DY271370

Overview
NameDY271370
Unique NameDY271370
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length842
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271370 vs. ExPASy Swiss-Prot
Match: RS5_CICAR (40S ribosomal protein S5 (Fragment) OS=Cicer arietinum GN=RPS5 PE=2 SV=1)

HSP 1 Score: 284.263 bits (726), Expect = 5.933e-76
Identity = 142/166 (85.54%), Postives = 154/166 (92.77%), Query Frame = 2
Query:  101 DPSQPHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNPAIYLLPTGARESAFRNIKTYCRML 598
            DP+Q   +VKLFNRW+F+DVQ++D+SL DYIGV  +KHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRI+KHAMEIIHLLTDQNPIQVIVDAV+NSGPREDATRIGSAGVVRRQAVDISPLRRVN AIYLL TGARE+AFRNIK+    L
Sbjct:    3 DPTQ--IEVKLFNRWSFDDVQLSDVSLIDYIGVVPSKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDQNPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKSIAECL 166          
BLAST of DY271370 vs. ExPASy Swiss-Prot
Match: RS52_ARATH (40S ribosomal protein S5-2 OS=Arabidopsis thaliana GN=RPS5B PE=1 SV=2)

HSP 1 Score: 282.722 bits (722), Expect = 1.726e-75
Identity = 142/176 (80.68%), Postives = 155/176 (88.07%), Query Frame = 2
Query:   71 MATAVVAQSQDPSQPHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNPAIYLLPTGARESAFRNIKTYCRML 598
            MATA    ++       +VKLFNRWT++DV V DISL DYIGVQAAKHAT+VPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLL+D NPIQVI+DA++NSGPREDATRIGSAGVVRRQAVDISPLRRVN AI+L+ TGARE+AFRNIKT    L
Sbjct:    1 MATAADVDAEIQQALTNEVKLFNRWTYDDVTVTDISLVDYIGVQAAKHATFVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIFLITTGAREAAFRNIKTIAECL 176          
BLAST of DY271370 vs. ExPASy Swiss-Prot
Match: RS51_ARATH (40S ribosomal protein S5-1 OS=Arabidopsis thaliana GN=RPS5A PE=1 SV=1)

HSP 1 Score: 279.641 bits (714), Expect = 1.461e-74
Identity = 140/176 (79.55%), Postives = 154/176 (87.50%), Query Frame = 2
Query:   71 MATAVVAQSQDPSQPHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNPAIYLLPTGARESAFRNIKTYCRML 598
            MA +    ++   Q   +VKLFNRW+F+DV V DISL DYIGVQ +KHAT+VPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLL+D NPIQVI+DA++NSGPREDATRIGSAGVVRRQAVDISPLRRVN AI+LL TGARE+AFRNIKT    L
Sbjct:    1 MAASAEIDAEIQQQLTNEVKLFNRWSFDDVSVTDISLVDYIGVQPSKHATFVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIFLLTTGAREAAFRNIKTIAECL 176          
BLAST of DY271370 vs. ExPASy Swiss-Prot
Match: RS5_MOUSE (40S ribosomal protein S5 OS=Mus musculus GN=Rps5 PE=2 SV=3)

HSP 1 Score: 245.358 bits (625), Expect = 6.524e-68
Identity = 119/159 (74.84%), Postives = 139/159 (87.42%), Query Frame = 2
Query:  122 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNPAIYLLPTGARESAFRNIKTYCRML 598
            D+KLF +W+ +DVQ+NDISL DYI V+  K+A Y+PH+AGRY+ KRFRKAQCPIVERLTNS+MMHGRNNGKKLM VRIVKHA EIIHLLT +NP+QV+V+A+INSGPRED+TRIG AG VRRQAVD+SPLRRVN AI+LL TGARE+AFRNIK     L
Sbjct:   16 DIKLFGKWSTDDVQINDISLQDYIAVKE-KYAKYLPHSAGRYAAKRFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKNIAECL 173          

HSP 2 Score: 34.2686 bits (77), Expect = 6.524e-68
Identity = 20/36 (55.56%), Postives = 25/36 (69.44%), Query Frame = 3
Query:  585 IAECLADELL*CRQGFPLTAYAIKKKDEN*RNAQGH 692
            IAECLADEL+   +G    +YAIKKKDE  R A+ +
Sbjct:  169 IAECLADELINAAKG-SSNSYAIKKKDELERVAKSN 203          
BLAST of DY271370 vs. ExPASy Swiss-Prot
Match: RS5_HUMAN (40S ribosomal protein S5 OS=Homo sapiens GN=RPS5 PE=1 SV=4)

