DY271316

Overview
NameDY271316
Unique NameDY271316
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length973
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271316 vs. ExPASy Swiss-Prot
Match: BH035_ARATH (Transcription factor bHLH35 OS=Arabidopsis thaliana GN=BHLH35 PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 9.782e-44
Identity = 110/230 (47.83%), Postives = 145/230 (63.04%), Query Frame = 3
Query:   87 QEYQNYWETKMFLQNEEFD---TWPLDEAFSGYYDXXXXXXXXXXXXXKNIVSERNRRKKLNERLFALRSVVPNISKMDKASIIKDAIDYIQELHEQEKRIRDEIMELES-GKSKKNFGFDFEQELPVLLRPKK-KKIDRFFDSAGSRTAPVEILELRVKTMEKRYWW*A*LVAKE---QIQWLNCVRPLNL*S*KSSPQNITAVAGRLLKTAFIEADEEEMDDLKIKIQ 752
            QE  NYWE   FLQNE+F+   +WPL+EA SG YD             KNIVSERNRR+KLN+RLFALRSVVPNI+KMDKASIIKDAI YI+ L  +EK++  EI ELES  KS  +F  DF+++L V +  KK K++D     +GS T+ +E+LEL+V  M +R    +    K     ++       LNL   K    N+T+ +G +  T FIEADEEE + L++KI+
Sbjct:    7 QELSNYWEPSSFLQNEDFEYDRSWPLEEAISGSYDSSSPDGAASSPASKNIVSERNRRQKLNQRLFALRSVVPNITKMDKASIIKDAISYIEGLQYEEKKLEAEIRELESTPKSSLSFSKDFDRDLLVPVTSKKMKQLD-----SGSSTSLIEVLELKVTFMGERTMVVSVTCNKRTDTMVKLCEVFESLNL---KILTSNLTSFSGMIFHTVFIEADEEEQEVLRLKIE 228          
BLAST of DY271316 vs. ExPASy Swiss-Prot
Match: BH027_ARATH (Transcription factor bHLH27 OS=Arabidopsis thaliana GN=BHLH27 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.565e-33
Identity = 93/227 (40.97%), Postives = 128/227 (56.39%), Query Frame = 3
Query:   75 EDYQQEYQNYWETKMFLQNEE--FDTWPLDEAFSGYYDXXXXXXXXXXXXX-KNIVSERNRRKKLNERLFALRSVVPNISKMDKASIIKDAIDYIQELHEQEKRIRDEIMELESGKS---------KKNFGFDFEQELPVLLRPKKKKIDRFFDSAGSRTAPVEILELRVKTMEKRYWW*A*LVAKEQ---IQWLNCVRPLNL*S*KSSPQNITAVAGRLLKTAFIE 710
            ED   EY+NYWET MF QN+E  FD+WP++EAFSG  +              KN+VSERNRR+KLN+RLFALRSVVPNISK+DKAS+IKD+IDY+QEL +QEK +  EI ELES  +           NF     Q+       + KK  +   S   +  P+E+LE++V  M ++        +K++   +Q    +  LNL        N ++   RL  T F++
Sbjct:    2 EDLDHEYKNYWETTMFFQNQELEFDSWPMEEAFSGSGESSSPDGAATSPASSKNVVSERNRRQKLNQRLFALRSVVPNISKLDKASVIKDSIDYMQELIDQEKTLEAEIRELESRSTLLENPVRDYDCNFAETHLQDFSDNNDMRSKKFKQMDYSTRVQHYPIEVLEMKVTWMGEKTVVVCITCSKKRETMVQLCKVLESLNL---NILTTNFSSFTSRLSTTLFLQ 225          
BLAST of DY271316 vs. ExPASy Swiss-Prot
Match: AMS_ARATH (Transcription factor ABORTED MICROSPORES OS=Arabidopsis thaliana GN=AMS PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 6.184e-14
Identity = 37/73 (50.68%), Postives = 56/73 (76.71%), Query Frame = 3
Query:  222 KNIVSERNRRKKLNERLFALRSVVPNISKMDKASIIKDAIDYIQELHEQEKRIRDEI---MELESGKSKKNFG 431
            KN+++ER RRKKLN+RL+ALRS+VP I+K+D+ASI+ DAI+Y++EL  + K ++DE+    E E G ++   G
Sbjct:  314 KNLMAERRRRKKLNDRLYALRSLVPRITKLDRASILGDAINYVKELQNEAKELQDELEENSETEDGSNRPQGG 386          
BLAST of DY271316 vs. ExPASy Swiss-Prot
Match: BH093_ARATH (Transcription factor bHLH93 OS=Arabidopsis thaliana GN=BHLH93 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.350e-13
