DY271293

Overview
NameDY271293
Unique NameDY271293
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1004
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271293 vs. ExPASy Swiss-Prot
Match: CTR1_ARATH (Serine/threonine-protein kinase CTR1 OS=Arabidopsis thaliana GN=CTR1 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.506e-20
Identity = 39/96 (40.62%), Postives = 58/96 (60.42%), Query Frame = 1
Query:  295 DLEELKELGSGTFGTVYHGKWRGTDVAIKRIKKSCFTGRSSEQERLTLEFWREAEILSKLHHPNVVAFYGVVQDGPGGTLATVTEFMVNGSLRHVL 582
            DL   +++G+G+FGTV+  +W G+DVA+K + +  F       ER+  EF RE  I+ +L HPN+V F G V   P   L+ VTE++  GSL  +L
Sbjct:  550 DLNIKEKIGAGSFGTVHRAEWHGSDVAVKILMEQDF-----HAERVN-EFLREVAIMKRLRHPNIVLFMGAVTQPP--NLSIVTEYLSRGSLYRLL 637          

HSP 2 Score: 47.7506 bits (112), Expect = 9.506e-20
Identity = 27/52 (51.92%), Postives = 35/52 (67.31%), Query Frame = 3
Query:  612 LDRRKRLIIAMDAAFGMEYLHSKN--IVHFDLKCDNLLVNLKDPIRPICKGG 761
            LD R+RL +A D A GM YLH++N  IVH DLK  NLLV+ K  ++ +C  G
Sbjct:  646 LDERRRLSMAYDVAKGMNYLHNRNPPIVHRDLKSPNLLVDKKYTVK-VCDFG 696          
BLAST of DY271293 vs. ExPASy Swiss-Prot
Match: Y9963_DICDI (Probable serine/threonine-protein kinase DDB_G0272254 OS=Dictyostelium discoideum GN=DDB_G0272254 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.335e-17
Identity = 37/111 (33.33%), Postives = 61/111 (54.95%), Query Frame = 1
Query:  268 STLQIIKNEDLEELKELGSGTFGTVYHGKWRGTDVAIKRIKKSCFTGRSSEQERLTLEFWREAEILSKLHHPNVVAFYGVVQDGPGGTLATVTEFMVNGSLRHVLLSKESQ 600
            S++ +I   D++  KE+G G F  V  G W+G DVA+K++     + +   +E +  EF  E E+L  L HPN+V  YG   +     +  V EF+ +G+L  ++ SK S+
Sbjct: 1063 SSVTMINYSDIKIDKEIGKGHFSKVLKGNWKGKDVAVKKLN----SNKDKAREEMIQEFKAEVELLGSLQHPNLVTCYGYSLN----PMCIVMEFLPSGNLFELIHSKPSE 1165          

HSP 2 Score: 43.1282 bits (100), Expect = 2.335e-17
Identity = 21/44 (47.73%), Postives = 29/44 (65.91%), Query Frame = 3
Query:  594 ESMSRHLDRRKRLIIAMDAAFGMEYLHSKNIVHFDLKCDNLLVN 725
            +  S  LD    L IA D A GM++LH++NI+H DLK  NLL++
Sbjct: 1166 QQQSIKLDSTLILAIAFDIARGMQHLHTRNIIHRDLKSSNLLMD 1209          
BLAST of DY271293 vs. ExPASy Swiss-Prot
Match: KINX_DICDI (Probable serine/threonine-protein kinase kinX OS=Dictyostelium discoideum GN=kinX PE=3 SV=2)

HSP 1 Score: 65.0846 bits (157), Expect = 1.469e-16
Identity = 45/128 (35.16%), Postives = 69/128 (53.91%), Query Frame = 1
Query:  238 VDLALGNFDISTLQIIKNEDLEELKELGSGTFGTVYHGKWRGTDVAIKRIKKSCFTGRSSEQERLTLEFW--REAEILSKLHHPNVVAFYGVVQDGPGGTLATVTEFMVNGSLRHVLLSKESQCPGIL 615
            VD ++ +FD +    IK EDL+ + E+GSG FG V+ G++ G  VAIK+I          +  R+ LE +  RE E +    HPNV+ F G+ ++   G L  VTE +  G L++ L ++    P  L
Sbjct:    4 VDTSVPSFDRAWS--IKYEDLDFISEIGSGGFGKVFKGEYLGAPVAIKKIHI-----LPDDPNRVDLEKFLNREIETIKLFTHPNVIQFVGISEN--NGILFIVTELIEGGDLQYYLKNQSIDLPWFL 122          