HSP 1 Score: 248.054 bits (632), Expect = 4.712e-65
Identity = 124/174 (71.26%), Postives = 146/174 (83.91%), Query Frame = 2
Query:   77 TAVVAQSQDPSQPHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNPAIYLLPTGARESAFRNIKTYCRML 598
            TA  A ++ P     D+KLF +W+ +DVQ+NDISL DYI V+  K+A Y+PH+AGRY+ KRFRKAQCPIVERLTNS+MMHGRNNGKKLM VRIVKHA EIIHLLT +NP+QV+V+A+INSGPRED+TRIG AG VRRQAVD+SPLRRVN AI+LL TGARE+AFRNIKT    L
Sbjct:    6 TAAPAVAETP-----DIKLFGKWSTDDVQINDISLQDYIAVKE-KYAKYLPHSAGRYAAKRFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECL 173          
BLAST of DY271370 vs. ExPASy Swiss-Prot
Match: RS5_BOVIN (40S ribosomal protein S5 OS=Bos taurus GN=RPS5 PE=2 SV=3)

HSP 1 Score: 248.054 bits (632), Expect = 4.712e-65
Identity = 124/174 (71.26%), Postives = 146/174 (83.91%), Query Frame = 2
Query:   77 TAVVAQSQDPSQPHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNPAIYLLPTGARESAFRNIKTYCRML 598
            TA  A ++ P     D+KLF +W+ +DVQ+NDISL DYI V+  K+A Y+PH+AGRY+ KRFRKAQCPIVERLTNS+MMHGRNNGKKLM VRIVKHA EIIHLLT +NP+QV+V+A+INSGPRED+TRIG AG VRRQAVD+SPLRRVN AI+LL TGARE+AFRNIKT    L
Sbjct:    6 TAAPAVAETP-----DIKLFGKWSTDDVQINDISLQDYIAVKE-KYAKYLPHSAGRYAAKRFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECL 173          
BLAST of DY271370 vs. ExPASy Swiss-Prot
Match: RS5_RAT (40S ribosomal protein S5 OS=Rattus norvegicus GN=Rps5 PE=2 SV=3)

HSP 1 Score: 243.432 bits (620), Expect = 1.161e-63
Identity = 122/174 (70.11%), Postives = 144/174 (82.76%), Query Frame = 2
Query:   77 TAVVAQSQDPSQPHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNPAIYLLPTGARESAFRNIKTYCRML 598
            TA  A ++ P     D+KLF +W+ +DVQ+NDISL DYI V+  K+A Y+PH+AGRY+   FRKAQCPIVERLTNS+MMHGRNNGKKLM VRIVKHA EIIHLLT +NP+QV+V+A+INSGPRED+TRIG AG VRRQAVD+SPLRRVN AI+LL TGARE+AFRNIKT    L
Sbjct:    6 TATPAVAETP-----DIKLFGKWSTDDVQINDISLQDYIAVKE-KYAKYLPHSAGRYAANGFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECL 173          
BLAST of DY271370 vs. ExPASy Swiss-Prot
Match: RS5_NEUCR (40S ribosomal protein S5 OS=Neurospora crassa GN=rps-5 PE=3 SV=2)

