DY271391

Overview
NameDY271391
Unique NameDY271391
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1003
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271391 vs. ExPASy Swiss-Prot
Match: ALP14_SCHPO (Spindle pole body component alp14 OS=Schizosaccharomyces pombe GN=alp14 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 8.488e-22
Identity = 78/260 (30.00%), Postives = 117/260 (45.00%), Query Frame = 1
Query:  127 PWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIR---ELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKEVCD-AIAAKCLTG-RPKTVEKAQAVFMLWVELEAVDVFLDVMEXXXXXXXXXXXXXXIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELE---VEL-------VNVSGTARPTRKIRAEPDARRGRELISEDGGPGPS 861
            P E R++HK WKVR  A  + +       D  DN          L+K  + DSN   Q+    A +AY + +D      A+E+   +I+ KCLT  R  T E A    ML VE ++    ++ +               +  +   + +FGAK+IP K I+  +  LF H D+NVR  +  LT+ + RW G DP+K +LF+ +R    KELE    EL            + +PT +   E        L +E+  P PS
Sbjct:   13 PLESRIVHKVWKVRLSAYEECSKSFSLSADGSDNCFELWNNQSELWKSVLTDSNVAAQEAGTAAFVAYCRFSDPSHLLKAREISVLSISEKCLTSPRAGTRENALEALMLLVEADSAAPVIESIIPSLSARSPKVIASNVAAIASLVEQFGAKVIPSKMIIPHISNLFGHADKNVRKEASRLTVNIYRWTG-DPLKDLLFKDLRPVQTKELESLFAELPTEPPKQTRFLKSQQPTSEPNVETQVEEQPALENEESEPEPS 271          
BLAST of DY271391 vs. ExPASy Swiss-Prot
Match: CKAP5_MOUSE (Cytoskeleton-associated protein 5 OS=Mus musculus GN=Ckap5 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.109e-21
Identity = 76/248 (30.65%), Postives = 121/248 (48.79%), Query Frame = 1
Query:  127 PWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTG-RPKTVEKAQAVFMLWVELEAVDVFLDVMEXXXXXXXXXXXXXXIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNV-SGTARPTRKIRAEPDARRGRELISEDGGPGPSG 864
            P + +  HK WK R     +   +   I D K     +   L KK V DSNA VQ K L+A + Y++ A   AG+   EV   + +K     + K  E    + +++VE+E  +   + +               I+ + +ALSEFG+KII  K I+K+LP+LF+ +D+ VR  +K   +E+ RW  +D VK  L + +     KELE E V + +G  +P+R +R++ +     E     GG    G
Sbjct:   11 PVDQKCEHKLWKARLSGYEEALKIFQKIKDEKSPEWSKYLGLIKKFVTDSNAVVQLKGLEAALVYVENAHV-AGKTTGEVVSGVVSKVFNQPKAKAKELGIEICLMYVEIEKGESVQEELLKGLDNKNPKIIVACIETLRKALSEFGSKIISLKPIIKVLPKLFESRDKAVRDEAKLFAIEIYRW-NRDAVKHTL-QNINSVQLKELEEEWVKLPTGAPKPSRFLRSQQELEAKLEQQQSAGGDAEGG 255          
BLAST of DY271391 vs. ExPASy Swiss-Prot
Match: CKAP5_HUMAN (Cytoskeleton-associated protein 5 OS=Homo sapiens GN=CKAP5 PE=1 SV=3)

HSP 1 Score: 103.219 bits (256), Expect = 2.470e-21
Identity = 75/248 (30.24%), Postives = 123/248 (49.60%), Query Frame = 1
Query:  127 PWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTG-RPKTVEKAQAVFMLWVELEAVDVFLDVMEXXXXXXXXXXXXXXIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTA-RPTRKIRAEPDARRGRELISEDGGPGPSG 864
            P + +  HK WK R     +   +   I D K     +   L KK V DSNA VQ K L+A + Y++ A   AG+   EV   + +K     + K  E    + ++++E+E  +   + +               I+ + +ALSEFG+KII  K I+K+LP+LF+ +++ VR  +K + +E+ RWI +D ++  L + +     KELE E V +  +A RPTR +R++ +     E     GG    G
Sbjct:   11 PVDQKCEHKLWKARLSGYEEALKIFQKIKDEKSPEWSKFLGLIKKFVTDSNAVVQLKGLEAALVYVENAHV-AGKTTGEVVSGVVSKVFNQPKAKAKELGIEICLMYIEIEKGEAVQEELLKGLDNKNPKIIVACIETLRKALSEFGSKIILLKPIIKVLPKLFESREKAVRDEAKLIAVEIYRWI-RDALRPPL-QNINSVQLKELEEEWVKLPTSAPRPTRFLRSQQELEAKLEQQQSAGGDAEGG 255          
BLAST of DY271391 vs. ExPASy Swiss-Prot
Match: MTAA_DICDI (Centrosomal protein 224 OS=Dictyostelium discoideum GN=mtaA PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.691e-17
