DY271375

Overview
NameDY271375
Unique NameDY271375
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1010
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271375 vs. ExPASy Swiss-Prot
Match: EF1G2_ORYSJ (Elongation factor 1-gamma 2 OS=Oryza sativa subsp. japonica GN=Os02g0220500 PE=2 SV=2)

HSP 1 Score: 335.109 bits (858), Expect = 3.897e-91
Identity = 163/221 (73.76%), Postives = 185/221 (83.71%), Query Frame = 1
Query:   79 MALVLHVGQENKNGFKGLIAAEYAGVEVKLAENFEMGVTNKSPEFLKMNPLGKVPVLETPDGPVFESNAIARYVARLKADNQLYGSSLIDYAHVEQWMDFSAMEIDANISRWVYPRLGYMQYIPLAEEGAVAALKRALDALNIHLASNTYLVGHSVTLADIVMICNLYYGFKLIMTKSFTSEFPHVERYLWTVAHPPKIKKFWVDFKQAQSVPAVPSAKKA 741
            MALVLH G  NKN FK LIAAEY+GV+V+L +NF+MGV+NK+PEFLKMNP+GK+PVLETPDGPVFESNAIARYV R KADN LYGSSLI+YAH+EQW DFSA E+DANI +W+YPRLG   Y+ ++EE A+AALKR+L ALN HLASNTYLVGHSVTLADIVM CNLY GF  IMTKSFTSEFPHVERY WT+ + P  KK   D KQA+SVP  P  KKA
Sbjct:    1 MALVLHAGSGNKNAFKALIAAEYSGVKVELVKNFQMGVSNKTPEFLKMNPIGKIPVLETPDGPVFESNAIARYVTRSKADNPLYGSSLIEYAHIEQWNDFSATEVDANIGKWLYPRLGIAPYVAVSEEAAIAALKRSLGALNTHLASNTYLVGHSVTLADIVMTCNLYMGFARIMTKSFTSEFPHVERYFWTMVNQPNFKKVLGDVKQAESVP--PVQKKA 219          
BLAST of DY271375 vs. ExPASy Swiss-Prot
Match: EF1G_PRUAV (Elongation factor 1-gamma OS=Prunus avium PE=2 SV=1)

HSP 1 Score: 332.798 bits (852), Expect = 1.207e-90
Identity = 159/220 (72.27%), Postives = 184/220 (83.64%), Query Frame = 1
Query:   79 MALVLHVGQENKNGFKGLIAAEYAGVEVKLAENFEMGVTNKSPEFLKMNPLGKVPVLETPDGPVFESNAIARYVARLKADNQLYGSSLIDYAHVEQWMDFSAMEIDANISRWVYPRLGYMQYIPLAEEGAVAALKRALDALNIHLASNTYLVGHSVTLADIVMICNLYYGFKLIMTKSFTSEFPHVERYLWTVAHPPKIKKFWVDFKQAQSVPAVPSAKK 738
            MALVLH G+ NKN FK LI AEY GV+V+LA +FEMGVTNK+PE+LK+NP+GKVP+LETPDGP+FESNAIARYVARLKADN L GSSLIDYAH+EQW+DF ++EIDANI  W  PR GY  Y+P AEE A++ALKRAL ALN HLASNTYLVGH VTLADI++ CNL++GF  +M KSFTSEFPHVERY WT+ + PK KK   D KQ +SVP VPSAKK
Sbjct:    1 MALVLHAGKTNKNAFKTLIVAEYTGVKVELAPDFEMGVTNKTPEYLKLNPIGKVPLLETPDGPIFESNAIARYVARLKADNPLIGSSLIDYAHIEQWIDFGSLEIDANIISWFRPRFGYAVYLPPAEEAAISALKRALGALNTHLASNTYLVGHFVTLADIIVTCNLFFGFTKLMIKSFTSEFPHVERYFWTLVNQPKFKKVLGDVKQTESVPPVPSAKK 220          

