DY271367

Overview
NameDY271367
Unique NameDY271367
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length853
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271367 vs. ExPASy Swiss-Prot
Match: AB2A_ARATH (ABC transporter A family member 2 OS=Arabidopsis thaliana GN=ABCA2 PE=2 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 9.668e-66
Identity = 130/213 (61.03%), Postives = 162/213 (76.06%), Query Frame = 3
Query:    3 LKSKFGTGFIVTVNFTGSNNGQSPLNGDHEVASPHHDAVKQFFETHLDVLPKEENKAFLTYVIPHDREAILKKFFVELQDREKELGIADIQVSLTTLEDVFLNIAKQAELETAAAEGRLVTLNLTSGASVEIPPGARFVGIPGMESAENPRGIMVEVYWEQDDTGALCISGHSPEKPIPPHVELDASSASTSRG-NLFGQTG--PVHGIVIDP 632
            LKS+FGTGFI  ++F  SNN     NG  E  S   + VK+FF+ HL V P EENKAF+T+VIPHD+E +L  FF ELQDRE+E GI+DIQ+ L TLE+VFLNIA++AELE+AA +G +VTL+LTSG+SVEIP GARF+GIPG E+AENPRG+MVEVYW+QD++G+LCISGHS E PIP ++ +    A    G NL G+ G   V GIVIDP
Sbjct:  750 LKSRFGTGFIANISFVESNNH----NG--EAGSDSREPVKKFFKDHLKVKPIEENKAFMTFVIPHDKENLLTSFFAELQDREEEFGISDIQLGLATLEEVFLNIARKAELESAAVDGTMVTLDLTSGSSVEIPVGARFIGIPGTETAENPRGVMVEVYWQQDESGSLCISGHSTEMPIPENIPVTDPVAPGHGGVNLLGRRGRRQVQGIVIDP 956          
BLAST of DY271367 vs. ExPASy Swiss-Prot
Match: AB11A_ARATH (ABC transporter A family member 11 OS=Arabidopsis thaliana GN=ABCA11 PE=3 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.495e-58
Identity = 117/210 (55.71%), Postives = 152/210 (72.38%), Query Frame = 3
Query:    3 LKSKFGTGFIVTVNFTGSNNGQSPLNGDHEVA-SPHHDAVKQFFETHLDVLPKEENKAFLTYVIPHDREAILKKFFVELQDREKELGIADIQVSLTTLEDVFLNIAKQAELETAAAEGRLVTLNLTSGASVEIPPGARFVGIPGMESAENPRGIMVEVYWEQDDTGALCISGHSPEKPIPPHVELDASSASTSRGNLFGQTGPVHGIVID 629
            LKS+FGTGF+ TV+F  + N       D+ +     H+ +K+FF+ HL V P EENKAF+T+VIPHD+E +L  FF ELQ+RE E GI+DIQ+ L TLE+VFLNIA+QAELE+A AEG +VTL L SG S+EIP GARFVGIP  E+AENP G+MVEVYW+QD +G++CISGHS E  +P +V +    +  + G+   + G V GIVID
Sbjct:  751 LKSRFGTGFVATVSFIENKN-------DNNIGVGASHEPLKKFFKEHLKVEPTEENKAFMTFVIPHDKENLLTGFFEELQNRESEFGISDIQLGLATLEEVFLNIARQAELESATAEGNMVTLELASGISLEIPVGARFVGIPDTENAENPSGVMVEVYWQQDGSGSMCISGHSSEMRVPQNVPVTRPPSPNALGHKSLRQG-VRGIVID 952          
BLAST of DY271367 vs. ExPASy Swiss-Prot
Match: AB9A_ARATH (ABC transporter A family member 9 OS=Arabidopsis thaliana GN=ABCA9 PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.952e-58
Identity = 120/209 (57.42%), Postives = 150/209 (71.77%), Query Frame = 3
Query:    3 LKSKFGTGFIVTVNFTGSNNGQSPLNGDHEVASPHHDAVKQFFETHLDVLPKEENKAFLTYVIPHDREAILKKFFVELQDREKELGIADIQVSLTTLEDVFLNIAKQAELETAAAEGRLVTLNLTSGASVEIPPGARFVGIPGMESAENPRGIMVEVYWEQDDTGALCISGHSPEKPIPPHVELDASSASTSRGNLFGQTGPVHGIVID 629
            LKS+FGTGF+ TV+F  +    +P            + +K+FF+  L V P EENKAF+T+VIPHD+E +LK FF ELQDRE E GIADIQ+ L TLE+VFLNIA++AELE+A  EG +VTL L SG +VEIP GARFVGIPG E+AENPRG+MVEVYW+QD +G++CISGHS E  IP +V +    +S   G+  GQ   V GIVID
Sbjct:  752 LKSRFGTGFVATVSFIENKKDGAP------------EPLKRFFKERLKVEPTEENKAFMTFVIPHDKEQLLKGFFAELQDRESEFGIADIQLGLATLEEVFLNIARRAELESATVEGTMVTLELESGIAVEIPVGARFVGIPGTENAENPRGLMVEVYWQQDGSGSMCISGHSAEMRIPENVSVIYEPSSQVLGH--GQR-RVRGIVID 945          
The following BLAST results are available for this feature:
BLAST of DY271367 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
AB2A_ARATH9.668e-6661.03ABC transporter A family member 2 OS=Arabidopsis t... [more]
AB11A_ARATH1.495e-5855.71ABC transporter A family member 11 OS=Arabidopsis ... [more]
AB9A_ARATH1.952e-5857.42ABC transporter A family member 9 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP9YL21FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271367 ID=DY271367; Name=DY271367; organism=Citrus clementina; type=EST; length=853bp
GATTAAAGTCAAAGTTTGGTACTGGTTTCATTGTTACTGTTAATTTCACC
GGAAGCAATAATGGACAAAGTCCTCTTAATGGAGATCATGAAGTTGCAAG
TCCTCATCATGATGCAGTGAAGCAGTTCTTTGAAACTCATTTAGATGTGT
TACCAAAAGAGGAGAATAAAGCATTCCTGACATATGTCATTCCCCATGAT
AGAGAGGCGATTTTGAAAAAATTTTTTGTGGAGCTCCAAGATAGAGAAAA
AGAATTGGGTATAGCAGATATTCAAGTAAGTCTCACAACACTAGAAGATG
TTTTCTTGAATATAGCAAAACAGGCAGAACTAGAAACTGCTGCTGCTGAA
GGAAGGTTGGTCACTCTAAACTTGACATCCGGGGCATCAGTTGAGATACC
TCCAGGAGCAAGGTTTGTGGGGATTCCTGGAATGGAATCTGCAGAGAATC
CTAGAGGCATTATGGTTGAAGTATACTGGGAGCAAGATGATACTGGTGCT
CTCTGCATTTCCGGCCACTCTCCTGAAAAACCAATACCCCCTCATGTCGA
ACTAGATGCTTCTTCAGCTTCGACTTCCCGTGGAAATTTGTTCGGCCAGA
CAGGACCAGTTCATGGAATTGTCATCGATCCCAATCAGATTGGTGACTAA
CACCAGTTAGTACCTTTACACGTATTACTAATATTTTACTGGAATACAAG
GTTGTTTACAGGATTTTTGTAATTCTAAAGGATGTATTTGTAAATCAATG
TGAAAATTTTATTTCTTTTTTCTGTAAATGCAACCAAAAAACAGTGAAAG
TTGCCTTTACAATTTTTTCTTAAAAAAAATTTAATTATTTTCTTGAATTT
GCG
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