DY271306

Overview
NameDY271306
Unique NameDY271306
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length955
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271306 vs. ExPASy Swiss-Prot
Match: CH62_MAIZE (Chaperonin CPN60-2, mitochondrial OS=Zea mays GN=CPN60II PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.559e-18
Identity = 68/224 (30.36%), Postives = 99/224 (44.20%), Query Frame = 2
Query:  110 MLRLASRIASNVRLPNNN--------RLSWRRNYAHAGKDNNYGADD-VIQRPMLSELITNKDLN--------VIEESFLAS----------------------GARFVKEALNPICNPDEHGFKYWGVMSSAVAYRLLLAVKAKLDPKDIDVGLRLAVDAVAEILRCRAQA-STFEEISQVGTAAANGNKIIGELAAMACQRVGEHGHYIIRDNGKSKSESRV 661
            M R A+ +AS  R   ++        RL+W RNYA   KD  +G +   +    + EL     +         VIE+SF A                       GA  VK+  N   +    G     V++ A+      +V A ++  D+  G+ +AVDAV   L+  A+  ST EEI+QVGT +ANG + IGEL A A ++VG+ G   I D     +E  V
Sbjct:    1 MYRAAASLASKARQAGSSSAARQVGSRLAWSRNYA--AKDIKFGVEARALMLRGVEELADAVKVTMGPKGRNVVIEQSFGAPKVTKDGVTVAKSIEFKDRVKNVGASLVKQVANATNDTAGDGTTCATVLTKAIFTEGCKSVAAGMNAMDLRRGISMAVDAVVTNLKGMARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIADGNTLYNELEV 222          

HSP 2 Score: 45.0542 bits (105), Expect = 2.559e-18
Identity = 36/105 (34.29%), Postives = 51/105 (48.57%), Query Frame = 3
Query:  651 KVEFFNFMKLKWRPVSSYF-TNQKAKDCVLENPFFLILENMIVSQNIVEQAIARA--DSRPLLIGGEDG*KKLKGSLIRGKTGLQNKVSMAKP------RKTNMK 938
            ++E    MKL    +S YF TN KA+ C LE+P  LI +  + + + V + +  A    RPLLI  ED   +  G+LI  K     KV   K       RK N++
Sbjct:  219 ELEVVEGMKLDRGYISPYFITNSKAQKCELEDPLILIHDKKVTNMHAVVKVLEMALKKQRPLLIVAEDVESEALGTLIINKLRAGIKVCAVKAPGFGENRKANLQ 323          
BLAST of DY271306 vs. ExPASy Swiss-Prot
Match: CH61_CUCMA (Chaperonin CPN60-1, mitochondrial OS=Cucurbita maxima GN=CPN60-1 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.324e-12
Identity = 64/222 (28.83%), Postives = 100/222 (45.05%), Query Frame = 2
Query:  110 MLRLASRIASNVRLPNN------NRLSWRRNYAHAGKDNNYGADD--------------------------VIQRPMLSELITNKDLNV-----IEESFLASGARFVKEALNPICNPDEHGFKYWGVMSSAVAYRLLLAVKAKLDPKDIDVGLRLAVDAVAEILRCRAQA-STFEEISQVGTAAANGNKIIGELAAMACQRVGEHGHYIIRDNGKSKSESRV 661
            M R A+ +AS  RL  N      +R +WRRNYA   KD  +G +                           VI++   +  +T   + V      ++     GA  VK+  N   +    G     +++ A+      +V + ++  D+  G+ +AVD+V   L+ RA+  ST EEI+QVGT +ANG + IGEL A A ++VG+ G   I D     +E  V
Sbjct:    1 MHRFATGLASKARLARNGANQIASRSNWRRNYA--AKDVKFGVEARGLMLKGVEDLADAVKVTMGPKGRTVVIEQSFGAPKVTKDGVTVAKSIEFKDKVKNVGASLVKQVANATNDVAGDGTTCATILTKAIFTEGCKSVASGMNAMDLRRGISMAVDSVVTNLKSRARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITISDGKTMDNELEV 220          
BLAST of DY271306 vs. ExPASy Swiss-Prot
Match: CH601_VIBPA (60 kDa chaperonin 1 OS=Vibrio parahaemolyticus GN=groL1 PE=3 SV=2)