HSP 2 Score: 22.7126 bits (47), Expect = 1.207e-90
Identity = 13/50 (26.00%), Postives = 25/50 (50.00%), Query Frame = 2
Query:  731 QRKPAQAKGSAKPKAQAETKKKSPKPQSGTP*KKR-NP*TQNKKTLLDPA 877
            Q K  ++K   +PK +A+ +   PK ++    ++   P  +N   LL P+
Sbjct:  223 QPKETKSKAKEEPKKEAKKEPAKPKAEAAEEVEEAPKPKPKNPLDLLPPS 272          
BLAST of DY271375 vs. ExPASy Swiss-Prot
Match: EF1G3_ORYSJ (Elongation factor 1-gamma 3 OS=Oryza sativa subsp. japonica GN=Os06g0571400 PE=2 SV=1)

HSP 1 Score: 331.257 bits (848), Expect = 5.627e-90
Identity = 162/221 (73.30%), Postives = 185/221 (83.71%), Query Frame = 1
Query:   79 MALVLHVGQENKNGFKGLIAAEYAGVEVKLAENFEMGVTNKSPEFLKMNPLGKVPVLETPDGPVFESNAIARYVARLKADNQLYGSSLIDYAHVEQWMDFSAMEIDANISRWVYPRLGYMQYIPLAEEGAVAALKRALDALNIHLASNTYLVGHSVTLADIVMICNLYYGFKLIMTKSFTSEFPHVERYLWTVAHPPKIKKFWVDFKQAQSVPAVPSAKKA 741
            MALVLH G  NKN FK LIAAEY GV+V+L +NFEMGV+NK+PEFLKMNPLGK+PVLETP+G VFESNAIARYVARLK ++ L GSSLIDY+H+EQWMDFSA E+DANI RW+YPRLG+  Y+P+ EE A+ +LKR+L ALN HLASNTYLVGHSVTLADIVM CNLYYGF  I+ KSFTSEFPHVERY WT+ + P  KK   DFKQA+SVP  P  KKA
Sbjct:    1 MALVLHCGSGNKNAFKALIAAEYTGVKVELTKNFEMGVSNKTPEFLKMNPLGKIPVLETPEGAVFESNAIARYVARLKDNSSLCGSSLIDYSHIEQWMDFSATEVDANIGRWLYPRLGFGPYVPVLEEFAITSLKRSLGALNTHLASNTYLVGHSVTLADIVMTCNLYYGFVRILIKSFTSEFPHVERYFWTMVNQPNFKKVIGDFKQAESVP--PVQKKA 219          
BLAST of DY271375 vs. ExPASy Swiss-Prot
Match: EF1G1_ORYSJ (Elongation factor 1-gamma 1 OS=Oryza sativa subsp. japonica GN=Os02g0220600 PE=2 SV=1)

HSP 1 Score: 328.176 bits (840), Expect = 4.764e-89
Identity = 158/223 (70.85%), Postives = 186/223 (83.41%), Query Frame = 1
Query:   79 MALVLHVGQENKNGFKGLIAAEYAGVEVKLAENFEMGVTNKSPEFLKMNPLGKVPVLETPDGPVFESNAIARYVARLKADNQLYGSSLIDYAHVEQWMDFSAMEIDANISRWVYPRLGYMQYIPLAEEGAVAALKRALDALNIHLASNTYLVGHSVTLADIVMICNLYYGFKLIMTKSFTSEFPHVERYLWTVAHPPKIKKFWVDFKQAQSVPAVPSAKKACS 747
            MALVLH    NKN FK LIAAEY+GV+V+LA+NF+MGV+NK+PE+LKMNP+GKVP+LETPDGPVFESNAIARYV R K+DN LYGSSLI+YAH+EQW+DFSA E+DAN  +W++PRLG+  Y+ ++EE A+AALKR+L ALN HLASNTYLVGHSVTLADIVM CNLY GF  IMTK+FTSEFPHVERY WT+ + P  KK   D KQA SVP V   KKA +
Sbjct:    1 MALVLHTFDGNKNAFKALIAAEYSGVKVELAKNFQMGVSNKTPEYLKMNPIGKVPILETPDGPVFESNAIARYVTRSKSDNPLYGSSLIEYAHIEQWIDFSATEVDANTGKWLFPRLGFAPYVAVSEEAAIAALKRSLGALNTHLASNTYLVGHSVTLADIVMTCNLYMGFARIMTKNFTSEFPHVERYFWTMVNQPNFKKVMGDVKQADSVPQV--QKKAAA 221          
BLAST of DY271375 vs. ExPASy Swiss-Prot
Match: EF1G2_ARATH (Probable elongation factor 1-gamma 2 OS=Arabidopsis thaliana GN=At1g57720 PE=2 SV=1)

