DY271395

Overview
NameDY271395
Unique NameDY271395
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length999
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271395 vs. ExPASy Swiss-Prot
Match: TSAP1_HUMAN (tRNA selenocysteine 1-associated protein 1 OS=Homo sapiens GN=TRNAU1AP PE=1 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 2.532e-34
Identity = 81/171 (47.37%), Postives = 112/171 (65.50%), Query Frame = 1
Query:  298 SLWIGDLQPWMEESYIASIFGHTGEFV-SGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTE--QNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLLSMTEMNG-VPCSTKPMRI 798
            SLW+GDL+P+M+E++I+  F   GE V S K+IRN+ T    GY F+EF   A AE+ L   NG  +P     + F+LN+ATYG   ++ D+ P++++FVGDL  DV D +L E F  VY S +G KVV D+ TG SKGYGFV+F DE EQ  ++TE  G V   +KP+R+
Sbjct:    4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 170          
BLAST of DY271395 vs. ExPASy Swiss-Prot
Match: TSAP1_BOVIN (tRNA selenocysteine 1-associated protein 1 OS=Bos taurus GN=TRNAU1AP PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 3.307e-34
Identity = 80/171 (46.78%), Postives = 112/171 (65.50%), Query Frame = 1
Query:  298 SLWIGDLQPWMEESYIASIFGHTGEFV-SGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTE--QNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLLSMTEMNG-VPCSTKPMRI 798
            SLW+GDL+P+M+E++I+  F   GE V S K+IRN+ T    GY F+EF   A AE+ L   NG  +P     + F+LN+ATYG   ++ D+ P++++FVGDL  DV D +L E F  VY S +G KVV D+ TG SKGYGFV+F DE EQ  ++TE  G +   +KP+R+
Sbjct:    4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAIGLGSKPVRL 170          
BLAST of DY271395 vs. ExPASy Swiss-Prot
Match: TSAP1_RAT (tRNA selenocysteine 1-associated protein 1 OS=Rattus norvegicus GN=Trnau1ap PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 4.319e-34
Identity = 81/171 (47.37%), Postives = 111/171 (64.91%), Query Frame = 1
Query:  298 SLWIGDLQPWMEESYIASIFGHTGEFV-SGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTE--QNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLLSMTEMNG-VPCSTKPMRI 798
            SLW+GDL+P+M+E++I+  F   GE V S K+IRN+ T    GY F+EF   A AE+ L   NG  +P     + F+LN+ATYG   ++ D+ P++++FVGDL  DV D +L E F  VY S +G KVV D+ TG SKGYGFV+F DE EQ  ++TE  G V    KP+R+
Sbjct:    4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGCKPVRL 170          
BLAST of DY271395 vs. ExPASy Swiss-Prot
Match: TSAP1_PONAB (tRNA selenocysteine 1-associated protein 1 OS=Pongo abelii GN=TRNAU1AP PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 7.368e-34
Identity = 80/171 (46.78%), Postives = 111/171 (64.91%), Query Frame = 1
Query:  298 SLWIGDLQPWMEESYIASIFGHTGEFV-SGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTE--QNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLLSMTEMNG-VPCSTKPMRI 798
            SLW+GDL+P+M+E++I+  F   GE V S K+IRN+ T    GY F+EF   A AE+ L   NG  +P     + F+LN+ TYG   ++ D+ P++++FVGDL  DV D +L E F  VY S +G KVV D+ TG SKGYGFV+F DE EQ  ++TE  G V   +KP+R+
Sbjct:    4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYVTYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 170          
BLAST of DY271395 vs. ExPASy Swiss-Prot
Match: TSAP1_MOUSE (tRNA selenocysteine 1-associated protein 1 OS=Mus musculus GN=Trnau1ap PE=1 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 7.368e-34
Identity = 81/171 (47.37%), Postives = 110/171 (64.33%), Query Frame = 1
