DY271297

Overview
NameDY271297
Unique NameDY271297
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length939
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271297 vs. ExPASy Swiss-Prot
Match: PUS1_YARLI (tRNA pseudouridine synthase 1 OS=Yarrowia lipolytica GN=PUS1 PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.443e-28
Identity = 67/176 (38.07%), Postives = 100/176 (56.82%), Query Frame = 1
Query:  208 PRQEPDPKRLKMSATSTSDDERDLIPAAAGADSTTK----------RQLCKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFTAKKFCDQRRYVYLLPVFA 705
            PR +   K+ KM      D +R+      G D+  K          RQ   +RK+A    YCG GY GMQ NP  KTIEGD+ +A   +GA+S+ +  +P++  + R+ARTDKGV A G V+S +  I+   +VE++NS+LP Q+R++G  R   +F  +K C  R Y YL+P ++
Sbjct:   37 PRGDHQAKKQKMDRRG--DRQREQEKQGEGRDTRRKTDGPLVADEVRQ--PKRKVACMIGYCGTGYHGMQLNPPQKTIEGDIFQAFVKAGAISQNNADDPKKSAFMRAARTDKGVHAAGNVISLKMIIEDENIVEKINSHLPEQLRVWGVSRTNKAFECRKLCSSRVYEYLMPTYS 208          
BLAST of DY271297 vs. ExPASy Swiss-Prot
Match: TRUA_HUMAN (tRNA pseudouridine synthase A OS=Homo sapiens GN=PUS1 PE=1 SV=3)

HSP 1 Score: 123.635 bits (309), Expect = 1.595e-27
Identity = 82/192 (42.71%), Postives = 102/192 (53.12%), Query Frame = 1
Query:  190 PSPSLSPRQ----EPDPKRLKMSATSTS------------DDERDLIPAAAGADSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGA---KTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGR-FCIDPPGLVERLNSNLPTQIRIFGYKRVTASFTAKKFCDQRRYVYLLPVFA 705
            P PS SPR     EP P          S            D E       +G D   +R+   +RKI +  AY G GY GMQ+N G+   KTIE DL  AL  SG + E    + R+  + R ARTDKGVSA GQVVS + + ID   ++E++NS+LP+ IRI G KRVT  F +K  CD R Y YLLP FA
Sbjct:   21 PRPSCSPRMAGNAEPPPAGAACPQDRRSCSGRAGGDRVWEDGEHPAKKLKSGGDEE-RREKPPKRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMRKMSFQRCARTDKGVSAAGQVVSLKVWLIDD--ILEKINSHLPSHIRILGLKRVTGGFNSKNRCDARTYCYLLPTFA 209          
BLAST of DY271297 vs. ExPASy Swiss-Prot
Match: TRUA_RAT (tRNA pseudouridine synthase A OS=Rattus norvegicus GN=Pus1 PE=2 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 5.131e-26
Identity = 74/174 (42.53%), Postives = 97/174 (55.75%), Query Frame = 1
Query:  196 PSLSPRQEPDPKRLKMSATSTSDDERDLIPAAAGADSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGA---KTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGR-FCIDPPGLVERLNSNLPTQIRIFGYKRVTASFTAKKFCDQRRYVYLLPVFA 705
            P   P  +PD K          + E        G D    R+L KR KI +  AY G GY GMQ+N G+   +TIE DL  AL  +G + E    + R+  + R ARTDKGVSA GQVVS + + ID   +++++NS+LP+ IRI G KRVT  F +K  CD R Y Y+LP FA
Sbjct:   37 PPALPSHQPDRKG--RGGWVWEETEHPAKRVKGGEDEEPPRKLPKR-KIVLLMAYSGKGYHGMQRNLGSSQFRTIEDDLVSALVQAGCIPENHGTDMRKMSFQRCARTDKGVSAAGQVVSLKVWLIDD--ILDKINSHLPSHIRILGLKRVTGGFNSKNKCDARTYCYMLPTFA 205          
BLAST of DY271297 vs. ExPASy Swiss-Prot
Match: TRUA_MOUSE (tRNA pseudouridine synthase A OS=Mus musculus GN=Pus1 PE=1 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 6.701e-26
Identity = 76/178 (42.70%), Postives = 101/178 (56.74%), Query Frame = 1
Query:  184 KLPSPSLSPRQEPDPKRLKMSATSTSDDERDLIPAAAGADSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGA---KTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGR-FCIDPPGLVERLNSNLPTQIRIFGYKRVTASFTAKKFCDQRRYVYLLPVFA 705