HSP 1 Score: 56.225 bits (134), Expect = 5.993e-12
Identity = 42/152 (27.63%), Postives = 73/152 (48.03%), Query Frame = 2
Query:  215 GADDVIQRPMLSELITNKDLNV-----IEESFLASGARFVKEALNPICNPDEHGFKYWGVMSSAVAYRLLLAVKAKLDPKDIDVGLRLAVDAVAEILR-CRAQASTFEEISQVGTAAANGNKIIGELAAMACQRVGEHGHYIIRDNGKSKSE 652
            G + V+ +   +  IT   ++V     +E+ F   GA+ VKE  +   +    G     V++ A+    L AV A ++P D+  G+  AV A  E L+    + +  + I+QVGT +AN +  +G + A A +RVG  G   + +    + E
Sbjct:   35 GRNVVLDKSFGAPTITKDGVSVAREIELEDKFQNMGAQMVKEVASKANDAAGDGTTTATVLAQAIVNEGLKAVAAGMNPMDLKRGIDKAVAAAVEQLKELSVECNDTKAIAQVGTISANSDASVGNIIAEAMERVGRDGVITVEEGQALQDE 186          

HSP 2 Score: 35.8094 bits (81), Expect = 5.993e-12
Identity = 27/57 (47.37%), Postives = 35/57 (61.40%), Query Frame = 3
Query:  693 VSSYF-TNQKAKDCVLENPFFLILENMIVSQNIVE-----QAIARADSRPLLIGGED 845
            +S YF  NQ+A    LENPF L+++  I   NI E     +A+A+A SRPLLI  ED
Sbjct:  200 LSPYFINNQEAGSVELENPFILLVDKKI--SNIRELLPTLEAVAKA-SRPLLIIAED 253          
BLAST of DY271306 vs. ExPASy Swiss-Prot
Match: CH601_VIBVY (60 kDa chaperonin 1 OS=Vibrio vulnificus (strain YJ016) GN=groL1 PE=3 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 1.010e-11
Identity = 42/139 (30.22%), Postives = 71/139 (51.08%), Query Frame = 2
Query:  215 GADDVIQRPMLSELITNKDLNV-----IEESFLASGARFVKEALNPICNPDEHGFKYWGVMSSAVAYRLLLAVKAKLDPKDIDVGLRLAVDAVAEILRCRAQ-ASTFEEISQVGTAAANGNKIIGELAAMACQRVGEHG 613
            G + V+ +   +  IT   ++V     +E+ F   GA+ VK+  +   +    G     V++ A+    L AV A ++P D+  G+  AV A  E L+  ++  ST  EI QVGT +AN +  +G++ A A ++VG  G
Sbjct:   35 GRNVVLDKSFGAPTITKDGVSVAREIELEDKFQNMGAQMVKQVASQANDVAGDGTTTATVLAQAIVNEGLKAVAAGMNPMDLKRGIDKAVAAAVEELKALSKDCSTSTEIEQVGTISANSDSSVGKIIAEAMEKVGRDG 173          

HSP 2 Score: 32.7278 bits (73), Expect = 1.010e-11
Identity = 25/57 (43.86%), Postives = 35/57 (61.40%), Query Frame = 3
Query:  693 VSSYF-TNQKAKDCVLENPFFLILENMIVSQNIVE-----QAIARADSRPLLIGGED 845
            +S YF  NQ++    LE+PF L+++  I   NI E     +A+A+A SRPLLI  ED
Sbjct:  200 LSPYFINNQESGSVELESPFILLVDKKI--SNIRELLPALEAVAKA-SRPLLIIAED 253          
BLAST of DY271306 vs. ExPASy Swiss-Prot
Match: CH601_VIBVU (60 kDa chaperonin 1 OS=Vibrio vulnificus GN=groL1 PE=3 SV=2)

HSP 1 Score: 58.5362 bits (140), Expect = 1.010e-11
Identity = 42/139 (30.22%), Postives = 71/139 (51.08%), Query Frame = 2
Query:  215 GADDVIQRPMLSELITNKDLNV-----IEESFLASGARFVKEALNPICNPDEHGFKYWGVMSSAVAYRLLLAVKAKLDPKDIDVGLRLAVDAVAEILRCRAQ-ASTFEEISQVGTAAANGNKIIGELAAMACQRVGEHG 613
            G + V+ +   +  IT   ++V     +E+ F   GA+ VK+  +   +    G     V++ A+    L AV A ++P D+  G+  AV A  E L+  ++  ST  EI QVGT +AN +  +G++ A A ++VG  G
Sbjct:   35 GRNVVLDKSFGAPTITKDGVSVAREIELEDKFQNMGAQMVKQVASQANDVAGDGTTTATVLAQAIVNEGLKAVAAGMNPMDLKRGIDKAVAAAVEELKALSKDCSTSTEIEQVGTISANSDSSVGKIIAEAMEKVGRDG 173          