HSP 1 Score: 301.597 bits (771), Expect = 4.775e-81
Identity = 144/219 (65.75%), Postives = 176/219 (80.37%), Query Frame = 1
Query:   79 MALVLHVGQENKNGFKGLIAAEYAGVEVKLAENFEMGVTNKSPEFLKMNPLGKVPVLETPDGPVFESNAIARYVARLKADNQLYGSSLIDYAHVEQWMDFSAMEIDANISRWVYPRLGYMQYIPLAEEGAVAALKRALDALNIHLASNTYLVGHSVTLADIVMICNLYYGFKLIMTKSFTSEFPHVERYLWTVAHPPKIKKFWVDFKQAQSVPAVPSAK 735
            MALV+H  + NK   K LIAAEYAGV+++ + +F+MGVTNKSPEFLKMNP+GKVPVLETP+GP+FESNAIARYV+R   DN L GSSLI+YAH+EQW+DFS++EIDAN+ +W  PR+GY  +   AEE A++ALKR L+ALN HLASNT+LVGHSVTLADIV ICNL  GF  +MTK FTS FPHVERY WT+ + P+ KK   D KQ ++VP VP+ K
Sbjct:    1 MALVMHTYKGNKGANKALIAAEYAGVKIEESADFQMGVTNKSPEFLKMNPIGKVPVLETPEGPIFESNAIARYVSRKNGDNSLNGSSLIEYAHIEQWIDFSSLEIDANMLKWFAPRMGYAPFSAPAEEAAISALKRGLEALNTHLASNTFLVGHSVTLADIVTICNLNLGFATVMTKKFTSAFPHVERYFWTMVNQPEFKKVLGDAKQTEAVPPVPTKK 219          
BLAST of DY271375 vs. ExPASy Swiss-Prot
Match: EF1G1_ARATH (Probable elongation factor 1-gamma 1 OS=Arabidopsis thaliana GN=At1g09640 PE=2 SV=1)

HSP 1 Score: 296.59 bits (758), Expect = 1.536e-79
Identity = 143/221 (64.71%), Postives = 172/221 (77.83%), Query Frame = 1
Query:   79 MALVLHVGQENKNGFKGLIAAEYAGVEVKLAENFEMGVTNKSPEFLKMNPLGKVPVLETPDGPVFESNAIARYVARLKADNQLYGSSLIDYAHVEQWMDFSAMEIDANISRWVYPRLGYMQYIPLAEEGAVAALKRALDALNIHLASNTYLVGHSVTLADIVMICNLYYGFKLIMTKSFTSEFPHVERYLWTVAHPPKIKKFWVDFKQAQSVPAVPSAKKA 741
            MALVLH  + NK+  K LIAAEY GV++ +  +F+MGVTNK+P FLKMNP+GKVPVLETP+G VFESNAIARYV+RL  DN L GSSLI+YA +EQW+DFS++EI A+I RW  PR+G+M Y   AEEGA++ LKRALDALN HL SNTYLVGHS+TLADI+ +CNL  GF  +MTK FTSEFPHVERY WTV + P   K   D KQ ++VP + S K A
Sbjct:    1 MALVLHTYKGNKSAEKALIAAEYVGVQIDVPSDFQMGVTNKTPAFLKMNPIGKVPVLETPEGSVFESNAIARYVSRLNGDNSLNGSSLIEYAQIEQWIDFSSLEIYASILRWFGPRMGFMPYSAPAEEGAISTLKRALDALNTHLTSNTYLVGHSITLADIITVCNLNLGFATVMTKKFTSEFPHVERYFWTVVNQPNFTKVLGDVKQTEAVPPIASKKAA 221          
BLAST of DY271375 vs. ExPASy Swiss-Prot
Match: EF1G_RAT (Elongation factor 1-gamma OS=Rattus norvegicus GN=Eef1g PE=2 SV=3)