HSP 2 Score: 42.743 bits (99), Expect = 1.469e-16
Identity = 25/51 (49.02%), Postives = 32/51 (62.75%), Query Frame = 3
Query:  627 RLIIAMDAAFGMEYLHSKNIVHFDLKCDNLLVNLKDPIRPICKGGDFWFGQ 779
            R  IA+D +  M YLHSK+IVH DLK  NLLV+    I+ +C   DF F +
Sbjct:  123 RANIALDVSLAMSYLHSKSIVHRDLKSTNLLVDKNWKIK-VC---DFGFAR 169          
BLAST of DY271293 vs. ExPASy Swiss-Prot
Match: YTYK2_DICDI (Probable tyrosine-protein kinase DDB_G0283397 OS=Dictyostelium discoideum GN=DDB_G0283397 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 9.236e-16
Identity = 42/106 (39.62%), Postives = 55/106 (51.89%), Query Frame = 1
Query:  283 IKNEDLEELKELGSGTFGTVYHGKWRGTDVAIKRIKKSCFTGRSSEQERLTLEFWREAEILSKLHHPNVVAFYGVVQ-DGPGGTLATVTEFMVNGSLRHVLLSKES 597
            I + +L   KE+G G FG VY  +WRG  VA+K+I    F   +      T  F +E  I+SKL HP  V F G    DGP    + + E+M  GSLR +L  K S
Sbjct:  172 IPSRELTVEKEIGQGFFGKVYKARWRGKSVALKKITLIKFRDLTE-----TEIFDKEVSIMSKLCHPTCVMFIGACSLDGPSNDRSIIMEYMEGGSLRRLLDEKSS 272          

HSP 2 Score: 36.1946 bits (82), Expect = 9.236e-16
Identity = 22/48 (45.83%), Postives = 26/48 (54.17%), Query Frame = 3
Query:  594 ESMSRHLDRRKRLIIAMDAAFGMEYLHSK----NIVHFDLKCDNLLVN 725
            E  S HL    +L IA D A GM YLH+      IVH DL   N+L+N
Sbjct:  269 EKSSYHLPPSLQLSIARDIAEGMNYLHTNFKEGPIVHRDLTSSNILLN 316          
BLAST of DY271293 vs. ExPASy Swiss-Prot
Match: Y4291_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At4g29180 OS=Arabidopsis thaliana GN=At4g29180 PE=2 SV=2)

HSP 1 Score: 64.6994 bits (156), Expect = 9.752e-15
Identity = 38/103 (36.89%), Postives = 59/103 (57.28%), Query Frame = 1
Query:  310 KELGSGTFGTVYHGKWR-GTDVAIKRIKKSCF-----TGRSSEQERLTLEFWREAEILSKLHHPNVVAFYGVVQDGPGGTLATVTEFMVNGSLRHVLLSKESQ 600
            K +G G FG VY G    GT++A+K I  S F     +  SS   +++ EF  EAE+L  +HH N+ +F G   D  G ++A + E+M NG+L+  L S+ ++
Sbjct:  571 KVIGKGGFGIVYLGSLEDGTEIAVKMINDSSFGKSKGSSSSSSSSQVSKEFQVEAELLLTVHHRNLASFVGYCDD--GRSMALIYEYMANGNLQDYLSSENAE 671          

