVMTVRVALTQKLRETIP 227          
BLAST of DY271288 vs. ExPASy Swiss-Prot
Match: NIFU1_ARATH (NifU-like protein 1, chloroplastic OS=Arabidopsis thaliana GN=NIFU1 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.408e-21
Identity = 59/147 (40.14%), Postives = 92/147 (62.59%), Query Frame = 3
Query:  171 SAIELPLTAENIESVLDEIRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVA-VESVADEETGLELNEENIEKVLEEIRPYLVGAAGGSLELVAIDEPIVKVRITGPAAGVMTVRVAVTQKLRE 608
            SA    LT +N++ VL+++RP+LISDGGNV +  ++  VV LKLQGAC SCPSS  TM MGIER L EK  + +  +  V DEE   ++  E +   L+ +RP  +   GGS+E+++++     V+  GP +  M ++ A+ +K ++
Sbjct:   79 SAQTFDLTPQNVDLVLEDVRPFLISDGGNVDVVSVEDGVVSLKLQGACTSCPSSSTTMTMGIERVLKEKFGDALKDIRQVFDEEV-KQITVEAVNAHLDILRP-AIKNYGGSVEVLSVEGEDCVVKYVGPESIGMGIQAAIKEKFKD 223          
BLAST of DY271288 vs. ExPASy Swiss-Prot
Match: YUTI_BACSU (Putative nitrogen fixation protein yutI OS=Bacillus subtilis GN=yutI PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.781e-16
Identity = 37/70 (52.86%), Postives = 55/70 (78.57%), Query Frame = 3
Query:  198 ENIESVLDEIRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVESV 407
            E ++ VLD++RP+L+ DGG+  L ++D  +V+L+L GACGSCPSS +T+K GIER L+E++P +V VE V
Sbjct:   41 EQVQEVLDKLRPFLLRDGGDCELVDVDEGIVKLRLLGACGSCPSSTITLKAGIERALLEEVPGVVEVEQV 110          
BLAST of DY271288 vs. ExPASy Swiss-Prot
Match: NIFU_ANASL (Nitrogen fixation protein nifU (Fragment) OS=Anabaena sp. (strain L31) GN=nifU PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.276e-14
Identity = 38/69 (55.07%), Postives = 55/69 (79.71%), Query Frame = 3
Query:  204 IESVLDE-IRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVESV 407
            I+ VLDE +RP LI+DGG+V L+++DG++V++ LQGACGSCPSS  T+K+ IE RL ++I   + VE+V
Sbjct:   44 IQKVLDEEVRPVLIADGGDVELYDVDGDIVKVVLQGACGSCPSSTATLKIAIESRLRDRINPSLVVEAV 112          
BLAST of DY271288 vs. ExPASy Swiss-Prot
Match: NIFU_ANASP (Nitrogen fixation protein nifU OS=Anabaena sp. (strain PCC 7120) GN=nifU PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 2.177e-14
Identity = 43/91 (47.25%), Postives = 62/91 (68.13%), Query Frame = 3
Query:  150 KAVATPDSAIELPLTAEN----IESVLDE-IRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVESV 407
            K    P+S  + PLT       I+ VLDE +RP LI+DGG+V L+++DG++V++ LQGACGSC SS  T+K+ IE RL ++I   + VE+V
Sbjct:  210 KPTNIPNSGQKRPLTNVQKIALIQKVLDEEVRPVLIADGGDVELYDVDGDIVKVVLQGACGSCSSSTATLKIAIESRLRDRINPSLVVEAV 300          
BLAST of DY271288 vs. ExPASy Swiss-Prot
Match: NIFU_ANAAZ (Nitrogen fixation protein nifU OS=Anabaena azollae GN=nifU PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 2.177e-14
Identity = 43/91 (47.25%), Postives = 62/91 (68.13%), Query Frame = 3
Query:  150 KAVATPDSAIELPLTAEN----IESVLDE-IRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVESV 407
            K    P+S  + PLT       I+ VLDE +RP LI+DGG+V L+++DG++V++ LQGACGSC SS  T+K+ IE RL ++I   + VE+V
Sbjct:  210 KPTNIPNSGQKRPLTNVQKIALIQKVLDEEVRPVLIADGGDVELYDVDGDIVKVVLQGACGSCSSSTATLKIAIESRLRDRINPSLVVEAV 300          
BLAST of DY271288 vs. ExPASy Swiss-Prot
Match: NFU1_DROME (NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila melanogaster GN=CG32500 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 7.003e-13
Identity = 40/96 (41.67%), Postives = 61/96 (63.54%), Query Frame = 3