Identity = 55/186 (29.57%), Postives = 87/186 (46.77%), Query Frame = 1
Query:  133 EDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTG-RPKTVEKAQAVFMLWVELEAVDVFLDVMEXXXXXXXXXXXXXXIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGK 687
            EDR+ HKNWK R     +L     +  +       E GP FKK +AD N   Q++AL+ L A++   D    ++A      +  K     RP+  EK     +L +E ++ +  ++ +               +  + QAL  FG K IP K ILK     F+++D+ +R  +  L +E+ RWIGK
Sbjct:   12 EDRINHKNWKWRVSGLEELTTKFRNSIEGSGPLFNEWGPQFKKILADINPMSQERALEPLSAFIDRCDC-VNKFAASYVGVLVEKLFASTRPRAKEKTIECLLLTIEADSAEPVVEALLKGTSSTSPKILLASLAALTQALKTFGPKQIPVKLILKQFSPWFENRDKGIRDQASELFIEIYRWIGK 196          
BLAST of DY271391 vs. ExPASy Swiss-Prot
Match: DIS1_SCHPO (Phosphoprotein p93 OS=Schizosaccharomyces pombe GN=dis1 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.040e-11
Identity = 59/222 (26.58%), Postives = 100/222 (45.05%), Query Frame = 1
Query:  139 RLLHKNWKVRNEANIDLAALCDSITDPKDNRIREL---GPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKE-VCDAIAAKCLTGRPKTVEKA--QAVFMLWVELEAVDVFLDVMEXXXXXXXXXXXXXXIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPT 786
            ++  K+WKVR EA   L    +   D  D   +       L+K+ + DSN P Q+ A+ +L  +L  +       AK  V   +  KCL    +++  A  QA+ +L  + +A+D  L+ +               I  +   L  FG   + P    K++P LF   D+N+R  +  L++ L  W+G +  KT +F +++     +LE    NV  T+R T
Sbjct:   13 QIFDKSWKVRFEAYESLLHALNRALDDSDVCFQPWIHDPALWKQGLCDSNVPTQEHAVKSLRCFLDKSRQKGVNSAKSFVVAPLLEKCLPSPRQSIRDASHQALLIL-AKSDALDYVLEGLFSAARVKHPKQAVASIKELNSLLENFGIPALSPIPFYKLIPTLFAQSDKNIRQEASNLSITLYAWVG-NAFKTHVFPQLKQIQVSDLEASFQNV--TSRTT 230          
The following BLAST results are available for this feature:
BLAST of DY271391 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
ALP14_SCHPO8.488e-2230.00Spindle pole body component alp14 OS=Schizosacchar... [more]
CKAP5_MOUSE1.109e-2130.65Cytoskeleton-associated protein 5 OS=Mus musculus ... [more]
CKAP5_HUMAN2.470e-2130.24Cytoskeleton-associated protein 5 OS=Homo sapiens ... [more]
MTAA_DICDI3.691e-1729.57Centrosomal protein 224 OS=Dictyostelium discoideu... [more]
DIS1_SCHPO1.040e-1126.58Phosphoprotein p93 OS=Schizosaccharomyces pombe GN... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP9YN05FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271391 ID=DY271391; Name=DY271391; organism=Citrus clementina; type=EST; length=1003bp
TCAAAGAAAATTGAAAGAGAAAGAAAGAAAGCTTCAGTTAAATTTATTTC
GTTATTTGCGAGATTAACTTAGATCAAAGCGAAAATGTCCGAAGAAGAGA
AATTATTGAAAGAGGCGAAGAAATTACCGTGGGAAGATCGGTTACTGCAC
AAGAATTGGAAAGTTAGGAACGAGGCTAACATTGATTTGGCCGCTCTATG
CGACTCCATTACTGATCCTAAGGACAATCGCATCAGAGAACTAGGTCCGT
TGTTTAAGAAGACTGTTGCGGATTCGAATGCGCCGGTACAAGATAAGGCT
CTTGATGCGTTGATTGCTTACTTAAAAGCAGCGGATGCGGATGCCGGAAG
ATATGCCAAAGAAGTTTGTGATGCAATTGCGGCAAAATGCTTGACGGGGA
GGCCGAAGACAGTGGAGAAGGCTCAGGCGGTGTTTATGCTTTGGGTTGAA
TTGGAGGCAGTTGATGTTTTTCTTGATGTAATGGAGAAAGCAATAAAGAA
CAAGGTTGCCAAAGCAGTTGTGCCTGCTATTGACGTCATGTTTCAAGCAT
TAAGTGAATTTGGAGCGAAAATTATACCTCCGAAGAGGATTCTGAAGATG
CTTCCTGAGCTCTTTGACCATCAAGATCAAAATGTTCGTGCTTCTTCTAA
AGGACTGACACTCGAGCTCTGCCGGTGGATTGGGAAAGATCCTGTAAAAA
CAATATTGTTTGAGAAGATGAGAGATACTATGAAAAAAGAGCTGGAGGTT
GAGCTTGTAAATGTGTCGGGGACCGCTAGGCCGACTAGGAAGATAAGGGC
CGAACCAGACGCACGCCGCGGGCGGGAACTTATTTCTGAAGATGGGGGGC
CCGGGCCCTCCGGAAAAGTCCACAGCCGAAGTTCCCCCCGGAGAAAAAAG
AATAAGGACCTGGCCAATCCCGGTTGAATACGGACCCCCTTAAAAAAGTT
CGGGATTTTGGGGAAGGGTGGAAAGCCCCCAAGGGGGCCAAAAGGGAAGG
CCC
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