HSP 2 Score: 36.965 bits (84), Expect = 9.752e-15
Identity = 21/41 (51.22%), Postives = 27/41 (65.85%), Query Frame = 3
Query:  612 LDRRKRLIIAMDAAFGMEYLH---SKNIVHFDLKCDNLLVN 725
            L   KRL IA+D+A G+EYLH      IVH D+K  N+L+N
Sbjct:  673 LSWEKRLHIAIDSAQGLEYLHHGCRPPIVHRDVKTANILLN 713          
BLAST of DY271293 vs. ExPASy Swiss-Prot
Match: SHKB_DICDI (Dual specificity protein kinase shkB OS=Dictyostelium discoideum GN=shkB PE=3 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 9.828e-15
Identity = 35/94 (37.23%), Postives = 55/94 (58.51%), Query Frame = 1
Query:  313 ELGSGTFGTVYHGKWRGTDVAIKRIKKSCFTGRSSEQERLTLEFWREAEILSKLHHPNVVAFYGVVQDGPGGTLATVTEFMVNGSLRHVLLSKE 594
            +LGSG FG+VY G  RG +VAIK++ ++ F      +E    EF +E  +++KL +P+++ F G         L+ VTE M  GS+  +L +KE
Sbjct:  179 KLGSGAFGSVYKGIVRGKEVAIKKLTQTVF------EENTMNEFKKEVSLMAKLRNPHLLLFMGACT--APEDLSIVTELMPKGSVHSLLRAKE 264          

HSP 2 Score: 42.3578 bits (98), Expect = 9.828e-15
Identity = 19/45 (42.22%), Postives = 29/45 (64.44%), Query Frame = 3
Query:  591 RESMSRHLDRRKRLIIAMDAAFGMEYLHSKNIVHFDLKCDNLLVN 725
            +E  S  +  ++ ++IA D   GM +LH+ NI+H DLK  NLLV+
Sbjct:  263 KEDTSDFITFKRAILIARDTVLGMTWLHASNILHLDLKPANLLVD 307          
BLAST of DY271293 vs. ExPASy Swiss-Prot
Match: PYK1_DICDI (Dual specificity protein kinase pyk1 OS=Dictyostelium discoideum GN=splA PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 1.241e-14
Identity = 44/96 (45.83%), Postives = 51/96 (53.12%), Query Frame = 1
Query:  295 DLEELKELGSGTFGTVYHGKWRGTDVAIKRIKKSCFTGRSSEQERLTLEFWREAEILSKLHHPNVVAFYGVVQDGPGGTLATVTEFMVNGSLRHVL 582
            +LE  + +G G FG V  G WR TDVAIK I +  F  +SS      + F  E  ILSKL HPNVV F G    G       VTE+M  GSLR  L
Sbjct: 2114 ELEFGQTIGKGFFGEVKRGYWRETDVAIKIIYRDQFKTKSS-----LVMFQNEVGILSKLRHPNVVQFLGACTAGGEDHHCIVTEWMGGGSLRQFL 2204          

HSP 2 Score: 33.113 bits (74), Expect = 1.241e-14
Identity = 23/58 (39.66%), Postives = 31/58 (53.45%), Query Frame = 3
Query:  627 RLIIAMDAAFGMEYLH--SKNIVHFDLKCDNLLVNLK-DPIRPI--------CKGGDF 767
            RL +A+D A GM YLH  +  I+H DL   N+L++   DP  P+        CK  DF
Sbjct: 2218 RLKLALDIAKGMNYLHGWTPPILHRDLSSRNILLDHNIDPKNPVVSSRQDIKCKISDF 2275          
BLAST of DY271293 vs. ExPASy Swiss-Prot
Match: DRKD_DICDI (Probable serine/threonine-protein kinase drkD OS=Dictyostelium discoideum GN=drkD PE=2 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 1.257e-14
Identity = 31/92 (33.70%), Postives = 51/92 (55.43%), Query Frame = 1
Query:  316 LGSGTFGTVYHGKWRGTDVAIKRIKKSCFTGRSSEQERLTLEFWREAEILSKLHHPNVVAFYGVVQDGPGGTLATVTEFMVNGSLRHVLLSK 591
            +G G +G V+ G WRGT+VA+K +         +   +L  +  +E ++L KL HPN+V F G   +     +  VTE++  GSL ++LL +
Sbjct:  857 IGRGGYGQVFRGSWRGTEVAVKML------FNDNVNLKLISDLRKEVDLLCKLRHPNIVLFMGACTEPSSPCI--VTEYLSRGSLANILLDE 940          

