DY271313

Overview
NameDY271313
Unique NameDY271313
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length944
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271313 vs. ExPASy Swiss-Prot
Match: HSP17_ARATH (17.4 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.4A PE=1 SV=2)

HSP 1 Score: 211.075 bits (536), Expect = 7.635e-54
Identity = 100/140 (71.43%), Postives = 117/140 (83.57%), Query Frame = 2
Query:   32 MSLIPSIFGGRRTNVFDPVSLDVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 451
            MSL+PS FGGRRTNVFDP SLDVWDPF+GFL+  LTNAP  A++ + F NA++DW+ETP+AHVFKAD+PGL+          G ILQISGERS E EEK+D WHRVERSSGKF+RRFRLP+NAKVE+VKASMENGVL+VT
Sbjct:    1 MSLVPSFFGGRRTNVFDPFSLDVWDPFEGFLTPGLTNAP--AKDVAAFTNAKVDWRETPEAHVFKADVPGLKKEEVKVEVEDGNILQISGERSSENEEKSDTWHRVERSSGKFMRRFRLPENAKVEEVKASMENGVLSVT 138          
BLAST of DY271313 vs. ExPASy Swiss-Prot
Match: HS181_ARATH (18.1 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 1.102e-52
Identity = 102/141 (72.34%), Postives = 118/141 (83.69%), Query Frame = 2
Query:   32 MSLIPSIFGGRRTNVFDPVSLDVWDPFDGFL--SSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTV 448
            MSLIPSIFGGRR+NVFDP S D+WDPF+GF   SSAL NA S+AR+ + F NAR+DWKETP+AHVFKADLPGL+            +LQISGERSKE EEKNDKWHRVER+SGKF+RRFRLP+NAK+E+VKA+MENGVLTV
Sbjct:    1 MSLIPSIFGGRRSNVFDPFSQDLWDPFEGFFTPSSALANA-STARDVAAFTNARVDWKETPEAHVFKADLPGLKKEEVKVEVEDKNVLQISGERSKENEEKNDKWHRVERASGKFMRRFRLPENAKMEEVKATMENGVLTV 140          
BLAST of DY271313 vs. ExPASy Swiss-Prot
Match: HS17C_ARATH (17.6 kDa class I heat shock protein 3 OS=Arabidopsis thaliana GN=HSP17.6C PE=2 SV=2)

HSP 1 Score: 207.223 bits (526), Expect = 1.102e-52
Identity = 103/141 (73.05%), Postives = 117/141 (82.98%), Query Frame = 2
Query:   32 MSLIPSIFGGRRTNVFDPVSLDVWDPFDGFLS-SALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 451
            MSLIPSIFGGRRTNVFDP SLDV+DPF+GFL+ S L NAP  A + + F NA++DW+ETP+AHVFKADLPGLR          G ILQISGERS E EEKNDKWHRVERSSGKF RRFRLP+NAK+E++KASMENGVL+VT
Sbjct:    1 MSLIPSIFGGRRTNVFDPFSLDVFDPFEGFLTPSGLANAP--AMDVAAFTNAKVDWRETPEAHVFKADLPGLRKEEVKVEVEDGNILQISGERSNENEEKNDKWHRVERSSGKFTRRFRLPENAKMEEIKASMENGVLSVT 139          
BLAST of DY271313 vs. ExPASy Swiss-Prot
Match: HSP11_DAUCA (17.8 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 3.002e-50
Identity = 96/140 (68.57%), Postives = 112/140 (80.00%), Query Frame = 2
Query:   32 MSLIPSIFGGRRTNVFDPVSLDVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 451
            MS+IPS FGGRR+NVFDP SLDVWDPF  F     ++A    +ET+ F N  IDWKETPQAHVFKADLPGL+          G++LQISGER+KE+EEKNDKWHRVERSSGKFLRRFRLP+NAKV++VKA+M NGV+TVT
Sbjct:    1 MSIIPSFFGGRRSNVFDPFSLDVWDPFKDF-PLVTSSASEFGKETAAFVNTHIDWKETPQAHVFKADLPGLKKEEVKVELEEGKVLQISGERNKEKEEKNDKWHRVERSSGKFLRRFRLPENAKVDEVKAAMANGVVTVT 139          
BLAST of DY271313 vs. ExPASy Swiss-Prot
Match: HSP16_SOYBN (18.5 kDa class I heat shock protein OS=Glycine max GN=HSP18.5-C PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 3.319e-49
Identity = 98/145 (67.59%), Postives = 113/145 (77.93%), Query Frame = 2