HSP 1 Score: 241.891 bits (616), Expect = 3.377e-63
Identity = 120/179 (67.04%), Postives = 146/179 (81.56%), Query Frame = 2
Query:  125 VKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNPAIYLLPTGARESAFRNIKTYCRMLGR*TPLMPPRVSSNSLCDQEK 661
            VKLFNRW++EDV++ DISL+DYI +++     Y+PH+AGRY+ KRFRKA CPI+ERLTNSLMMHGRNNGKKLMAVRIV HA EIIHL+TDQNPIQ+ VDA++N GPRED+TRIGSAG VRRQAVD+SPLRRVN AI LL TGARE++FRN+K+    L     +   + SSNS   ++K
Sbjct:   28 VKLFNRWSYEDVEIRDISLTDYIQIRSP---VYLPHSAGRYAAKRFRKANCPIIERLTNSLMMHGRNNGKKLMAVRIVAHAFEIIHLMTDQNPIQIAVDAIVNCGPREDSTRIGSAGTVRRQAVDVSPLRRVNQAIALLTTGAREASFRNVKSIAECLAE-ELINAAKGSSNSYAIKKK 202          
BLAST of DY271370 vs. ExPASy Swiss-Prot
Match: RS5A_DROME (40S ribosomal protein S5a OS=Drosophila melanogaster GN=RpS5a PE=1 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.853e-61
Identity = 121/176 (68.75%), Postives = 143/176 (81.25%), Query Frame = 2
Query:   71 MATAVVAQSQDPSQPHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNPAIYLLPTGARESAFRNIKTYCRML 598
            + T VV+ ++ P     ++KLF RW+ +DV VNDISL DYI V+  K A Y+PH+AGRY+ KRFRKAQCPIVERLT SLMM GRNNGKKLMA RIVKH+ EIIHLLT +NP+Q++V A+INSGPRED+TRIG AG VRRQAVD+SPLRRVN AI+LL TGARE+AFRNIKT    L
Sbjct:   28 LETNVVSTTELP-----EIKLFGRWSCDDVTVNDISLQDYISVKE-KFARYLPHSAGRYAAKRFRKAQCPIVERLTCSLMMKGRNNGKKLMACRIVKHSFEIIHLLTGENPLQILVSAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECL 197          
BLAST of DY271370 vs. ExPASy Swiss-Prot
Match: RS5_PODCA (40S ribosomal protein S5 OS=Podocoryne carnea GN=RPS5 PE=2 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 9.196e-61
Identity = 117/180 (65.00%), Postives = 145/180 (80.56%), Query Frame = 2
Query:  122 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNPAIYLLPTGARESAFRNIKTYCRMLGR*TPLMPPRVSSNSLCDQEK 661
            D+KLF +W  E + ++DISL+DYI V+   HA Y+PHTA RY+VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIV+H+ EI+HLLT +NP+Q++ +A+ NSGPRED+TRIG AG VRRQAVD++PLRRVN AI+LL TGARE++FRNIK+    L     +   R SSNS   ++K
Sbjct:   22 DIKLFGKWPLEGLNISDISLTDYIAVKD-NHAVYLPHTAARYAVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVRHSFEIMHLLTGENPLQLVCEAISNSGPREDSTRIGRAGTVRRQAVDVAPLRRVNQAIWLLCTGAREASFRNIKSIAECLAD-ELINAARGSSNSYAIKKK 199          
The following BLAST results are available for this feature:
BLAST of DY271370 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
RS5_CICAR5.933e-7685.5440S ribosomal protein S5 (Fragment) OS=Cicer ariet... [more]
RS52_ARATH1.726e-7580.6840S ribosomal protein S5-2 OS=Arabidopsis thaliana... [more]
RS51_ARATH1.461e-7479.5540S ribosomal protein S5-1 OS=Arabidopsis thaliana... [more]
RS5_MOUSE6.524e-6874.8440S ribosomal protein S5 OS=Mus musculus GN=Rps5 P... [more]
RS5_HUMAN4.712e-6571.2640S ribosomal protein S5 OS=Homo sapiens GN=RPS5 P... [more]
RS5_BOVIN4.712e-6571.2640S ribosomal protein S5 OS=Bos taurus GN=RPS5 PE=... [more]
RS5_RAT1.161e-6370.1140S ribosomal protein S5 OS=Rattus norvegicus GN=R... [more]
RS5_NEUCR3.377e-6367.0440S ribosomal protein S5 OS=Neurospora crassa GN=r... [more]
RS5A_DROME1.853e-6168.7540S ribosomal protein S5a OS=Drosophila melanogast... [more]
RS5_PODCA9.196e-6165.0040S ribosomal protein S5 OS=Podocoryne carnea GN=R... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YM01FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271370 ID=DY271370; Name=DY271370; organism=Citrus clementina; type=EST; length=842bp
CGAGCGGCAGCTTATTCTTATTATTTTATCTCTCTCGCTCTCTCACTCTC
TCAAAGCTCTTCAGGTAAGAATGGCGACTGCTGTAGTGGCACAATCTCAA
GACCCATCACAGCCTCACTACGATGTGAAGCTCTTCAATAGGTGGACTTT
CGAGGATGTTCAGGTCAATGACATCTCGTTGAGTGATTATATTGGCGTGC
AAGCGGCCAAGCACGCTACTTATGTGCCTCACACTGCTGGGAGGTACTCA
GTTAAGCGTTTCCGGAAGGCCCAATGTCCCATTGTTGAGAGGCTTACGAA
CTCTCTTATGATGCACGGTCGTAACAACGGCAAGAAATTGATGGCCGTCA
GGATTGTTAAGCATGCCATGGAGATCATTCACCTTTTGACTGACCAGAAC
CCAATTCAAGTCATTGTTGACGCTGTCATCAACAGTGGTCCAAGGGAAGA
TGCTACCCGTATTGGATCTGCTGGTGTTGTTAGGCGTCAGGCTGTGGATA
TTTCCCCATTGCGCCGTGTGAATCCAGCGATCTATCTACTCCCCACTGGT
GCTCGTGAATCGGCTTTTCGTAACATCAAGACTTATTGCCGAATGCTTGG
CCGATGAACTCCTTTAATGCCGCCAAGGGTTTCCTCTAACAGCTTATGCG
ATCAAGAAAAAGGATGAAAATTGAAGAAATGCGCAAGGCCACATCCCTGA
GGACGTGATAGTGGAAAAACCCAATGCGAAAGTTTGACTTTTCAAAAAAA
ACAAAAACTTTTGGACAAAGTTTTTGTTGGCCTTTTTCACAAATGTGGGT
CCCATTTTTGAATACAAAGAACTTGAGGGAGGCATTCACCGC
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