DY271377

Overview
NameDY271377
Unique NameDY271377
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length979
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY271377 vs. ExPASy Swiss-Prot
Match: AAPC_CENCI (Putative glucose-6-phosphate 1-epimerase OS=Cenchrus ciliaris PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 7.112e-42
Identity = 95/190 (50.00%), Postives = 123/190 (64.74%), Query Frame = 1 
Query:  271 IVHDKDGLPRIILTEPTGSSAEVLLYGGQVVSWKNERREELLFMSSKSFWKPPKAIRGGIPVCFPQFGNLGLLEQHGFARNRFWSLDEDASPLP--PANNQSTVDLILKSTEKDIKAWPRGFELRLRISIIP-GKLTLIPRVRNVDT---RLSLLCSRCVITYL*QISLKCVSKGFETPDYFDLSNDKKK 822
            +V    GL +++L       AE+ LYGGQV SWKN+  EELLF+SSK+ +KPPKAIRGGIP+C PQFG  G LEQHGFARNRFWS+D D  PLP  PA  ++ VDLIL+  E+D+K WP  FE RLR+++ P G L+L  R+RN +T     S   +     ++  IS   V +G ET DY D    K++
Sbjct:   26 LVKTPSGLEKVVLRGARNCCAEIYLYGGQVTSWKNDNGEELLFLSSKAIFKPPKAIRGGIPICLPQFGTHGNLEQHGFARNRFWSIDNDPPPLPVNPA-IKAFVDLILRPAEEDLKIWPHSFEFRLRVALGPSGDLSLTSRIRNTNTDGRPFSYTFAYHTYFFVSDISEVRV-EGLETMDYLDNLKAKER 213
The following BLAST results are available for this feature:
BLAST of DY271377 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
AAPC_CENCI7.112e-4250.00Putative glucose-6-phosphate 1-epimerase OS=Cenchr... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAP9YM11FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271377 ID=DY271377; Name=DY271377; organism=Citrus clementina; type=EST; length=979bp
CTATAGATATATAGATGTATATATAATCCGTGTAATGTGATTTTACTGTA
AGTAACATCATATCATGGACTTTTCAAGACCTTGAGAGAGAGTTGGTGGG
TGGGTTGTTCTTCAAACTCGAAGCCGATTAGGGGAATTAATAAAAATTAT
TGATATTTATTATAGTAATATTATTATCAAGAGCCAAACCTGGAGTGGAG
AAAAGGGAAAGTGAACCCATTTGTGAGCAGAATAAGGGCAAGGTTAGGGC
CAACAGCTATGCCATTGAATATAGTTCATGATAAAGATGGATTGCCCAGA
ATTATTTTGACTGAGCCAACTGGGTCATCTGCTGAGGTGCTTCTCTATGG
TGGGCAAGTTGTTTCCTGGAAGAATGAACGAAGAGAAGAACTGCTTTTTA
TGAGCAGCAAGTCTTTCTGGAAGCCACCTAAAGCCATCAGGGGAGGTATA
CCTGTCTGCTTCCCACAGTTTGGAAATCTTGGTTTACTGGAGCAACATGG
ATTCGCAAGGAACAGATTTTGGTCATTGGATGAAGATGCTTCTCCTCTGC
CCCCAGCTAACAACCAGTCAACAGTGGATCTGATATTGAAGTCCACAGAA
AAGGATATAAAGGCCTGGCCACGAGGCTTTGAGTTGCGTCTCCGTATTTC
TATCATTCCTGGCAAGCTGACTTTGATCCCTCGTGTGAGGAATGTGGATA
CAAGGCTTTCTCTTTTATGTTCGCGCTGCGTAATTACTTATCTGTAACAA
ATATCATTGAAGTGCGTGTCCAAAGGCTTTGAAACTCCTGATTACTTTGA
TTTATCGAATGATAAAAAAAAGGTTCCAAAAGCAAGCCGGATGCAATTAC
CTTTTGAAGGCGAGAATTGACAGAATTGTTTTTGAACCCCCCCACAAAAA
ATTGGCCCTTTTTTGACCCAGAAAAACAAAAAAAACCTTTTGAAACTGCG
GAAAAAAGGGGCAGGCCCAAATTTCTTTT
back to top