DY271297
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY271297 vs. ExPASy Swiss-Prot
Match: PUS1_YARLI (tRNA pseudouridine synthase 1 OS=Yarrowia lipolytica GN=PUS1 PE=3 SV=1) HSP 1 Score: 127.102 bits (318), Expect = 1.443e-28 Identity = 67/176 (38.07%), Postives = 100/176 (56.82%), Query Frame = 1 Query: 208 PRQEPDPKRLKMSATSTSDDERDLIPAAAGADSTTK----------RQLCKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFTAKKFCDQRRYVYLLPVFA 705 PR + K+ KM D +R+ G D+ K RQ +RK+A YCG GY GMQ NP KTIEGD+ +A +GA+S+ + +P++ + R+ARTDKGV A G V+S + I+ +VE++NS+LP Q+R++G R +F +K C R Y YL+P ++ Sbjct: 37 PRGDHQAKKQKMDRRG--DRQREQEKQGEGRDTRRKTDGPLVADEVRQ--PKRKVACMIGYCGTGYHGMQLNPPQKTIEGDIFQAFVKAGAISQNNADDPKKSAFMRAARTDKGVHAAGNVISLKMIIEDENIVEKINSHLPEQLRVWGVSRTNKAFECRKLCSSRVYEYLMPTYS 208
BLAST of DY271297 vs. ExPASy Swiss-Prot
Match: TRUA_HUMAN (tRNA pseudouridine synthase A OS=Homo sapiens GN=PUS1 PE=1 SV=3) HSP 1 Score: 123.635 bits (309), Expect = 1.595e-27 Identity = 82/192 (42.71%), Postives = 102/192 (53.12%), Query Frame = 1 Query: 190 PSPSLSPRQ----EPDPKRLKMSATSTS------------DDERDLIPAAAGADSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGA---KTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGR-FCIDPPGLVERLNSNLPTQIRIFGYKRVTASFTAKKFCDQRRYVYLLPVFA 705 P PS SPR EP P S D E +G D +R+ +RKI + AY G GY GMQ+N G+ KTIE DL AL SG + E + R+ + R ARTDKGVSA GQVVS + + ID ++E++NS+LP+ IRI G KRVT F +K CD R Y YLLP FA Sbjct: 21 PRPSCSPRMAGNAEPPPAGAACPQDRRSCSGRAGGDRVWEDGEHPAKKLKSGGDEE-RREKPPKRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMRKMSFQRCARTDKGVSAAGQVVSLKVWLIDD--ILEKINSHLPSHIRILGLKRVTGGFNSKNRCDARTYCYLLPTFA 209
BLAST of DY271297 vs. ExPASy Swiss-Prot
Match: TRUA_RAT (tRNA pseudouridine synthase A OS=Rattus norvegicus GN=Pus1 PE=2 SV=2) HSP 1 Score: 118.627 bits (296), Expect = 5.131e-26 Identity = 74/174 (42.53%), Postives = 97/174 (55.75%), Query Frame = 1 Query: 196 PSLSPRQEPDPKRLKMSATSTSDDERDLIPAAAGADSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGA---KTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGR-FCIDPPGLVERLNSNLPTQIRIFGYKRVTASFTAKKFCDQRRYVYLLPVFA 705 P P +PD K + E G D R+L KR KI + AY G GY GMQ+N G+ +TIE DL AL +G + E + R+ + R ARTDKGVSA GQVVS + + ID +++++NS+LP+ IRI G KRVT F +K CD R Y Y+LP FA Sbjct: 37 PPALPSHQPDRKG--RGGWVWEETEHPAKRVKGGEDEEPPRKLPKR-KIVLLMAYSGKGYHGMQRNLGSSQFRTIEDDLVSALVQAGCIPENHGTDMRKMSFQRCARTDKGVSAAGQVVSLKVWLIDD--ILDKINSHLPSHIRILGLKRVTGGFNSKNKCDARTYCYMLPTFA 205
BLAST of DY271297 vs. ExPASy Swiss-Prot