            K+P P+L+  Q   P R         + E        G D    R+L KR KI +  AY G GY GMQ+N G+   +TIE DL  AL  +G + E    + R+  + R ARTDKGVSA GQVVS + + ID   +++++NS+LP+ IRI G KRVT  F +K  CD R Y Y+LP FA
Sbjct:   35 KVP-PALASHQ---PDRKGRGGWVWEETEHPAKRVKGGEDEEPPRKLPKR-KIVLLMAYSGKGYHGMQRNLGSSQFRTIEDDLVSALVQAGCIPENHGTDMRKMSFQRCARTDKGVSAAGQVVSLKVWLIDD--ILDKINSHLPSHIRILGLKRVTGGFNSKNKCDARTYCYMLPTFA 205          
BLAST of DY271297 vs. ExPASy Swiss-Prot
Match: PUS1_ASHGO (tRNA pseudouridine synthase 1 OS=Ashbya gossypii GN=PUS1 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 8.752e-26
Identity = 61/159 (38.36%), Postives = 88/159 (55.35%), Query Frame = 1
Query:  229 KRLKMSATSTSDDERDLIPAAAGADSTTKRQLCKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFTAKKFCDQRRYVYLLPVFA 705
            K  K   T  SD        A    S  K     +RK+A+   YCG GY GMQ NP  +TIE +L EA   +GA+S  +  + ++  + R+ARTDKGV A G V+S +  I+ P + +++N +LP  IR++G  RV  +F  +K C  R Y YLLP ++
Sbjct:   39 KEAKRPCTEDSD-------VALAGTSEEKEARLPKRKVAVMVGYCGTGYHGMQYNPPNRTIEAELFEAFVKAGAISRANSTDLKKNGFMRAARTDKGVHAGGNVISLKLIIEDPAIKDKINEHLPPGIRVWGISRVNKAFDCRKLCGSRWYEYLLPTYS 190          
BLAST of DY271297 vs. ExPASy Swiss-Prot
Match: PUS1_SCHPO (tRNA pseudouridine synthase 1 OS=Schizosaccharomyces pombe GN=pus1 PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.493e-25
Identity = 55/125 (44.00%), Postives = 81/125 (64.80%), Query Frame = 1
Query:  331 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFTAKKFCDQRRYVYLLPVFA 705
            +RK+A    YCG GY GMQ NP +KTIEGDL +A   +GAVS  +  +P++   AR+ARTDKGV A G V+S +  ++   L+E++N +LP  IR++   R   SF  + +C+ R Y Y++P +A
Sbjct:   43 KRKVACLVGYCGSGYHGMQLNPPSKTIEGDLFDAFVKAGAVSSYNADDPKKVALARAARTDKGVHAAGNVISLKLIMEDEKLIEKVNEHLPPSIRLWDVIRTINSFNPRTYCESRIYEYMVPTYA 167          
BLAST of DY271297 vs. ExPASy Swiss-Prot
Match: PUS1_KLULA (tRNA pseudouridine synthase 1 OS=Kluyveromyces lactis GN=PUS1 PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.493e-25
Identity = 60/151 (39.74%), Postives = 90/151 (59.60%), Query Frame = 1
Query:  259 SDDERDLIPAAAGADSTTKRQLCK--RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFTAKKFCDQRRYVYLLPVFA 705
            S D+ + +  A  AD     Q  +  +RK+A+   YCG GY GMQ NP   TIE +L EA   +GA+S+ +  + ++  + R+ARTDKGV A G V+S +  I+ P + E++N+ LP QIR++   RV  +F  +K C  R Y YLLP ++
Sbjct:   72 SKDKDESVALAVDADGNPIPQEVRLPKRKVAVMIGYCGTGYHGMQYNPPNDTIEKELFEAFVRAGAISKANSTDLKKNGFQRAARTDKGVHAGGNVISLKLIIEDPEVKEKINNELPDQIRVWDISRVNKAFDCRKMCSSRWYEYLLPTYS 222          
BLAST of DY271297 vs. ExPASy Swiss-Prot
Match: PUS1_CANGA (tRNA pseudouridine synthase 1 OS=Candida glabrata GN=PUS1 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 2.156e-24
Identity = 52/125 (41.60%), Postives = 82/125 (65.60%), Query Frame = 1
Query:  331 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFTAKKFCDQRRYVYLLPVFA 705
            +RK+A+   YCG GY GMQ NP   TIE  L +A   +GA+S+ +  + ++ ++ R+ARTDKGV A G ++S +  I+ P +++++N+NLP  IRI+  +RV  +F  +K C  R Y YLLP ++
Sbjct:   86 KRKVAVMIGYCGTGYHGMQYNPPNPTIEAALFKAFVDAGAISKANSNDLKKNNFMRAARTDKGVHAGGNLISLKMIIEDPEIMDKINANLPEGIRIWDIERVNKAFDCRKMCSSRWYEYLLPTYS 210          
BLAST of DY271297 vs. ExPASy Swiss-Prot
Match: PUS1_YEAST (tRNA pseudouridine synthase 1 OS=Saccharomyces cerevisiae GN=PUS1 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 5.310e-23
Identity = 56/146 (38.36%), Postives = 84/146 (57.53%), Query Frame = 1