Query:   32 MSLIPSIFGGRRTNVFDPVSLDVWDPFDGF-----LSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 451
            MSLIP+ FGGRR NVFDP SLDVWDPF  F     LSSA  + P  +RE S F + R+DWKETP+AHVFKAD+PGL+           ++LQISGER+ E+E+KND WHRVERSSGKF+RRFRLP+NAKVEQVKASMENGVLTVT
Sbjct:    1 MSLIPNFFGGRRNNVFDPFSLDVWDPFKDFPFPNTLSSA--SFPEFSRENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKVQIEDDKVLQISGERNVEKEDKNDTWHRVERSSGKFMRRFRLPENAKVEQVKASMENGVLTVT 143          
BLAST of DY271313 vs. ExPASy Swiss-Prot
Match: HSP12_MEDSA (18.2 kDa class I heat shock protein OS=Medicago sativa GN=HSP18.2 PE=2 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 5.662e-49
Identity = 93/140 (66.43%), Postives = 111/140 (79.29%), Query Frame = 2
Query:   32 MSLIPSIFGGRRTNVFDPVSLDVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 451
            MSLIPS FGGRR+NVFDP SLDVWDPF  F  +    + S  RE S F + R+DWKETP+AHVFKADLPG++           R+LQISGERS E+E+KND+WHR+ERSSGKF+RRFRLP+NAK++QVKA+MENGVLTVT
Sbjct:    1 MSLIPSFFGGRRSNVFDPFSLDVWDPFKDFPFNNSALSASFPRENSAFVSTRVDWKETPEAHVFKADLPGMKKEEVKVEIEDDRVLQISGERSVEKEDKNDQWHRLERSSGKFMRRFRLPENAKMDQVKAAMENGVLTVT 140          
BLAST of DY271313 vs. ExPASy Swiss-Prot
Match: HSP13_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-M PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 2.810e-48
Identity = 96/141 (68.09%), Postives = 111/141 (78.72%), Query Frame = 2
Query:   32 MSLIPSIFGGRRTNVFDPVSLDVWDPFDGFLSSALTNAPSS-ARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 451
            MSLIPSIFGGRR+NVFDP SLDVWDPF  F      + P+S + E S F N R+DWKETP+AHVF+AD+PGL+           R+LQISGER+ E+E+KND WHRVERSSG F+RRFRLP+NAKVEQVKASMENGVLTVT
Sbjct:    1 MSLIPSIFGGRRSNVFDPFSLDVWDPFKDF------HFPTSLSAENSAFVNTRVDWKETPEAHVFEADIPGLKKEEVKVQIEDDRVLQISGERNLEKEDKNDTWHRVERSSGNFMRRFRLPENAKVEQVKASMENGVLTVT 135          
BLAST of DY271313 vs. ExPASy Swiss-Prot
Match: HSP11_PEA (18.1 kDa class I heat shock protein OS=Pisum sativum GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 2.810e-48
Identity = 94/140 (67.14%), Postives = 109/140 (77.86%), Query Frame = 2
Query:   32 MSLIPSIFGGRRTNVFDPVSLDVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 451
            MSLIPS F GRR+NVFDP SLDVWDP   F  S  + + S  RE   F + R+DWKETP+AHVFKADLPGL+           R+LQISGERS E+E+KND+WHRVERSSGKFLRRFRLP+NAK+++VKASMENGVLTVT
Sbjct:    1 MSLIPSFFSGRRSNVFDPFSLDVWDPLKDFPFSNSSPSASFPRENPAFVSTRVDWKETPEAHVFKADLPGLKKEEVKVEVEDDRVLQISGERSVEKEDKNDEWHRVERSSGKFLRRFRLPENAKMDKVKASMENGVLTVT 140          
BLAST of DY271313 vs. ExPASy Swiss-Prot
Match: HSP11_SOYBN (17.3 kDa class I heat shock protein OS=Glycine max GN=HSP17.3-B PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 2.379e-47
Identity = 95/141 (67.38%), Postives = 110/141 (78.01%), Query Frame = 2
Query:   32 MSLIPSIFGGRRTNVFDPVSLDVWDPFDGFLSSALTNAPSS-ARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 451
            MSLIPS FGGRR++VFDP SLDVWDPF  F        PSS + E S F + R+DWKETP+AHVFKAD+PGL+          GR+LQISGER+ E+E+KND WHRVERSSGK +RRFRLP+NAKV+QVKASMENGVLTVT