HSP 1 Score: 149.828 bits (377), Expect = 2.322e-35
Identity = 97/247 (39.27%), Postives = 137/247 (55.47%), Query Frame = 1
Query:   91 LHVGQENKNGFKGLIAAEYAGVEVKLAE---NFEMGVTNKSPEFLKMNPLGKVPVLETPDG-PVFESNAIARYVARLKADNQLYGSSLIDYAHVEQWMDFSAMEIDANISRWVYPRLGYMQYIPLAEEGAVAALKRALDALNIHLASNTYLVGHSVTLADIVMICNLYYGFKLIMTKSFTSEFPHVERYLWTVAHPPKIKKFWVDFKQAQSVPAVPSAKKACSS*GIC*T----KGPGRNQKKKPQT 807
            L+   EN   FK LIAA+Y+G ++++     +F  G TN++PEFL+  P GKVP  E  DG  VFESNAIA YV+    + +L GS+    A V QW+ F+  +I    S WV+P LG M +   A E A   +KR L  L+ HL + T+LVG  VTLADI ++C L + +K ++  SF   FP+  R+  T  + P+ +    + K  + + A   AKK   S     T    KG  R +K+KPQT
Sbjct:    6 LYTYPENWRAFKALIAAQYSGAQIRVLSAPPHFHFGQTNRTPEFLRKFPAGKVPAFEGDDGFCVFESNAIAYYVS----NEELRGSTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGIMHHNKQATENAKEEVKRILGLLDTHLKTRTFLVGERVTLADITVVCTLLWLYKQVLEPSFRQAFPNTNRWFLTCINQPQFRAILGEVKLCEKM-AQFDAKKFAESQPKKDTPRKEKG-SREEKQKPQT 246          
BLAST of DY271375 vs. ExPASy Swiss-Prot
Match: EF1GA_XENLA (Elongation factor 1-gamma-A OS=Xenopus laevis GN=eef1g-A PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.413e-35
Identity = 84/200 (42.00%), Postives = 120/200 (60.00%), Query Frame = 1
Query:   91 LHVGQENKNGFKGLIAAEYAGVEVKLAEN---FEMGVTNKSPEFLKMNPLGKVPVLETPDG-PVFESNAIARYVARLKADNQLYGSSLIDYAHVEQWMDFSAMEIDANISRWVYPRLGYMQYIPLAEEGAVAALKRALDALNIHLASNTYLVGHSVTLADIVMICNLYYGFKLIMTKSFTSEFPHVERYLWTVAHPPKIK 678
            L+   +N   +K LIAA+Y+G  +K+A +   F+ GVTNK+PEFLK  PLGKVP  E  DG  +FES+AIA YV     +++L G++ +  A V QW+ FS   I    S WV+P LG MQY   A E A   +K  L  L+ HL + T+LVG  +TLADI + C+L + +K ++  SF   F +V R+  T  + P+ +
Sbjct:    6 LYTYPDNWRAYKPLIAAQYSGFPIKVASSAPEFQFGVTNKTPEFLKKFPLGKVPAFEGKDGFCLFESSAIAHYVG----NDELRGTTRLHQAQVIQWVSFSDSHIVPPASAWVFPTLGIMQYNKQATEQAKEGIKTVLGVLDSHLQTRTFLVGERITLADITVTCSLLWLYKQVLEPSFRQPFGNVTRWFVTCVNQPEFR 201          