Identity = 43/95 (45.26%), Postives = 63/95 (66.32%), Query Frame = 3
Query:  222 KNIVSERNRRKKLNERLFALRSVVPNISKMDKASIIKDAIDYIQELHEQEKRIRDEIMELESGKS---KKNFG--FDFEQELPVLLRPKKKKIDR 491
            KN+++ER RRK+LN+RL  LRS+VP ISKMD+ SI+ DAIDY++EL ++  +++DE  EL +  +    K FG   D     P++    K +IDR
Sbjct:  178 KNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDAIDYMKELLDKINKLQDEEQELGNSNNSHHSKLFGDLKDLNANEPLVRNSPKFEIDR 272          
BLAST of DY271316 vs. ExPASy Swiss-Prot
Match: AIB_ARATH (Transcription factor ABA-INDUCIBLE bHLH-TYPE OS=Arabidopsis thaliana GN=AIB PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 4.008e-13
Identity = 37/67 (55.22%), Postives = 51/67 (76.12%), Query Frame = 3
Query:  225 NIVSERNRRKKLNERLFALRSVVPNISKMDKASIIKDAIDYIQELHEQEKRIRDEIMELESGKSKKN 425
            ++ +ER RR+KLN+R +ALRSVVPNISKMDKAS++ DAI YI+EL E+ K + DE +  +   S+ N
Sbjct:  396 HVEAERQRREKLNQRFYALRSVVPNISKMDKASLLGDAISYIKELQEKVKIMEDERVGTDKSLSESN 462          
BLAST of DY271316 vs. ExPASy Swiss-Prot
Match: SCRM2_ARATH (Transcription factor SCREAM2 OS=Arabidopsis thaliana GN=SCRM2 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 5.235e-13
Identity = 40/62 (64.52%), Postives = 50/62 (80.65%), Query Frame = 3
Query:  222 KNIVSERNRRKKLNERLFALRSVVPNISKMDKASIIKDAIDYIQELHEQEKRIRDEIMELES 407
            KN+++ER RRKKLN+RL+ LRSVVP ISKMD+ASI+ DAIDY++EL +   RI D   ELES
Sbjct:  267 KNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQ---RINDLHTELES 325          
BLAST of DY271316 vs. ExPASy Swiss-Prot
Match: ICE1_ARATH (Transcription factor ICE1 OS=Arabidopsis thaliana GN=SCRM PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.837e-13
Identity = 40/62 (64.52%), Postives = 50/62 (80.65%), Query Frame = 3
Query:  222 KNIVSERNRRKKLNERLFALRSVVPNISKMDKASIIKDAIDYIQELHEQEKRIRDEIMELES 407
            KN+++ER RRKKLN+RL+ LRSVVP ISKMD+ASI+ DAIDY++EL +   RI D   ELES
Sbjct:  307 KNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQ---RINDLHNELES 365          
BLAST of DY271316 vs. ExPASy Swiss-Prot
Match: FIT_ARATH (Transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR OS=Arabidopsis thaliana GN=FIT PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.989e-12
Identity = 32/62 (51.61%), Postives = 50/62 (80.65%), Query Frame = 3
Query:  222 KNIVSERNRRKKLNERLFALRSVVPNISKMDKASIIKDAIDYIQELHEQEKRIRDEIMELES 407
            + ++SER RR ++ ++L+ALRS+VPNI+KMDKASI+ DA+ Y+QEL  Q K+++ +I  LE+
Sbjct:  131 RTLISERRRRGRMKDKLYALRSLVPNITKMDKASIVGDAVLYVQELQSQAKKLKSDIAGLEA 192          
BLAST of DY271316 vs. ExPASy Swiss-Prot
Match: BH061_ARATH (Transcription factor bHLH61 OS=Arabidopsis thaliana GN=BHLH61 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.200e-11
Identity = 32/62 (51.61%), Postives = 50/62 (80.65%), Query Frame = 3
Query:  222 KNIVSERNRRKKLNERLFALRSVVPNISKMDKASIIKDAIDYIQELHEQEKRIRDEIMELES 407