HSP 2 Score: 41.5874 bits (96), Expect = 1.257e-14
Identity = 23/43 (53.49%), Postives = 28/43 (65.12%), Query Frame = 3
Query:  603 SRHLDRRKRLIIAMDAAFGMEYLHSKN--IVHFDLKCDNLLVN 725
            S  +D   RL +  D A GM YLHS+N  I+H DLK DNLLV+
Sbjct:  941 SIEMDWGLRLQLGFDCARGMTYLHSRNPIIIHRDLKTDNLLVD 983          
BLAST of DY271293 vs. ExPASy Swiss-Prot
Match: YR831_MIMIV (Putative serine/threonine-protein kinase/receptor R831 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R831 PE=4 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 1.625e-14
Identity = 39/101 (38.61%), Postives = 57/101 (56.44%), Query Frame = 1
Query:  280 IIKNEDLEELKELGSGTFGTVYHGKWRGTDVAIKRIKKSCFTGRSSEQERLTLEFWREAEILSKLHHPNVVAFYGVVQDGPGGTLATVTEFMVNGSLRHVL 582
            II  +++   K++G G++G V++GKW+G DVA+K+  K   +      E   LEF  E   LS+L H N+V F G     P   +  VTE+M  G+LR VL
Sbjct: 1358 IINYDEISIGKQIGLGSYGIVFNGKWKGVDVAVKKFVKQKLS------ETQLLEFRAEMAFLSELKHSNIVTFIGACIKKP--NICIVTEYMRMGNLRDVL 1450          

HSP 2 Score: 32.7278 bits (73), Expect = 1.625e-14
Identity = 17/35 (48.57%), Postives = 24/35 (68.57%), Query Frame = 3
Query:  627 RLIIAMDAAFGMEYLHSKN--IVHFDLKCDNLLVN 725
            +L +   AA G++YLHS N  IVH D+K  N+LV+
Sbjct: 1462 KLKLLYGAAMGIDYLHSSNPMIVHRDIKPANILVD 1496          

HSP 3 Score: 58.5362 bits (140), Expect = 2.330e-12
Identity = 37/96 (38.54%), Postives = 51/96 (53.12%), Query Frame = 1
Query:  295 DLEELKELGSGTFGTVYHGKWRGTDVAIKRIKKSCFTGRSSEQERLTLEFWREAEILSKLHHPNVVAFYGVVQDGPGGTLATVTEFMVNGSLRHVL 582
            +LE  + LG+G +G VY   W+GT+VA+K I        S + ER    F+ E +I++ L HPNVV F       P   +  V EFM  GSL  +L
Sbjct:  785 ELEIGETLGTGGYGEVYKSIWKGTEVAVKLISSKHV---SKDMER---SFFEEVKIMTSLRHPNVVLFMAASTKSP--NMCIVMEFMSLGSLYDLL 872          

HSP 4 Score: 35.039 bits (79), Expect = 2.330e-12
Identity = 17/35 (48.57%), Postives = 24/35 (68.57%), Query Frame = 3
Query:  627 RLIIAMDAAFGMEYLHSKNIVHFDLKCDNLLVNLK 731
            ++ +A  A+ GM +LHS  IVH DLK  NLL++ K
Sbjct:  885 KIKMAYQASKGMHFLHSSGIVHRDLKSLNLLLDSK 919          
BLAST of DY271293 vs. ExPASy Swiss-Prot
Match: TNI3K_RAT (Serine/threonine-protein kinase TNNI3K OS=Rattus norvegicus GN=Tnni3k PE=2 SV=3)

HSP 1 Score: 59.3066 bits (142), Expect = 2.143e-14
Identity = 37/96 (38.54%), Postives = 53/96 (55.21%), Query Frame = 1
Query:  295 DLEELKELGSGTFGTVYHGKWRGTDVAIKRIKKSCFTGRSSEQERLTLEFWREAEILSKLHHPNVVAFYGVVQDGPGGTLATVTEFMVNGSLRHVL 582
            ++E  + +GSG+FG VY G+ R   VAIKR + + +  +S         F RE  IL +L+HP VV F G   D P    A VT+++  GSL  +L
Sbjct:  462 EIEFHEIIGSGSFGKVYKGRCRNKIVAIKRYRANTYCSKSDVD-----MFCREVSILCQLNHPCVVQFVGACLDDP-SQFAIVTQYISGGSLFSLL 551          