Query:  298 SLWIGDLQPWMEESYIASIFGHTGEFV-SGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTE--QNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLLSMTEMNG-VPCSTKPMRI 798
            SLW+GDL+P+M+E++I+  F   GE V S K+IRN+ T    GY F+EF   A AE+ L   NG  +P     + F+LN+ATYG   ++ D+ P++++FVGDL  DV D +L E F  VY S +G KVV D  TG SKGYGFV+F DE EQ  ++TE  G V    KP+R+
Sbjct:    4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-PTGVSKGYGFVKFTDELEQKRALTECQGAVGLGCKPVRL 170          
BLAST of DY271395 vs. ExPASy Swiss-Prot
Match: TSP1L_DANRE (tRNA selenocysteine 1-associated protein 1-like OS=Danio rerio GN=trnau1apl PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 3.095e-32
Identity = 76/171 (44.44%), Postives = 108/171 (63.16%), Query Frame = 1
Query:  298 SLWIGDLQPWMEESYIASIFGHTGEFVSG-KVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTE--QNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLLSMTE-MNGVPCSTKPMRI 798
            SLW+GDL P+M+E++I   F   GE   G K+I ++ T  S GY F+E    A+ +R +Q  NG  +P +   + F+LN+ATYG   +R + GP+F++FVGDL ++V DY L + F   + S KGAKVVTD   G S+GYGFV+F DE+EQ  ++ E  N      KP+RI
Sbjct:    7 SLWMGDLDPYMDENFIKQAFSTMGETAFGVKIITHRVTGGSAGYCFVEMADEASVDRCVQRLNGKLVPGSNPPRKFKLNYATYG---KRPEPGPEFSVFVGDLTSEVDDYQLHQFFLKKFPSCKGAKVVTD-PYGNSRGYGFVKFSDENEQKKALEEFQNASGLGGKPIRI 173          
BLAST of DY271395 vs. ExPASy Swiss-Prot
Match: CSX1_SCHPO (RNA-binding post-transcriptional regulator csx1 OS=Schizosaccharomyces pombe GN=csx1 PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 6.896e-32
Identity = 71/171 (41.52%), Postives = 101/171 (59.06%), Query Frame = 1
Query:  298 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSE--GYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQ--DDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLLSMTEMNGVPCSTKPMRI 798
            +LW+GDL+PWM+ ++I  ++    E V+ KV+R+K ++      Y F++F S AAAER L  +N T +P     F+LNWAT G  +        P+F+IFVGDL     D  L  TFR++Y S   AK++ D  TG S+ YGFVRF  E EQ  ++  M G  C  +P+RI
Sbjct:   86 TLWMGDLEPWMDATFIQQLWASLNEPVNVKVMRSKASSSETLISYCFVQFSSSAAAERALMKYNNTMIPGAHCTFKLNWATGGGIQHNNFVSRDPEFSIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRI 256          
BLAST of DY271395 vs. ExPASy Swiss-Prot
Match: YG41_SCHPO (Uncharacterized RNA-binding protein C23E6.01c OS=Schizosaccharomyces pombe GN=SPBC23E6.01c PE=1 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 1.536e-31
Identity = 68/181 (37.57%), Postives = 110/181 (60.77%), Query Frame = 1
Query:  259 YGVAPDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGA-GERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLLSMTEMNGVPCSTKPMRI 798
            YG + D +     +LW+G+L+PW+ E++I  ++   G+ V  K+IRN+ T  + GY F+EF S   A   + + N   +P T   F+LNWA+ G   E+      +++IFVGDL+ +V ++ +   F + Y+S K AK++TD  T  S+GYGFVRF DE++Q  ++ EM G  C  +P+R+
Sbjct:   81 YGSSRDENVYQKTTLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAM-SMNNKPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRV 260          
BLAST of DY271395 vs. ExPASy Swiss-Prot
Match: TSAP1_DANRE (tRNA selenocysteine 1-associated protein 1 OS=Danio rerio GN=trnau1ap PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 6.469e-22
Identity = 61/162 (37.65%), Postives = 91/162 (56.17%), Query Frame = 1
Query:  292 IRSLWIGDLQPWMEESYIASIFGHTGE-FVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMP--STEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLLSMTEMNG 768