Query:  192 TAENIESVLD-EIRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVESVADE-ETGLELNEENIEKVLEEIR 473
            T   I+ +LD  IRP +  DGG++     +G VV+LK+QG+C SCPSS++T+K G++  L   IPE+ +VE V DE +  +E   E  EK L+ ++
Sbjct:  178 TVMMIKELLDTRIRPTVQEDGGDIVFMGYEGGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQFYIPEVESVEQVFDEADRMIESEFERFEKNLKTLK 273          
BLAST of DY271288 vs. ExPASy Swiss-Prot
Match: NFU1_DROPE (NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila persimilis GN=GL13432 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.038e-12
Identity = 43/107 (40.19%), Postives = 63/107 (58.88%), Query Frame = 3
Query:  192 TAENIESVLD-EIRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVESVADEETGLELNE-ENIEKVLEEIRP--YLVGAAGG 500
            T   I+ +LD  IRP +  DGG++     +  VV+LK+QG+C SCPSS++T+K G++  L   IPE+ +VE V D+   +   E E  EK L++  P    VG  GG
Sbjct:  174 TVMMIKELLDTRIRPTVQEDGGDIVFISYENGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQFYIPEVESVEQVFDDADRMADKEFERFEKNLKQKEPAGAPVGIGGG 280          
The following BLAST results are available for this feature:
BLAST of DY271288 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
NIFU2_ARATH8.404e-7579.44NifU-like protein 2, chloroplastic OS=Arabidopsis ... [more]
NIFU1_ORYSJ1.701e-5961.19NifU-like protein 1, chloroplastic OS=Oryza sativa... [more]
NIFU3_ARATH1.648e-5474.66NifU-like protein 3, chloroplastic OS=Arabidopsis ... [more]
NIFU1_ARATH1.408e-2140.14NifU-like protein 1, chloroplastic OS=Arabidopsis ... [more]
YUTI_BACSU1.781e-1652.86Putative nitrogen fixation protein yutI OS=Bacillu... [more]
NIFU_ANASL1.276e-1455.07Nitrogen fixation protein nifU (Fragment) OS=Anaba... [more]
NIFU_ANASP2.177e-1447.25Nitrogen fixation protein nifU OS=Anabaena sp. (st... [more]
NIFU_ANAAZ2.177e-1447.25Nitrogen fixation protein nifU OS=Anabaena azollae... [more]
NFU1_DROME7.003e-1341.67NFU1 iron-sulfur cluster scaffold homolog, mitocho... [more]
NFU1_DROPE2.038e-1240.19NFU1 iron-sulfur cluster scaffold homolog, mitocho... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YH15FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271288 ID=DY271288; Name=DY271288; organism=Citrus clementina; type=EST; length=986bp
CTCCTTCTTGTTCTCGTCCTGCCTCTAAGAGTACTAAAAGTTTCTTTGGA
GAACGAGTTTCGCTTACGAGGTGGCGGAATCCGGTGCGTCACAGCTCGTG
TCGGTTACTGCTGATTCGGAAGCGTGGGGCCGCGCGAAGGAACGTCATAA
AGGCTGTGGCTACTCCTGATTCAGCTATTGAGTTACCTTTAACTGCTGAG
AATATTGAAAGTGTATTGGATGAAATTCGACCATATCTTATATCAGATGG
GGGAAATGTGGCATTACATGAGATTGATGGCAATGTTGTACGATTGAAGC
TACAGGGAGCATGTGGGTCTTGTCCCAGTTCTGTTATGACGATGAAGATG
GGTATTGAGCGTCGCTTAATGGAGAAGATCCCCGAGATAGTTGCAGTGGA
ATCGGTAGCAGATGAAGAAACTGGGCTTGAGCTGAATGAAGAAAATATAG
AGAAGGTACTTGAGGAAATCAGGCCCTATCTTGTTGGGGCAGCAGGTGGA
TCACTTGAACTTGTGGCAATTGATGAGCCAATAGTTAAAGTTCGAATTAC
GGGTCCGGCAGCTGGAGTCATGACTGTTCGTGTGGCTGTTACCCAAAAGT
TGCGTGAAAAAATCCCCAGCCATTGCAGCAGTTCAACTTCTGTAATGTCG
AGCAGCTGGGGTCAAGACTATTCGTGTGGCTGTTACCCCAAAGTTGCGTG
AAAAAATCCCCACCATTGCAGCAGTTCAACTTCTGTAATGTCGATATCTA
ATAGGAGTAGTAACCCTTTGTACAGCGGCAATTATGGAAAAAACCATAAT
TATTTATTATTACCAAAAAAAAAAAAAAAAAAACCCCAACTTTCCTGGAA
AAAAGTTGGCTTTAAAAAAAAACTTTGCTTATTCTTTTTGTTGGAACCAA
CACGGGTCTCTTTCGGTTAAAATTAAATCTCTTTTTTGCCGCCCGGGCGG
AAACCCCCCAAAAGTGAAGGCAAATAAAAGGGCACA
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