Match: TRUA_MOUSE (tRNA pseudouridine synthase A OS=Mus musculus GN=Pus1 PE=1 SV=2) HSP 1 Score: 118.242 bits (295), Expect = 6.701e-26 Identity = 76/178 (42.70%), Postives = 101/178 (56.74%), Query Frame = 1 Query: 184 KLPSPSLSPRQEPDPKRLKMSATSTSDDERDLIPAAAGADSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGA---KTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGR-FCIDPPGLVERLNSNLPTQIRIFGYKRVTASFTAKKFCDQRRYVYLLPVFA 705 K+P P+L+ Q P R + E G D R+L KR KI + AY G GY GMQ+N G+ +TIE DL AL +G + E + R+ + R ARTDKGVSA GQVVS + + ID +++++NS+LP+ IRI G KRVT F +K CD R Y Y+LP FA Sbjct: 35 KVP-PALASHQ---PDRKGRGGWVWEETEHPAKRVKGGEDEEPPRKLPKR-KIVLLMAYSGKGYHGMQRNLGSSQFRTIEDDLVSALVQAGCIPENHGTDMRKMSFQRCARTDKGVSAAGQVVSLKVWLIDD--ILDKINSHLPSHIRILGLKRVTGGFNSKNKCDARTYCYMLPTFA 205
BLAST of DY271297 vs. ExPASy Swiss-Prot
Match: PUS1_ASHGO (tRNA pseudouridine synthase 1 OS=Ashbya gossypii GN=PUS1 PE=3 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 8.752e-26 Identity = 61/159 (38.36%), Postives = 88/159 (55.35%), Query Frame = 1 Query: 229 KRLKMSATSTSDDERDLIPAAAGADSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFTAKKFCDQRRYVYLLPVFA 705 K K T SD A S K +RK+A+ YCG GY GMQ NP +TIE +L EA +GA+S + + ++ + R+ARTDKGV A G V+S + I+ P + +++N +LP IR++G RV +F +K C R Y YLLP ++ Sbjct: 39 KEAKRPCTEDSD-------VALAGTSEEKEARLPKRKVAVMVGYCGTGYHGMQYNPPNRTIEAELFEAFVKAGAISRANSTDLKKNGFMRAARTDKGVHAGGNVISLKLIIEDPAIKDKINEHLPPGIRVWGISRVNKAFDCRKLCGSRWYEYLLPTYS 190
BLAST of DY271297 vs. ExPASy Swiss-Prot
Match: PUS1_SCHPO (tRNA pseudouridine synthase 1 OS=Schizosaccharomyces pombe GN=pus1 PE=1 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 1.493e-25 Identity = 55/125 (44.00%), Postives = 81/125 (64.80%), Query Frame = 1 Query: 331 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFTAKKFCDQRRYVYLLPVFA 705 +RK+A YCG GY GMQ NP +KTIEGDL +A +GAVS + +P++ AR+ARTDKGV A G V+S + ++ L+E++N +LP IR++ R SF + +C+ R Y Y++P +A Sbjct: 43 KRKVACLVGYCGSGYHGMQLNPPSKTIEGDLFDAFVKAGAVSSYNADDPKKVALARAARTDKGVHAAGNVISLKLIMEDEKLIEKVNEHLPPSIRLWDVIRTINSFNPRTYCESRIYEYMVPTYA 167
BLAST of DY271297 vs. ExPASy Swiss-Prot
Match: PUS1_KLULA (tRNA pseudouridine synthase 1 OS=Kluyveromyces lactis GN=PUS1 PE=3 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 1.493e-25 Identity = 60/151 (39.74%), Postives = 90/151 (59.60%), Query Frame = 1 Query: 259 SDDERDLIPAAAGADSTTKRQLCK--RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFTAKKFCDQRRYVYLLPVFA 705 S D+ + + A AD Q + +RK+A+ YCG GY GMQ NP TIE +L EA +GA+S+ + + ++ + R+ARTDKGV A G V+S + I+ P + E++N+ LP QIR++ RV +F +K C R Y YLLP ++ Sbjct: 72 SKDKDESVALAVDADGNPIPQEVRLPKRKVAVMIGYCGTGYHGMQYNPPNDTIEKELFEAFVRAGAISKANSTDLKKNGFQRAARTDKGVHAGGNVISLKLIIEDPEVKEKINNELPDQIRVWDISRVNKAFDCRKMCSSRWYEYLLPTYS 222