            + SLW+G+L+P+M+E +I   F   GE  V  ++IR+K T  + GYGF+E     A ER L+  NG  +P  +  + F+L+ + YG    +Q +   F++FV DL  DV D +L E F   +SS    K+V D   G SK  GFV F  E EQ  ++ ++ G
Sbjct:    1 MNSLWMGNLEPYMDEDFICRAFAQMGETVVKIRLIRDKITGKNAGYGFVELADDTAVERCLRKVNGKPLPGATPPKRFKLSRSNYG----KQGESSTFSLFVSDLTPDVDDGMLYEFFHYHFSSCCSGKIVLD-ANGHSKCCGFVSFESEREQKRALVDLQG 157          
BLAST of DY271395 vs. ExPASy Swiss-Prot
Match: NAM8_YEAST (Protein NAM8 OS=Saccharomyces cerevisiae GN=NAM8 PE=1 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 4.339e-18
Identity = 61/183 (33.33%), Postives = 98/183 (53.55%), Query Frame = 1
Query:  301 LWIGDLQPWMEESYIASIFGHTGEF-VSGKVIRNKQTNF----------SEGYGFIEFVSHAAAERVLQTFNGTQMPS-TEQNFRLNWATYGAGERRQD-----DGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLLSMTEMNGVPCSTKPMRI 798
            L++GDL P  +++ +  I+   GE  ++ +++ N   N           ++GY F++F S   A   L   NG  +P+   +  +LNWAT               G + +IFVGDLA +VT+  L E F   Y+S   AK+V D+ TG SKGYGFV+F +  EQ L+++EM GV  + + +++
Sbjct:   56 LYMGDLDPTWDKNTVRQIWASLGEANINVRMMWNNTLNNGSRSSMGPKNNQGYCFVDFPSSTHAANALLK-NGMLIPNFPNKKLKLNWATSSYSNSNNSLNNVKSGNNCSIFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALSEMQGVFLNGRAIKV 237          
The following BLAST results are available for this feature:
BLAST of DY271395 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
TSAP1_HUMAN2.532e-3447.37tRNA selenocysteine 1-associated protein 1 OS=Homo... [more]
TSAP1_BOVIN3.307e-3446.78tRNA selenocysteine 1-associated protein 1 OS=Bos ... [more]
TSAP1_RAT4.319e-3447.37tRNA selenocysteine 1-associated protein 1 OS=Ratt... [more]
TSAP1_PONAB7.368e-3446.78tRNA selenocysteine 1-associated protein 1 OS=Pong... [more]
TSAP1_MOUSE7.368e-3447.37tRNA selenocysteine 1-associated protein 1 OS=Mus ... [more]
TSP1L_DANRE3.095e-3244.44tRNA selenocysteine 1-associated protein 1-like OS... [more]
CSX1_SCHPO6.896e-3241.52RNA-binding post-transcriptional regulator csx1 OS... [more]
YG41_SCHPO1.536e-3137.57Uncharacterized RNA-binding protein C23E6.01c OS=S... [more]
TSAP1_DANRE6.469e-2237.65tRNA selenocysteine 1-associated protein 1 OS=Dani... [more]
NAM8_YEAST4.339e-1833.33Protein NAM8 OS=Saccharomyces cerevisiae GN=NAM8 P... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YN10FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271395 ID=DY271395; Name=DY271395; organism=Citrus clementina; type=EST; length=999bp
TCTTCTAGGGCTCAGTTTACCCTCTTCATCGGATCTCGAAAATCAATTAA
TAACGCTTTAGTAATTGATATAACGATGATGCAACAACCGCCATCACAGC
CTTCCGATCAGACTAGCCAGTACCAGCAGCAACATCAGCAGTGGATGGCG
TATCAACAGCAGTCGCAGCAGCAGCAACAACAACATCAAACTCCGGTGCC
ACCTCCGGTTGGATGGACTCCGCAGCCGGTGCCTCCTCCATCTCAGCAGA
CGCAGCCCTACGGTGTCGCCCCCGATGCTTCCTCCGACGGGATCCGTTCT
TTGTGGATCGGAGACTTGCAGCCGTGGATGGAGGAGAGTTATATCGCCAG
CATCTTCGGCCATACTGGAGAGTTTGTTTCAGGAAAGGTTATTCGCAACA
AGCAAACAAATTTTTCAGAGGGTTATGGTTTTATTGAGTTTGTTAGTCAT
GCTGCTGCAGAGAGGGTTTTGCAGACTTTTAATGGCACCCAAATGCCAAG
CACTGAGCAAAACTTCAGACTGAATTGGGCAACCTATGGGGCTGGTGAGA
GGCGTCAAGATGATGGTCCTGATTTTACAATTTTTGTGGGAGATTTGGCT
GCCGATGTAACTGACTATGTGCTACAAGAAACATTTAGAGCTGTCTACTC
GTCAGTGAAGGGTGCTAAAGTGGTCACTGATAGAACCACTGGACGCTCTA
AGGGGTATGGTTTTGTGAGATTTGGGGATGAAAGTGAACAATTGCTTTCC
ATGACCGAAATGAATGGGGTGCCCTGCTCTACTAAACCTATGCGGATTGG
GCCACCTGCCACCAAGAAAGCTGCCCCTGGCCCGCAATATCCAAAAAGCT
ACTTTACCAAATTACCCCAGGGAAGCCCGGGGCGAAGAAGGATCCAAAAA
ATACAAAAAATTTTTGGTGGGGGGTTGGAACCCTATGGTTAACAATGAAC
ATTTTGAAAAACGTTTTTTGGGCAAATAGGGGGAATTAGTTTCCTGGGA
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