            KN+++ER RRK+LN+RL  LRS+VP I+KMD+ SI+ DAIDY++EL ++  +++++  EL S
Sbjct:  151 KNLMAERRRRKRLNDRLSLLRSIVPKITKMDRTSILGDAIDYMKELLDKINKLQEDEQELGS 212          
BLAST of DY271316 vs. ExPASy Swiss-Prot
Match: BH013_ARATH (Transcription factor bHLH13 OS=Arabidopsis thaliana GN=BHLH13 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.200e-11
Identity = 33/55 (60.00%), Postives = 44/55 (80.00%), Query Frame = 3
Query:  225 NIVSERNRRKKLNERLFALRSVVPNISKMDKASIIKDAIDYIQELHEQEKRIRDE 389
            ++ +ER RR+KLN+R +ALRSVVPNISKMDKAS++ DA+ YI ELH + K +  E
Sbjct:  434 HVEAERQRREKLNQRFYALRSVVPNISKMDKASLLGDAVSYINELHAKLKVMEAE 488          
The following BLAST results are available for this feature:
BLAST of DY271316 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
BH035_ARATH9.782e-4447.83Transcription factor bHLH35 OS=Arabidopsis thalian... [more]
BH027_ARATH1.565e-3340.97Transcription factor bHLH27 OS=Arabidopsis thalian... [more]
AMS_ARATH6.184e-1450.68Transcription factor ABORTED MICROSPORES OS=Arabid... [more]
BH093_ARATH2.350e-1345.26Transcription factor bHLH93 OS=Arabidopsis thalian... [more]
AIB_ARATH4.008e-1355.22Transcription factor ABA-INDUCIBLE bHLH-TYPE OS=Ar... [more]
SCRM2_ARATH5.235e-1364.52Transcription factor SCREAM2 OS=Arabidopsis thalia... [more]
ICE1_ARATH6.837e-1364.52Transcription factor ICE1 OS=Arabidopsis thaliana ... [more]
FIT_ARATH1.989e-1251.61Transcription factor FER-LIKE IRON DEFICIENCY-INDU... [more]
BH061_ARATH2.200e-1151.61Transcription factor bHLH61 OS=Arabidopsis thalian... [more]
BH013_ARATH2.200e-1160.00Transcription factor bHLH13 OS=Arabidopsis thalian... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YJ05FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271316 ID=DY271316; Name=DY271316; organism=Citrus clementina; type=EST; length=973bp
CTTTTATTTGATTTCTTCTCAAGAAAGAAGAATCCTTCTATTTTTTTTGT
TTTGGTGTGATGGAAAACCTCGGCGAAGACTACCAGCAAGAGTATCAAAA
TTACTGGGAAACCAAAATGTTCCTCCAAAATGAAGAATTTGACACATGGC
CATTGGACGAGGCGTTTTCGGGGTACTATGACTCGAGTTCTCCGGACGGG
GCGGCGTCGTCGGCGGCGTCCAAGAATATTGTCTCGGAGAGGAATAGGAG
AAAGAAGCTCAACGAAAGGCTGTTTGCTCTTAGATCAGTTGTCCCCAATA
TTAGCAAGATGGATAAAGCATCAATAATCAAAGATGCTATCGATTACATA
CAAGAGCTGCACGAGCAAGAGAAGAGGATTCGAGATGAAATAATGGAACT
CGAGTCTGGGAAATCGAAGAAGAATTTTGGGTTTGATTTCGAGCAGGAGC
TGCCTGTTTTGTTGAGACCAAAGAAGAAGAAAATTGACCGGTTCTTTGAT
TCGGCAGGATCAAGAACTGCTCCTGTTGAAATCCTTGAACTTCGGGTAAA
AACAATGGAGAAAAGATATTGGTGGTGAGCGTAACTTGTAGCAAAAGAAC
AGATACAATGGTTAAATTGTGTGAGGCCTTTGAATCTTTAAAGCTAAAAA
TCATCACCGCAAAATATCACCGCTGTTGCCGGCAGGCTTTTGAAGACAGC
CTTTATTGAGGCTGATGAAGAGGAGATGGACGATTTGAAGATTAAAATTC
AACAGCAATTCAAGCTCTCAAGGATCCATCAAGTCCCATGAGCGTCCAAT
GTCACAAGCCCCCACCAACTTCAAACCGGTGATGGGGGTGAGTTTTTGGA
AGGGCATGTTTTGATATGGCTTTATCCACCCCCCCCCCCCCAAAGCCCGG
TTTATTTTTCCCCATTTATTTGGCTAAATGAAAAAAAAGGACGTTTTCGG
CCCCCCCCCCCCCCCCCCCCTTG
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