DY271295

Overview
NameDY271295
Unique NameDY271295
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1000
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271295 vs. ExPASy Swiss-Prot
Match: ELI_PEA (Early light-induced protein, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 3.300e-26
Identity = 69/121 (57.02%), Postives = 83/121 (68.60%), Query Frame = 3
Query:  138 SGANQLSSVK--YLPSLRRNVNLSVRCTAXXXXXXXXXXXX-PTIPKAE---PQPP--KKPRMNTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSV 476
            S  NQ +++   Y+P+LRRNV+L VR  A             PT P A    PQP   + P+M+T FS++ AFSGPAPERINGRLAMIGFVAA+GVEI+KGQ +  QLS GGVAWFLGTSV
Sbjct:   21 SRVNQFTNIPSVYIPTLRRNVSLKVRSMAEGEPKEQSKVAVDPTTPTASTPTPQPAYTRPPKMSTKFSDLMAFSGPAPERINGRLAMIGFVAAMGVEIAKGQGLSEQLSGGGVAWFLGTSV 141          
BLAST of DY271295 vs. ExPASy Swiss-Prot
Match: ELI6_HORVU (Low molecular mass early light-inducible protein HV60, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.453e-13
Identity = 37/64 (57.81%), Postives = 44/64 (68.75%), Query Frame = 3
Query:  282 PPKKPRMNTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDG-GVAWFLGT 470
            PP KP+ +T   +  AFSGPAPERINGRLAM+GFV AL VE  +G  + +QL  G G AWF  T
Sbjct:   45 PPNKPKASTSIWDAMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYT 108          
BLAST of DY271295 vs. ExPASy Swiss-Prot
Match: ELI9_HORVU (Low molecular mass early light-inducible protein HV90, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 4.184e-13
Identity = 37/64 (57.81%), Postives = 44/64 (68.75%), Query Frame = 3
Query:  282 PPKKPRMNTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDG-GVAWFLGT 470
            PP KP+ +T   +  AFSGPAPERINGRLAM+GFV AL VE  +G  + +QL  G G AWF  T
Sbjct:   50 PPNKPKASTSIWDEMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYT 113          
BLAST of DY271295 vs. ExPASy Swiss-Prot
Match: DS22_CRAPL (Desiccation stress protein DSP-22, chloroplastic OS=Craterostigma plantagineum GN=DSP-22 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 5.464e-13
Identity = 35/52 (67.31%), Postives = 45/52 (86.54%), Query Frame = 3
Query:  318 EVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTS 473
            ++F+F G APERINGR AMIGFVAA+GVE++ G+DVF+Q+ +GGV WFL TS
Sbjct:   90 DLFSFDGLAPERINGRSAMIGFVAAVGVELATGRDVFSQVFNGGVMWFLLTS 141          
BLAST of DY271295 vs. ExPASy Swiss-Prot
Match: ELI5_HORVU (High molecular mass early light-inducible protein HV58, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.626e-12
Identity = 39/75 (52.00%), Postives = 49/75 (65.33%), Query Frame = 3
Query:  255 PTIPKAEPQPPKKPRMNTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLS--DGGVAWFLGTS 473
            PT   A P+P  K + N    +  AFSGPAPERINGRLAM+GFVAAL VE ++G  +  Q+     G+AWFL T+
Sbjct:  100 PTTIPAAPKPVTK-KANPSVWDALAFSGPAPERINGRLAMVGFVAALSVEAARGGGLLDQVGMWSSGLAWFLATA 173          
The following BLAST results are available for this feature:
BLAST of DY271295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
ELI_PEA3.300e-2657.02Early light-induced protein, chloroplastic OS=Pisu... [more]
ELI6_HORVU2.453e-1357.81Low molecular mass early light-inducible protein H... [more]
ELI9_HORVU4.184e-1357.81Low molecular mass early light-inducible protein H... [more]
DS22_CRAPL5.464e-1367.31Desiccation stress protein DSP-22, chloroplastic O... [more]
ELI5_HORVU4.626e-1252.00High molecular mass early light-inducible protein ... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP9YH23FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271295 ID=DY271295; Name=DY271295; organism=Citrus clementina; type=EST; length=1000bp
CGCCGACCTCCTTTACCCAATTCCCGAATTATACTTTGTTCTGTTTTCTA
CTTCATAAATTAAAAATGGCCGCATCACTTGCTACTCAATCTATGCTGGC
AAGTCCTGTAGCAGCTCGTGTGACTGGTATCAGGACATCCGGGGCAAACC
AACTTTCCTCCGTCAAGTACTTGCCTAGTCTGCGTAGAAATGTCAACTTA
TCCGTGCGCTGCACGGCAGAGGATGAGCAGCAGCAGCAGCAGAAAGATGA
TCAACCAACCATACCGAAAGCTGAGCCTCAGCCACCAAAGAAGCCGCGGA
TGAACACGGGGTTCTCTGAGGTGTTCGCGTTCAGCGGGCCGGCACCGGAG
AGGATAAACGGGAGGCTTGCGATGATTGGGTTCGTGGCTGCATTGGGGGT
GGAGATATCCAAAGGTCAGGATGTGTTTGCCCAGTTATCAGACGGTGGGG
TTGCCTGGTTCTTGGGGACCAGTGTGTAAGCTCACGGTTGCGTCCCCAGG
ATCCTCTGTCTAAAAAGTGGAATCCCGAAGTCCAACTCGGATCTCTACAT
GACGAATAATACCTAGTTCTTGAAGGAAAAGTAAAAATCAATTCTCATTG
TAAAAACGCTATAGCATTTAACTACGTACTCGGTCGGACCAAAGAACGTC
ATTAAAAACGTTGTTCCCACATCCCCGACATTCTGCTGGCACAAAAACAA
GCGCAACAAAACCAACACCCAAATCCACACACCACACTTCACATCACCCC
CATAACCCCCGAACCACACAAAACCTCAACCACCCTCTTCCAACAACAAG
AGTCTAGTATCACTCTATCCTCTCTTATCCTGACTTGCACATTACTCACT
ACCTCCCCACCCATTCATTCTCCCTCTCTCATCTCCCCATCTTGACTCGC
CAACCACCTTAATCGCACACCCCACAGCCTCCCTAAGTAAACACCACCAC
ACAACATTACCACCTCCTCACTAAACCACCTACCCTCCCTCCTAAACCAC
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