HSP 2 Score: 32.7278 bits (73), Expect = 1.010e-11
Identity = 25/57 (43.86%), Postives = 35/57 (61.40%), Query Frame = 3
Query:  693 VSSYF-TNQKAKDCVLENPFFLILENMIVSQNIVE-----QAIARADSRPLLIGGED 845
            +S YF  NQ++    LE+PF L+++  I   NI E     +A+A+A SRPLLI  ED
Sbjct:  200 LSPYFINNQESGSVELESPFILLVDKKI--SNIRELLPALEAVAKA-SRPLLIIAED 253          
BLAST of DY271306 vs. ExPASy Swiss-Prot
Match: CH60_VIBHB (60 kDa chaperonin OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=groL PE=3 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 1.311e-11
Identity = 41/152 (26.97%), Postives = 73/152 (48.03%), Query Frame = 2
Query:  215 GADDVIQRPMLSELITNKDLNV-----IEESFLASGARFVKEALNPICNPDEHGFKYWGVMSSAVAYRLLLAVKAKLDPKDIDVGLRLAVDAVAEILR-CRAQASTFEEISQVGTAAANGNKIIGELAAMACQRVGEHGHYIIRDNGKSKSE 652
            G + V+ +   +  IT   ++V     +E+ F   GA+ VKE  +   +    G     V++ A+    L AV A ++P D+  G+  AV A  E L+    + +  + I+QVGT +AN +  +G + A A ++VG  G   + +    + E
Sbjct:   35 GRNVVLDKSFGAPTITKDGVSVAREIELEDKFQNMGAQMVKEVASKANDAAGDGTTTATVLAQAIVNEGLKAVAAGMNPMDLKRGIDKAVIAAVEQLKELSVECNDTKAIAQVGTISANSDSSVGNIIAEAMEKVGRDGVITVEEGQALQDE 186          

HSP 2 Score: 35.8094 bits (81), Expect = 1.311e-11
Identity = 26/57 (45.61%), Postives = 35/57 (61.40%), Query Frame = 3
Query:  693 VSSYF-TNQKAKDCVLENPFFLILENMIVSQNIVE-----QAIARADSRPLLIGGED 845
            +S YF  NQ+A    LENPF L+++  +   NI E     +A+A+A SRPLLI  ED
Sbjct:  200 LSPYFINNQEAGSVELENPFILLIDKKV--SNIRELLPALEAVAKA-SRPLLIIAED 253          
BLAST of DY271306 vs. ExPASy Swiss-Prot
Match: CH601_VIBHA (60 kDa chaperonin 1 OS=Vibrio harveyi GN=groL1 PE=3 SV=1)

HSP 1 Score: 54.6842 bits (130), Expect = 2.210e-11
Identity = 41/152 (26.97%), Postives = 73/152 (48.03%), Query Frame = 2
Query:  215 GADDVIQRPMLSELITNKDLNV-----IEESFLASGARFVKEALNPICNPDEHGFKYWGVMSSAVAYRLLLAVKAKLDPKDIDVGLRLAV-DAVAEILRCRAQASTFEEISQVGTAAANGNKIIGELAAMACQRVGEHGHYIIRDNGKSKSE 652
            G + V+ +   +  IT   ++V     +E+ F   GA+ VKE  +   +    G     V++ A+    L AV A ++P D+  G+  AV  AV +  R   + +  + I+QVGT +AN +  +G + A A ++VG  G   + +    + E
Sbjct:   35 GRNVVLDKSFGAPTITKDGVSVAREIELEDKFQNMGAQMVKEVASKANDAAGDGTTTATVLAQAIVNEGLKAVAAGMNPMDLKRGIDKAVIAAVEQPKRASVECTDTKAIAQVGTISANSDSSVGNIIAEAMEKVGRDGVITVEEGQALQDE 186          