Sbjct:    1 MSLIPSFFGGRRSSVFDPFSLDVWDPFKDF------PFPSSLSAENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKLEIQDGRVLQISGERNVEKEDKNDTWHRVERSSGKLVRRFRLPENAKVDQVKASMENGVLTVT 135          
BLAST of DY271313 vs. ExPASy Swiss-Prot
Match: HSP12_DAUCA (18.0 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 4.058e-47
Identity = 91/141 (64.54%), Postives = 110/141 (78.01%), Query Frame = 2
Query:   32 MSLIPSIFGGRRTNVFDPVSLDVWDPFDGF-LSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 451
            MS+IPS FG RR+NV +P SLD+WDPF  + L ++   +    +ET+ FAN  IDWKETPQAHVFKADLPGL+          G++LQISGER+KE+EEKN+KWHRVE SSGKFLRRFRLP+NA V++VKA MENGVLTVT
Sbjct:    1 MSIIPSFFGSRRSNVLNPFSLDIWDPFQDYPLITSSGTSSEFGKETAAFANTHIDWKETPQAHVFKADLPGLKKEEVKVEVEEGKVLQISGERNKEKEEKNNKWHRVEFSSGKFLRRFRLPENANVDEVKAGMENGVLTVT 141          
The following BLAST results are available for this feature:
BLAST of DY271313 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
HSP17_ARATH7.635e-5471.4317.4 kDa class I heat shock protein OS=Arabidopsis... [more]
HS181_ARATH1.102e-5272.3418.1 kDa class I heat shock protein OS=Arabidopsis... [more]
HS17C_ARATH1.102e-5273.0517.6 kDa class I heat shock protein 3 OS=Arabidops... [more]
HSP11_DAUCA3.002e-5068.5717.8 kDa class I heat shock protein OS=Daucus caro... [more]
HSP16_SOYBN3.319e-4967.5918.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP12_MEDSA5.662e-4966.4318.2 kDa class I heat shock protein OS=Medicago sa... [more]
HSP13_SOYBN2.810e-4868.0917.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP11_PEA2.810e-4867.1418.1 kDa class I heat shock protein OS=Pisum sativ... [more]
HSP11_SOYBN2.379e-4767.3817.3 kDa class I heat shock protein OS=Glycine max... [more]
HSP12_DAUCA4.058e-4764.5418.0 kDa class I heat shock protein OS=Daucus caro... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YI23FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271313 ID=DY271313; Name=DY271313; organism=Citrus clementina; type=EST; length=944bp
GAGCATTTATTTAGCGTCCCAGTTTGCCATAATGTCACTCATTCCAAGCA
TCTTCGGTGGCCGAAGAACCAACGTGTTCGATCCAGTTTCATTAGATGTA
TGGGATCCTTTCGACGGGTTCTTGTCCTCTGCCCTTACCAACGCGCCGTC
TTCGGCTAGGGAAACATCCCAATTCGCCAATGCAAGAATTGACTGGAAAG
AGACTCCTCAGGCTCACGTATTCAAAGCTGATCTTCCAGGGCTGAGGAAA
GAAGAAGTAAAAGTTGAGGTTGAAGAGGGCAGGATTCTGCAGATAAGCGG
AGAGAGGAGCAAGGAGCAGGAAGAGAAGAATGACAAGTGGCATCGCGTCG
AGAGGAGCAGTGGCAAGTTCCTGAGGAGGTTCAGGTTGCCCGACAATGCT
AAGGTGGAACAGGTTAAGGCCAGCATGGAGAATGGTGTGCTCACAGTCAC
CCGTTCCTAAACAGGAGGAGAAGAAACCTGAAGTTAAGGCTATTGAGATC
TCTGGCTAAGTGATAACTGTAAATGTTTTCAAGATAGTGTCTTTGGTTTG
CTAAATAAATTTGGTACGAAAGCAAAGCCCCTTGTGTGTTTGTATGTGTG
TGTGTGTTTGTTTTTCTTCCCCTTCCCCCCTGTTTAATTTAATGTGATTA
CGTTTGTGTGTATGCAAGAACTTCAGGAACCATTCCCAAGCCTGTAACCT
AATTTTTCAAATGGAAAAAACAGTGGGATCCAATAAAATTTTTTTGTAAT
GCAAAAAAAAAAAAAAAAAAACACCACCCCTCCCGGCACAAGGCGCCACT
TTAGAAAAGAGCTTCCCTAATAATTTGTTGCCAAAAAACCGGTAACTTCC
TGTCAAAAAAAAAATCTTTTTCCCATACCTACTAAATCCCTCTTAATATT
ATTAAATATCATTGCATTCCCTCCCTCCTTCTCCCACTCCCCAT
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