DY271309

Overview
NameDY271309
Unique NameDY271309
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length941
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271309 vs. ExPASy Swiss-Prot
Match: LBD41_ARATH (LOB domain-containing protein 41 OS=Arabidopsis thaliana GN=LBD41 PE=2 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 1.338e-58
Identity = 126/235 (53.62%), Postives = 155/235 (65.96%), Query Frame = 2
Query:   53 MRVSCNGCRVLRKGCGENCSIRPCLQWIKSPQCQANATLFLAKFYGRAGLVNLINAGPQDLRPAIFKSLLYEACGRIVNPIYGSVGLMWSGRWHLCQAAVEAVFRGEPVTPLSSESA-------LQAGDIRHVSKDEXXXXXXXGSDKLHKVKSRRFKR-SAPKPRSKPERAADAKVVEPLLDNSGGESTSCDPELTQRDSGESDSVSVETVEATLAKTDGGADGS-DVDLELSL 730
            MR+SCNGCRVLRKGC E+CSIRPCL WIKSP+ QANAT+FLAKFYGRAGL+NLINAGP  LRP IF+SLL+EACGRIVNPIYGSVGL+WSG W LCQ AVEAV +GEPV  +++++A       L+  DIRH+SKD+       GS  L   K+RR KR S    +++ E  +D        + S   S S   E+     GES   S   V   LA +     GS ++ L+L+L
Sbjct:    1 MRMSCNGCRVLRKGCSEDCSIRPCLAWIKSPEAQANATVFLAKFYGRAGLMNLINAGPNHLRPGIFRSLLHEACGRIVNPIYGSVGLLWSGNWQLCQDAVEAVMKGEPVKEIATDAATIGQGPPLKIYDIRHISKDDNSAAAATGSTDLKLAKTRRAKRVSTVAIQAESEGKSD--------EASHDSSLSHQSEIVAAHEGESKE-SESNVSEVLAFSPPAVKGSGEIKLDLTL 226          
BLAST of DY271309 vs. ExPASy Swiss-Prot
Match: LBD40_ARATH (LOB domain-containing protein 40 OS=Arabidopsis thaliana GN=LBD40 PE=2 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 4.758e-56
Identity = 110/182 (60.44%), Postives = 129/182 (70.88%), Query Frame = 2
Query:   53 MRVSCNGCRVLRKGCGENCSIRPCLQWIKSPQCQANATLFLAKFYGRAGLVNLINAGPQDLRPAIFKSLLYEACGRIVNPIYGSVGLMWSGRWHLCQAAVEAVFRGEPVTPLSSESAL---------QAGDIRHV-SKDEXXXXXXXGSDKLHKVKSRRFKRSAPKPRSKPERAADAKVVEP 568
            MR+SCNGCRVLRKGC ENCSIRPCLQWIKS + QANAT+FLAKFYGRAGL+NL+N GP  LRPAIF+SLLYEACGRIVNPIYGSVGL+WSG WHLCQAAVEAV RG PVTP++ ++A+         +  DIRHV S+DE       G+ K  +   R     +      P  + +    EP
Sbjct:    1 MRMSCNGCRVLRKGCSENCSIRPCLQWIKSAESQANATVFLAKFYGRAGLMNLLNTGPDHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGNWHLCQAAVEAVMRGSPVTPIACDAAVTGQAPPFNNKLCDIRHVSSRDENVKRRSRGACKEER-NVRSLSHESSLSHESPVSSEETTTEEP 181          
BLAST of DY271309 vs. ExPASy Swiss-Prot
Match: LBD42_ARATH (LOB domain-containing protein 42 OS=Arabidopsis thaliana GN=LBD42 PE=2 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 3.901e-50
Identity = 98/138 (71.01%), Postives = 110/138 (79.71%), Query Frame = 2
Query:   53 MRVSCNGCRVLRKGCGENCSIRPCLQWIKSPQCQANATLFLAKFYGRAGLVNLINAGPQDLRPAIFKSLLYEACGRIVNPIYGSVGLMWSGRWHLCQAAVEAVFRGEPV--TPLSSESAL-------QAGDIRHVSKD 439
            MR+SCNGCRVLRKGC ++C+IRPCLQWIKS   QANATLFLAKFYGRAGL+NLI +GP  LRPAIF+SLLYEACGRIVNP+ GSVGLMWSG W  CQAAV+AV  G P+  TPL S SA        +  DIRHV+KD
Sbjct:    1 MRISCNGCRVLRKGCNQDCTIRPCLQWIKSADSQANATLFLAKFYGRAGLLNLIESGPDHLRPAIFRSLLYEACGRIVNPVDGSVGLMWSGNWAQCQAAVDAVLNGLPITHTPLPSASASHQIIPPHRTYDIRHVAKD 138          
BLAST of DY271309 vs. ExPASy Swiss-Prot
Match: LBD38_ARATH (LOB domain-containing protein 38 OS=Arabidopsis thaliana GN=LBD38 PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.802e-40
Identity = 70/110 (63.64%), Postives = 93/110 (84.55%), Query Frame = 2
Query:   59 VSCNGCRVLRKGCGENCSIRPCLQWIKSPQCQANATLFLAKFYGRAGLVNLINAGPQDLRPAIFKSLLYEACGRIVNPIYGSVGLMWSGRWHLCQAAVEAVFRGEPVTPL 388
            +SCNGCRVLRKGC ENC +RPC+QWI+SP+ Q +AT+F+AKF+GRAGL++ I+A P+   PA+F+SLLYEACGR VNP+ G+VGL+W+G W++CQAAVE V RG  + P+