HSP 2 Score: 41.2022 bits (95), Expect = 2.143e-14
Identity = 22/41 (53.66%), Postives = 29/41 (70.73%), Query Frame = 3
Query:  606 RHLDRRKRLIIAMDAAFGMEYLHS--KNIVHFDLKCDNLLV 722
            R LD + +LIIA+D A GMEYLHS  + I+H DL   N+L+
Sbjct:  556 RILDLQSKLIIAVDVAKGMEYLHSLTQPIIHRDLNSHNILL 596          
The following BLAST results are available for this feature:
BLAST of DY271293 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
CTR1_ARATH9.506e-2040.63Serine/threonine-protein kinase CTR1 OS=Arabidopsi... [more]
Y9963_DICDI2.335e-1733.33Probable serine/threonine-protein kinase DDB_G0272... [more]
KINX_DICDI1.469e-1635.16Probable serine/threonine-protein kinase kinX OS=D... [more]
YTYK2_DICDI9.236e-1639.62Probable tyrosine-protein kinase DDB_G0283397 OS=D... [more]
Y4291_ARATH9.752e-1536.89Probable LRR receptor-like serine/threonine-protei... [more]
SHKB_DICDI9.828e-1537.23Dual specificity protein kinase shkB OS=Dictyostel... [more]
PYK1_DICDI1.241e-1445.83Dual specificity protein kinase pyk1 OS=Dictyostel... [more]
DRKD_DICDI1.257e-1433.70Probable serine/threonine-protein kinase drkD OS=D... [more]
YR831_MIMIV1.625e-1438.61Putative serine/threonine-protein kinase/receptor ... [more]
TNI3K_RAT2.143e-1438.54Serine/threonine-protein kinase TNNI3K OS=Rattus n... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP9YH21FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271293 ID=DY271293; Name=DY271293; organism=Citrus clementina; type=EST; length=1004bp
CTAAAGCCTGATGTATCTGTGATGCCTCAGAGTGGGTCACGTATTAATTT
TGATGAGGGCAGTCAGAGAGAGTCATCTAGCATTGTTGGACCCAGCACCA
TGGAAACACATCCAGATTATAGCCGTTCTGAGCTCAAGGGTAATGAGAGC
TTGCAGTCAGAGGTTGTGAACCATAGAATACAGGAATCAGATTATGAGGA
AGGGAGATTGGATCTTCCAACTGCTGGTATACCTCTCGTTGATCTTGCAC
TGGGAAATTTTGATATCAGTACGCTCCAGATTATAAAAAATGAAGATTTG
GAAGAGCTGAAAGAACTGGGTTCTGGCACATTTGGGACTGTTTACCATGG
AAAATGGAGGGGAACAGATGTTGCTATAAAGCGAATAAAAAAGAGTTGTT
TCACTGGTCGTTCATCAGAGCAAGAAAGATTGACTCTGGAGTTCTGGCGT
GAAGCTGAAATTCTTTCTAAGCTCCACCATCCGAATGTGGTGGCCTTTTA
TGGTGTAGTACAAGATGGACCGGGAGGAACGCTGGCTACCGTCACAGAAT
TCATGGTGAATGGCTCTCTTAGACATGTTTTACTTAGCAAAGAGAGTCAA
TGTCCAGGCATCTTGATCGTCGTAAGAGGCTTATTATTGCAATGGATGCG
GCCTTTGGAATGGAATATTTGCATTCAAAGAATATTGTGCATTTTGATTT
GAAGTGTGACAATTTGCTTGTCAACTTGAAGGATCCTATACGACCCATTT
GCAAGGGAGGTGATTTTTGGTTTGGCCAAAATTAAAAGAAAATACCTTGG
TCCCTGGTGGTGGGAGGGGAACCCTTCCATGGAAGGCTCCAAAACCTTTT
GAATGGTAACCACCAGTAAGGGTGCCAAAAAAGGTATGCTTTTTGACCTT
TGATTTTTGACTTTGATAAGGAAAAAACAAAAGTTGGGACCTTGGGTTTA
AAAGGGGAAAAATTGTGGGGGTCCTTTTTGCCAGGGCCTTAATCCAAAAA
TTTA
back to top