Query:  331 RRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFTAKKFCDQRRYVYLLPVFA-----PDSSSPRDRESVMASL 753
            +RK+A+   YCG GY GMQ NP   TIE  L +A   +GA+S+ +  + ++  + R+ARTDKGV A G ++S +  I+ P + +++N  LP  IR++  +RV  +F  +K C  R Y YLLP ++     P S   RD E     L
Sbjct:   74 KRKVAVMVGYCGTGYHGMQYNPPNPTIESALFKAFVEAGAISKDNSNDLKKNGFMRAARTDKGVHAGGNLISLKMIIEDPDIKQKINEKLPEGIRVWDIERVNKAFDCRKMCSSRWYEYLLPTYSLIGPKPGSILYRDIEESKTEL 219          
BLAST of DY271297 vs. ExPASy Swiss-Prot
Match: PUS2_YEAST (tRNA pseudouridine synthase 2 OS=Saccharomyces cerevisiae GN=PUS2 PE=2 SV=3)

HSP 1 Score: 95.9005 bits (237), Expect = 3.561e-19
Identity = 50/119 (42.02%), Postives = 72/119 (60.50%), Query Frame = 1
Query:  346 IFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCIDPPGLVERLNSNLPTQIRIFGYKRVTASFTAKKFCDQRRYVYLLPVF 702
            +   YCG GY GMQ NP  KTIEG++   LF  GA+SE +   P++  +  +ARTDKGV A+  ++S +  +     V +LN+ LP +IR++G + V   F A+  CD R Y YL+P F
Sbjct:    1 MLLGYCGSGYYGMQYNPPHKTIEGEILTKLFDVGAISEENSLAPKKNSFMAAARTDKGVHAMLNLLSLKITL-REDTVAKLNAALPPEIRVWGIQPVNKKFNARSACDSRWYQYLIPEF 118          
The following BLAST results are available for this feature:
BLAST of DY271297 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
PUS1_YARLI1.443e-2838.07tRNA pseudouridine synthase 1 OS=Yarrowia lipolyti... [more]
TRUA_HUMAN1.595e-2742.71tRNA pseudouridine synthase A OS=Homo sapiens GN=P... [more]
TRUA_RAT5.131e-2642.53tRNA pseudouridine synthase A OS=Rattus norvegicus... [more]
TRUA_MOUSE6.701e-2642.70tRNA pseudouridine synthase A OS=Mus musculus GN=P... [more]
PUS1_ASHGO8.752e-2638.36tRNA pseudouridine synthase 1 OS=Ashbya gossypii G... [more]
PUS1_SCHPO1.493e-2544.00tRNA pseudouridine synthase 1 OS=Schizosaccharomyc... [more]
PUS1_KLULA1.493e-2539.74tRNA pseudouridine synthase 1 OS=Kluyveromyces lac... [more]
PUS1_CANGA2.156e-2441.60tRNA pseudouridine synthase 1 OS=Candida glabrata ... [more]
PUS1_YEAST5.310e-2338.36tRNA pseudouridine synthase 1 OS=Saccharomyces cer... [more]
PUS2_YEAST3.561e-1942.02tRNA pseudouridine synthase 2 OS=Saccharomyces cer... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YI01FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271297 ID=DY271297; Name=DY271297; organism=Citrus clementina; type=EST; length=939bp
GACGAAAAAAAATTATATGAGACAGGTTCAAAGACGGATTTTGCCTCGGC
CACTTTCCTATTCCCCGCGCTAGGGTTTTTGTTAGTGAGAGAGCTTGAGC
AATCTGATAATGGATACCTCGAACACATCGAAGTACTCTCACTCTGCTAA
CTGAAAATGGAAAACGCAGAAACCAACACCGAAAAATTGCCATCCCCATC
ACTGTCGCCACGACAAGAACCAGATCCCAAAAGGCTCAAAATGTCCGCAA
CCAGCACCTCCGACGACGAACGCGACCTCATCCCCGCCGCCGCAGGCGCC
GATTCTACCACTAAAAGACAGCTATGCAAGCGCCGCAAGATAGCCATATT
CTTCGCATACTGCGGCGTCGGCTACCAAGGCATGCAAAAGAACCCAGGCG
CCAAAACCATCGAAGGCGATCTCGAAGAAGCCCTCTTCCACTCCGGTGCC
GTCTCTGAACGGGACCGTGGCAACCCCAGGCGATATGACTGGGCCCGCTC
GGCCCGAACCGATAAGGGTGTAAGCGCCGTGGGCCAGGTTGTATCGGGTC
GCTTTTGTATCGACCCGCCCGGTCTTGTTGAAAGACTTAATTCTAATCTC
CCCACTCAGATTCGGATTTTTGGTTACAAGCGTGTGACGGCGTCGTTTAC
CGCCAAGAAGTTTTGCGATCAGAGGAGGTATGTGTATCTTCTTCCTGTAT
TTGCTCCTGATTCATCTTCTCCTAGGGATAGAGAGAGTGTTATGGCTAGT
TTAGGGTCTGGAAATGAACTTGTTTAGTGTTTAGAGGGTTCTGAAAGAGG
GCCGTAAAGTAATTGGGGGTTATGGGTAACCGTACTTTATCATTTAGGCC
TTTCCGTCCTAAGGATGAAAATGGCAGTTTGGAACCCCCCCGTTAAAAGT
TTGAACCGGAAGTCTCCCCTTGGAAAGGGGGGAAAAGGG
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