Sbjct:    1 MSCNGCRVLRKGCSENCILRPCIQWIESPEAQGHATVFVAKFFGRAGLMSFISAVPESQCPALFQSLLYEACGRTVNPVNGAVGLLWTGNWNVCQAAVETVLRGGSLKPI 110          
BLAST of DY271309 vs. ExPASy Swiss-Prot
Match: LBD37_ARATH (LOB domain-containing protein 37 OS=Arabidopsis thaliana GN=LBD37 PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 3.098e-39
Identity = 67/110 (60.91%), Postives = 91/110 (82.73%), Query Frame = 2
Query:   59 VSCNGCRVLRKGCGENCSIRPCLQWIKSPQCQANATLFLAKFYGRAGLVNLINAGPQDLRPAIFKSLLYEACGRIVNPIYGSVGLMWSGRWHLCQAAVEAVFRGEPVTPL 388
            +SCNGCRVLRKGC ENC +RPC+QWI++   Q +AT+F+AKF+GRAGL++ I+A P   RPA+F+SLLYEACGR VNP+ G++G++W+G W++CQAAVE V RG  + P+
Sbjct:    1 MSCNGCRVLRKGCSENCILRPCIQWIETADAQGHATVFVAKFFGRAGLMSFISAVPDSQRPALFQSLLYEACGRTVNPVNGAIGMLWTGNWNICQAAVETVLRGGSLRPI 110          
BLAST of DY271309 vs. ExPASy Swiss-Prot
Match: LBD39_ARATH (LOB domain-containing protein 39 OS=Arabidopsis thaliana GN=LBD39 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.538e-38
Identity = 68/111 (61.26%), Postives = 92/111 (82.88%), Query Frame = 2
Query:   59 VSCNGCRVLRKGCGENCSIRPCLQWIKSPQCQANATLFLAKFYGRAGLVNLINAGPQDLRPAIFKSLLYEACGRIVNPIYGSVGLMWSGRWHLCQAAVEAVFRGEPVTPLS 391
            +SCNGCRVLRKGC E C +RPCLQWI+S + Q +AT+F+AKF+GRAGL++ I++ P+  RPA+F+SLL+EACGR VNP+ G+VG++W+  WH+CQAAVE V RG  + P+S
Sbjct:    1 MSCNGCRVLRKGCSETCILRPCLQWIESAESQGHATVFVAKFFGRAGLMSFISSVPELQRPALFQSLLFEACGRTVNPVNGAVGMLWTRNWHVCQAAVETVLRGGTLRPIS 111          
The following BLAST results are available for this feature:
BLAST of DY271309 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
LBD41_ARATH1.338e-5853.62LOB domain-containing protein 41 OS=Arabidopsis th... [more]
LBD40_ARATH4.758e-5660.44LOB domain-containing protein 40 OS=Arabidopsis th... [more]
LBD42_ARATH3.901e-5071.01LOB domain-containing protein 42 OS=Arabidopsis th... [more]
LBD38_ARATH2.802e-4063.64LOB domain-containing protein 38 OS=Arabidopsis th... [more]
LBD37_ARATH3.098e-3960.91LOB domain-containing protein 37 OS=Arabidopsis th... [more]
LBD39_ARATH1.538e-3861.26LOB domain-containing protein 39 OS=Arabidopsis th... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP9YI19FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271309 ID=DY271309; Name=DY271309; organism=Citrus clementina; type=EST; length=941bp
CATTTTCTCTCAGCTTCCTCTCAACTTTCTTGCTTCCCAAACATAACCAA
CCATGCGTGTGAGCTGCAACGGATGCCGCGTCCTGCGCAAAGGCTGCGGC
GAAAACTGCTCCATCAGACCTTGCCTTCAGTGGATTAAAAGCCCCCAGTG
TCAGGCCAACGCCACTCTTTTTCTCGCCAAATTCTACGGCCGCGCCGGCC
TCGTCAATCTCATCAATGCCGGTCCCCAAGACCTCCGTCCCGCTATTTTC
AAATCGCTGCTCTACGAGGCCTGCGGCCGAATCGTGAACCCGATCTACGG
TTCCGTCGGGCTGATGTGGTCCGGACGCTGGCACCTCTGCCAAGCCGCTG
TTGAAGCTGTTTTCAGAGGCGAGCCGGTCACTCCTCTTTCGTCTGAGTCT
GCTCTTCAAGCCGGTGATATCCGCCACGTGTCCAAAGATGAGAGCTCCGC
TGCGGCGGCTGCAGGTTCTGATAAGCTTCATAAGGTCAAGTCTAGGAGAT
TCAAGCGCTCGGCTCCTAAGCCCAGGTCGAAGCCGGAGCGGGCTGCTGAT
GCCAAGGTTGTTGAGCCTCTGTTGGATAACTCTGGTGGTGAATCCACGAG
TTGCGACCCGGAGCTGACTCAGCGTGACAGCGGAGAAAGTGACAGCGTGT
CAGTTGAGACCGTAGAGGCTACGCTAGCGAAGACTGATGGTGGGGCCGAT
GGGAGTGACGTGGATTTAGAATTATCTTTGGGCTTCGGCATTTAAACCCC
GGTAAAATTTTAAGTTGATCTGTTTCTGATGATGCCACGTGTGGCGGTGA
TTGTTTAATAGCAATCTGGGGCGGCCCAATTCCATGTATTAACCAGTTTT
GAAGGGCTGGAAGAAAAGGGTTTAAGTTCATTCCAACATTTTTTTATTGT
TCCAGGGCTGGGCCGCGGAAAGTGTACCTTTGAAAGGTACC
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