HSP 2 Score: 35.4242 bits (80), Expect = 2.210e-11
Identity = 26/57 (45.61%), Postives = 35/57 (61.40%), Query Frame = 3
Query:  693 VSSYF-TNQKAKDCVLENPFFLILENMIVSQNIVE-----QAIARADSRPLLIGGED 845
            +S YF  NQ+A    LENPF L+++  +   NI E     +A+A+A SRPLLI  ED
Sbjct:  200 LSPYFINNQEAGSVDLENPFILLIDKKV--SNIRELLPALEAVAKA-SRPLLIIAED 253          
BLAST of DY271306 vs. ExPASy Swiss-Prot
Match: CH602_VIBVY (60 kDa chaperonin 2 OS=Vibrio vulnificus (strain YJ016) GN=groL2 PE=3 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 2.871e-11
Identity = 47/155 (30.32%), Postives = 79/155 (50.97%), Query Frame = 2
Query:  203 DNNYGADDVIQRPM-LSELITNKDLNVIEESFLASGARFVKEALNPICNPDEHGFKYWGVMSSAVAYRLLLAVKAKLDPKDIDVGLRLAVDAVAEILRCRAQ-ASTFEEISQVGTAAANGNKIIGELAAMACQRVGEHGHYIIRDNGKSKSESRV 661
            D +YGA  + +  + +++ I  KD       F   GA+ VK+  +   +    G     V++ A+    L AV A ++P D+  G+  AVD+  E LR  AQ  S  E I+QVG+ +AN ++ IG++ A A ++VG +G   + +     +E  V
Sbjct:   41 DKSYGAPSITKDGVSVAKAIELKD------KFENMGAQMVKQVASKANDEAGDGTTTATVLAQALINEGLKAVAAGMNPMDLKRGIDKAVDSAVEKLRAMAQPCSDKESITQVGSISANSDRAIGDIIAEAMEKVGRNGVITVEEGQGLSNELSV 189          

HSP 2 Score: 28.1054 bits (61), Expect = 2.871e-11
Identity = 21/55 (38.18%), Postives = 33/55 (60.00%), Query Frame = 3
Query:  693 VSSYF-TNQKAKDCVLENPFFLILENMIVSQN---IVEQAIARADSRPLLIGGED 845
            +S YF TNQ +    L+NP+ L+++  + S      V +++A+A SR LLI  ED
Sbjct:  200 LSPYFITNQDSGAVELDNPYILLVDKKVSSIRELLPVLESVAKA-SRSLLIIAED 253          
BLAST of DY271306 vs. ExPASy Swiss-Prot
Match: CH602_VIBVU (60 kDa chaperonin 2 OS=Vibrio vulnificus GN=groL2 PE=3 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 2.871e-11
Identity = 47/155 (30.32%), Postives = 79/155 (50.97%), Query Frame = 2
Query:  203 DNNYGADDVIQRPM-LSELITNKDLNVIEESFLASGARFVKEALNPICNPDEHGFKYWGVMSSAVAYRLLLAVKAKLDPKDIDVGLRLAVDAVAEILRCRAQ-ASTFEEISQVGTAAANGNKIIGELAAMACQRVGEHGHYIIRDNGKSKSESRV 661
            D +YGA  + +  + +++ I  KD       F   GA+ VK+  +   +    G     V++ A+    L AV A ++P D+  G+  AVD+  E LR  AQ  S  E I+QVG+ +AN ++ IG++ A A ++VG +G   + +     +E  V
Sbjct:   41 DKSYGAPSITKDGVSVAKAIELKD------KFENMGAQMVKQVASKANDEAGDGTTTATVLAQALINEGLKAVAAGMNPMDLKRGIDKAVDSAVEKLRAMAQPCSDKESITQVGSISANSDRAIGDIIAEAMEKVGRNGVITVEEGQGLSNELSV 189          

HSP 2 Score: 28.1054 bits (61), Expect = 2.871e-11
Identity = 21/55 (38.18%), Postives = 33/55 (60.00%), Query Frame = 3
Query:  693 VSSYF-TNQKAKDCVLENPFFLILENMIVSQN---IVEQAIARADSRPLLIGGED 845
            +S YF TNQ +    L+NP+ L+++  + S      V +++A+A SR LLI  ED
Sbjct:  200 LSPYFITNQDSGAVELDNPYILLVDKKVSSIRELLPVLESVAKA-SRSLLIIAED 253          
BLAST of DY271306 vs. ExPASy Swiss-Prot
Match: CH60_AZOSE (60 kDa chaperonin OS=Azoarcus sp. (strain EbN1) GN=groL PE=3 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 3.723e-11
Identity = 45/149 (30.20%), Postives = 78/149 (52.35%), Query Frame = 2
Query:  215 GADDVIQRPMLSELITNKDLNVIEE-----SFLASGARFVKEALNPICNPDEHGFKYWGVMSSAVAYRLLLAVKAKLDPKDIDVGLRLAVDAVAEILRCRAQ-ASTFEEISQVGTAAANGNKIIGELAAMACQRVGEHGHYIIRDNGKS 643
            G + V++R   +  +T   ++V +E      F   GA+ VKE  +   +    G     V++ ++    +  V A ++P D+  G+  AV AV E L+  ++  ST +EI+QVG+ +AN +  IGE+ A +  +VG+ G   + D GKS
Sbjct:   35 GRNVVLERSFGAPTVTKDGVSVAKEIELKDKFENMGAQMVKEVASKTSDIAGDGTTTATVLAQSIVREGMKFVAAGMNPMDLKRGIDKAVIAVTEELKKLSKPCSTNKEIAQVGSISANSDADIGEIIAKSMDKVGKEGVITVED-GKS 182          