HSP 2 Score: 21.557 bits (44), Expect = 2.413e-35
Identity = 9/28 (32.14%), Postives = 15/28 (53.57%), Query Frame = 2
Query:  740 PAQAKGSAKPKAQAETKKKSPKPQSGTP 823
            P + K + +PK + E KKK+    +  P
Sbjct:  231 PKKEKPAKEPKKEKEEKKKAAPTPAPAP 258          
BLAST of DY271375 vs. ExPASy Swiss-Prot
Match: EF1G_ARTSA (Elongation factor 1-gamma OS=Artemia salina PE=1 SV=3)

HSP 1 Score: 148.673 bits (374), Expect = 5.173e-35
Identity = 85/204 (41.67%), Postives = 123/204 (60.29%), Query Frame = 1
Query:   91 LHVGQENKNGFKGLIAAEYAGVEVKLAENFEMGVTNKSPEFLKMNPLGKVPVLETPDGP-VFESNAIARYVARLKADNQLYGSSLIDYAHVEQWMDFSAMEIDANISRWVYPRLGYMQYIPLAEEGAVAALKRALDALNIHLASNTYLVGHSVTLADIVMICNLYYGFKLIMTKSFTSEFPHVERYLWTVAHPPKIKKFWVDFK 699
            L+   EN   FK LIAA+Y+G ++++A++F  G TNKS  FLK  PLGKVP  E+ DG  + ESNAIA YVA    +  L GSS ++ A + QWM F+  EI      WV+P LG MQ+   A   A   + +AL AL+ HL + TYLVG  +TLADIV+ C L + ++ ++ ++F   + +  R+  T+ +  ++K    DFK
Sbjct:    6 LYTYPENFRAFKALIAAQYSGAKLEIAKSFVFGETNKSDAFLKSFPLGKVPAFESADGHCIAESNAIAYYVA----NETLRGSSDLEKAQIIQWMTFADTEILPASCTWVFPVLGIMQFNKQATARAKEDIDKALQALDDHLLTRTYLVGERITLADIVVTCTLLHLYQHVLDEAFRKSYVNTNRWFITLINQKQVKAVIGDFK 205          
BLAST of DY271375 vs. ExPASy Swiss-Prot
Match: EF1G_MOUSE (Elongation factor 1-gamma OS=Mus musculus GN=Eef1g PE=1 SV=3)