BLAST of DY271297 vs. ExPASy Swiss-Prot
Match: PUS1_CANGA (tRNA pseudouridine synthase 1 OS=Candida glabrata GN=PUS1 PE=3 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 2.156e-24 Identity = 52/125 (41.60%), Postives = 82/125 (65.60%), Query Frame = 1 Query: 331 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFTAKKFCDQRRYVYLLPVFA 705 +RK+A+ YCG GY GMQ NP TIE L +A +GA+S+ + + ++ ++ R+ARTDKGV A G ++S + I+ P +++++N+NLP IRI+ +RV +F +K C R Y YLLP ++ Sbjct: 86 KRKVAVMIGYCGTGYHGMQYNPPNPTIEAALFKAFVDAGAISKANSNDLKKNNFMRAARTDKGVHAGGNLISLKMIIEDPEIMDKINANLPEGIRIWDIERVNKAFDCRKMCSSRWYEYLLPTYS 210
BLAST of DY271297 vs. ExPASy Swiss-Prot
Match: PUS1_YEAST (tRNA pseudouridine synthase 1 OS=Saccharomyces cerevisiae GN=PUS1 PE=1 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 5.310e-23 Identity = 56/146 (38.36%), Postives = 84/146 (57.53%), Query Frame = 1 Query: 331 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFTAKKFCDQRRYVYLLPVFA-----PDSSSPRDRESVMASL 753 +RK+A+ YCG GY GMQ NP TIE L +A +GA+S+ + + ++ + R+ARTDKGV A G ++S + I+ P + +++N LP IR++ +RV +F +K C R Y YLLP ++ P S RD E L Sbjct: 74 KRKVAVMVGYCGTGYHGMQYNPPNPTIESALFKAFVEAGAISKDNSNDLKKNGFMRAARTDKGVHAGGNLISLKMIIEDPDIKQKINEKLPEGIRVWDIERVNKAFDCRKMCSSRWYEYLLPTYSLIGPKPGSILYRDIEESKTEL 219
BLAST of DY271297 vs. ExPASy Swiss-Prot
Match: PUS2_YEAST (tRNA pseudouridine synthase 2 OS=Saccharomyces cerevisiae GN=PUS2 PE=2 SV=3) HSP 1 Score: 95.9005 bits (237), Expect = 3.561e-19 Identity = 50/119 (42.02%), Postives = 72/119 (60.50%), Query Frame = 1 Query: 346 IFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFTAKKFCDQRRYVYLLPVF 702 + YCG GY GMQ NP KTIEG++ LF GA+SE + P++ + +ARTDKGV A+ ++S + + V +LN+ LP +IR++G + V F A+ CD R Y YL+P F Sbjct: 1 MLLGYCGSGYYGMQYNPPHKTIEGEILTKLFDVGAISEENSLAPKKNSFMAAARTDKGVHAMLNLLSLKITL-REDTVAKLNAALPPEIRVWGIQPVNKKFNARSACDSRWYQYLIPEF 118 The following BLAST results are available for this feature:
BLAST of DY271297 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 14
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Sequences
The
following sequences are available for this feature:
EST sequence >DY271297 ID=DY271297; Name=DY271297; organism=Citrus clementina; type=EST; length=939bpback to top |