HSP 2 Score: 31.5722 bits (70), Expect = 3.723e-11
Identity = 24/57 (42.11%), Postives = 31/57 (54.39%), Query Frame = 3
Query:  693 VSSYFTNQKAKD-CVLENPFFLILENMIVSQNI-----VEQAIARADSRPLLIGGED 845
            +S YF N   K   +LENPF L+ +  I   NI     V + +A+A  RPLLI  ED
Sbjct:  200 LSPYFINNPDKQVAILENPFILLFDKKI--SNIRDLLPVLEQVAKA-GRPLLIVAED 253          
The following BLAST results are available for this feature:
BLAST of DY271306 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
CH62_MAIZE2.559e-1830.36Chaperonin CPN60-2, mitochondrial OS=Zea mays GN=C... [more]
CH61_CUCMA4.324e-1228.83Chaperonin CPN60-1, mitochondrial OS=Cucurbita max... [more]
CH601_VIBPA5.993e-1227.6360 kDa chaperonin 1 OS=Vibrio parahaemolyticus GN=... [more]
CH601_VIBVY1.010e-1130.2260 kDa chaperonin 1 OS=Vibrio vulnificus (strain Y... [more]
CH601_VIBVU1.010e-1130.2260 kDa chaperonin 1 OS=Vibrio vulnificus GN=groL1 ... [more]
CH60_VIBHB1.311e-1126.9760 kDa chaperonin OS=Vibrio harveyi (strain ATCC B... [more]
CH601_VIBHA2.210e-1126.9760 kDa chaperonin 1 OS=Vibrio harveyi GN=groL1 PE=... [more]
CH602_VIBVY2.871e-1130.3260 kDa chaperonin 2 OS=Vibrio vulnificus (strain Y... [more]
CH602_VIBVU2.871e-1130.3260 kDa chaperonin 2 OS=Vibrio vulnificus GN=groL2 ... [more]
CH60_AZOSE3.723e-1130.2060 kDa chaperonin OS=Azoarcus sp. (strain EbN1) GN... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YI14FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271306 ID=DY271306; Name=DY271306; organism=Citrus clementina; type=EST; length=955bp
TCTCAGTTTATAATCTCTATTCATCTATCGTCAAAAATAAATTAATACGT
AAGAGAAAAAAAAATTCAGCAAACTCAACTCTTTTATTCTCTTTGACATC
CACGTAGTTATGTTACGGTTAGCTTCTAGGATCGCTTCCAACGTCAGGTT
GCCTAATAACAACAGATTAAGTTGGAGAAGAAACTATGCTCATGCTGGCA
AAGATAATAACTATGGCGCTGATGATGTTATCCAGAGGCCCATGTTGAGT
GAATTGATAACTAATAAGGATCTCAATGTTATTGAAGAAAGTTTTCTGGC
TAGTGGTGCAAGGTTTGTGAAGGAAGCTCTAAACCCTATATGCAATCCAG
ATGAACATGGATTTAAATATTGGGGTGTCATGAGTTCAGCTGTAGCTTAT
AGATTACTCTTAGCAGTGAAAGCTAAATTGGATCCCAAGGATATAGATGT
GGGTCTTCGTTTGGCTGTTGATGCAGTTGCCGAAATCTTACGCTGCAGAG
CACAGGCCAGCACATTTGAAGAAATTTCCCAGGTTGGAACCGCAGCAGCA
AATGGGAACAAAATAATTGGTGAGCTTGCTGCCATGGCTTGTCAGAGAGT
TGGAGAACATGGTCATTATATCATCAGGGATAATGGAAAATCAAAGAGTG
AAAGTAGAGTTTTTTAATTTTATGAAACTAAAATGGCGTCCCGTGTCCTC
TTACTTCACCAATCAAAAGGCTAAAGATTGTGTTTTGGAAAATCCTTTCT
TTTTAATCCTTGAGAACATGATTGTGAGCCAGAATATTGTTGAGCAAGCA
ATTGCACGGGCGGATTCCAGACCTTTATTGATTGGTGGTGAGGATGGTTG
AAAAAAACTGAAAGGTTCCCTTATTCGGGGCAAAACTGGTCTCCAAAACA
AGGTTTCTATGGCCAAACCCAGGAAAACCAACATGAAAAAAAAACAAAGG
CCTCA
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