DY271376

Overview
NameDY271376
Unique NameDY271376
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1022
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY271376 vs. ExPASy Swiss-Prot
Match: RL281_ARATH (60S ribosomal protein L28-1 OS=Arabidopsis thaliana GN=RPL28A PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 5.592e-29
Identity = 63/91 (69.23%), Postives = 76/91 (83.52%), Query Frame = 3 
Query:    3 NRNTVTIQPGGKDLSVVLATAKTKKQNKPASLLHKSTMRKEFPRMAKAVVNQVADNYYRPDLKKAALARLIAVNRSLKVSKSGVKKRNRQA 275
            N+ TVTIQ   KD +VVLAT KTKKQNKP   ++KS ++KEFPRM+KAV NQV DNYYRPDLKKAALARL A+++ L+V+KSG K+RNRQA
Sbjct:   53 NKKTVTIQAADKDQAVVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALARLSAISKGLRVAKSGAKQRNRQA 143
[Close]
BLAST of DY271376 vs. ExPASy Swiss-Prot
Match: RL282_ARATH (60S ribosomal protein L28-2 OS=Arabidopsis thaliana GN=RPL28C PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 2.349e-27
Identity = 60/91 (65.93%), Postives = 73/91 (80.22%), Query Frame = 3 
Query:    3 NRNTVTIQPGGKDLSVVLATAKTKKQNKPASLLHKSTMRKEFPRMAKAVVNQVADNYYRPDLKKAALARLIAVNRSLKVSKSGVKKRNRQA 275
            N+ TVTIQ  GKD  VVL T KTK+QNKP   ++KS ++KEF RM+K V NQV DNYYRPDLKKAALARL A+++ L+V+KSG K+RNRQA
Sbjct:   53 NKKTVTIQAAGKDQGVVLGTTKTKRQNKPKLSVNKSILKKEFSRMSKVVANQVVDNYYRPDLKKAALARLSAISKGLRVAKSGPKRRNRQA 143
The following BLAST results are available for this feature:
BLAST of DY271376 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
RL281_ARATH5.592e-2969.2360S ribosomal protein L28-1 OS=Arabidopsis thalian... [more]
RL282_ARATH2.349e-2765.9360S ribosomal protein L28-2 OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP9YM10FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271376 ID=DY271376; Name=DY271376; organism=Citrus clementina; type=EST; length=1022bp
CGAATCGGAACACTGTGACCATTCAGCCTGGAGGCAAGGACCTGTCTGTG
GTGTTGGCCACTGCAAAGACCAAGAAGCAGAACAAGCCTGCCAGCTTGCT
TCACAAATCCACCATGAGGAAGGAGTTCCCAAGAATGGCTAAGGCTGTTG
TCAATCAGGTTGCTGATAACTACTACAGGCCAGACTTGAAGAAGGCAGCC
CTTGCAAGGCTTATTGCTGTTAACAGGAGCCTAAAGGTCTCAAAATCTGG
TGTCAAAAAGAGAAACAGGCAGGCTACGAAGGTTCCCGTTAGGAAGTGAA
CTTTAGGAGGAATCGAGTGATGTTATGCTTTGTTCTTGGAATGGTTTTAT
TTTAGTTCTTATAAGTATCAAGAAGACAGTTTTCATTTATGTTTAATTTT
TGATGTCCAGAAGATATTAGCCCCGTTCCACCCCACTGGGAAAATGGTCA
AAATTAACATTTCTAACTTGATTTTGTTTCTATGTTGAATTGGCGTTGTT
ATTCTGCATCATGAAATGAGTCGCTACTTTAAGACGCTAAAAAAAAAAAA
AAAAAAAACAACTTATGTTGCACAATGCTGGGCCTAGGAGAAAAACTTTT
GCACTCTCACTCGTCGCAGCTAACAAGGTAAATAATCCTTCTAAACAAAA
ACCATCAATTCCCACCCACCTGAATTACCCCTATAATCAACCGATCGATA
AAAGTAACAAACCCTACCCGGGCTCCCCTTCCCCCGTGTCCTCCAAGCTT
CTCTCTTGCTTTCNCCCTTATCACAACCACCTACCCTCGTCCCCGGCCAC
CCGCCTGTTTGTAAAAGATCACGAGAATACCACACACACAGCCCGACAAA
CACAAAATCAAAACAAAACACAAAACCAGAGCAAAAACCACAAACAACAC
CACCAGACCCCAACATTTTACCATCACAACACCATATCCAAAATTCAATC
AAATCTAAAAAAATAGTTACTAGCCCATCAGTTAGTCCACTCACCAACTC
CAAACTACTAATCGTCATGAAT
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