HSP 1 Score: 148.288 bits (373), Expect = 6.756e-35
Identity = 97/246 (39.43%), Postives = 136/246 (55.28%), Query Frame = 1
Query:   91 LHVGQENKNGFKGLIAAEYAGVEVKLAE---NFEMGVTNKSPEFLKMNPLGKVPVLETPDG-PVFESNAIARYVARLKADNQLYGSSLIDYAHVEQWMDFSAMEIDANISRWVYPRLGYMQYIPLAEEGAVAALKRALDALNIHLASNTYLVGHSVTLADIVMICNLYYGFKLIMTKSFTSEFPHVERYLWTVAHPPKIKKFWVDFKQAQSVPAVPSAKKACSS*GIC*T----KGPGRNQKKKPQ 804
            L+   EN   FK LIAA+Y+G +V++     +F  G TN++PEFL+  P GKVP  E  DG  VFESNAIA YV+    + +L GS+    A V QW+ F+  +I    S WV+P LG M +   A E A   +KR L  L+ HL + T+LVG  VTLADI ++C L + +K ++  SF   FP+  R+  T  + P+ +    + K  + + A   AKK   S     T    KG  R +K+KPQ
Sbjct:    6 LYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTNRTPEFLRKFPAGKVPAFEGDDGFCVFESNAIAYYVS----NEELRGSTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGIMHHNKQATENAKEEVKRILGLLDTHLKTRTFLVGERVTLADITVVCTLLWLYKQVLEPSFRQAFPNTNRWFLTCINQPQFRAILGEVKLCEKM-AQFDAKKFAESQPKKDTPRKEKG-SREEKQKPQ 245          
The following BLAST results are available for this feature:
BLAST of DY271375 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
EF1G2_ORYSJ3.897e-9173.76Elongation factor 1-gamma 2 OS=Oryza sativa subsp.... [more]
EF1G_PRUAV1.207e-9072.27Elongation factor 1-gamma OS=Prunus avium PE=2 SV=... [more]
EF1G3_ORYSJ5.627e-9073.30Elongation factor 1-gamma 3 OS=Oryza sativa subsp.... [more]
EF1G1_ORYSJ4.764e-8970.85Elongation factor 1-gamma 1 OS=Oryza sativa subsp.... [more]
EF1G2_ARATH4.775e-8165.75Probable elongation factor 1-gamma 2 OS=Arabidopsi... [more]
EF1G1_ARATH1.536e-7964.71Probable elongation factor 1-gamma 1 OS=Arabidopsi... [more]
EF1G_RAT2.322e-3539.27Elongation factor 1-gamma OS=Rattus norvegicus GN=... [more]
EF1GA_XENLA2.413e-3542.00Elongation factor 1-gamma-A OS=Xenopus laevis GN=e... [more]
EF1G_ARTSA5.173e-3541.67Elongation factor 1-gamma OS=Artemia salina PE=1 S... [more]
EF1G_MOUSE6.756e-3539.43Elongation factor 1-gamma OS=Mus musculus GN=Eef1g... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP9YM08FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271375 ID=DY271375; Name=DY271375; organism=Citrus clementina; type=EST; length=1010bp
AACTCCCAGTCTCTGTGGCCTTTGAGGAGAACGCTCGCATTCATCTGTAA
TTTGAGCGAATCGTTTCTCCGTTAAGCCATGGCTCTGGTCTTGCATGTTG
GGCAGGAAAACAAAAATGGATTCAAAGGACTCATTGCTGCTGAGTACGCT
GGTGTGGAAGTCAAATTGGCTGAGAATTTTGAGATGGGTGTCACTAATAA
ATCCCCTGAATTTTTGAAGATGAACCCTCTTGGGAAGGTTCCTGTGTTGG
AGACACCTGATGGTCCGGTTTTTGAGAGCAATGCCATTGCCCGTTATGTT
GCACGTCTGAAAGCTGACAATCAACTATATGGTTCTTCTCTGATCGATTA
TGCTCATGTTGAGCAGTGGATGGATTTTTCTGCCATGGAGATTGATGCTA
ATATCTCCAGGTGGGTATATCCAAGACTTGGATATATGCAATACATTCCT
CTGGCTGAGGAAGGTGCTGTTGCCGCACTGAAGAGAGCGTTGGATGCTTT
GAACATTCATTTGGCTTCAAATACGTACTTGGTTGGCCATTCTGTCACCC
TGGCTGACATTGTCATGATATGCAATTTATATTATGGATTTAAGCTCATC
ATGACGAAGAGTTTCACCTCTGAGTTTCCCCATGTTGAGAGATACCTTTG
GACCGTGGCCCACCCACCAAAAATTAAGAAGTTTTGGGTTGATTTTAAGC
AAGCCCAATCTGTCCCAGCTGTTCCGTCTGCAAAGAAAGCCTGCTCAAGC
TAAGGGATCTGCTAAACCAAAGGCCCAGGCCGAAACCAAAAAAAAAAGCC
CCAAACCCCAAAGCGGAACCCCCTGAAAAAAAAGAAACCCCTAAACCCAA
AACAAAAAAACCCTCTTGGATCCGGCGCCCCCCAGGAAAAAACATTCTGG
GCAGACGGGAAAAAGCCTTCACTCCCCCCCAACTCCCCACCTCCCGGGAC
GTTCTCCCTTAAACGCACTCTGGGACAATAGATGACACCCGACCGCTCCC
CCCTTTTTGT
back to top