DY271402

Overview
NameDY271402
Unique NameDY271402
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1095
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271402 vs. ExPASy Swiss-Prot
Match: CHI6_POPTR (Acidic endochitinase WIN6 OS=Populus trichocarpa GN=WIN6 PE=2 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 7.521e-41
Identity = 71/126 (56.35%), Postives = 84/126 (66.67%), Query Frame = 3
Query:   87 GGSAQNCGSGAVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDYCYPYC 464
            GG   + G     G  D G   D G L  II +  F+ LL +RND RC A GFYTY+AFI AAK FP FGN+G++ MRKREIAAF  QT HETTGGWPDAP G YAWGYCY+++++     C PYC
Sbjct:   63 GGGGGDGGDDGCDGGDDGGGDGDDGYLSDIIPKSKFDALLKFRNDARCPAAGFYTYNAFISAAKEFPDFGNTGDDLMRKREIAAFLGQTSHETTGGWPDAPCGPYAWGYCYLKEIN-----CQPYC 183          

HSP 2 Score: 38.5058 bits (88), Expect = 7.521e-41
Identity = 16/30 (53.33%), Postives = 21/30 (70.00%), Query Frame = 1
Query:  484 QYYGRGPNQLTWNCNYLRCGKTLEVDLFKQ 573
            QY GRGP QL+WN NY  CG  L++ L ++
Sbjct:  196 QYCGRGPIQLSWNYNYGLCGDDLKLPLLQE 225          
BLAST of DY271402 vs. ExPASy Swiss-Prot
Match: CHIT_PHAVU (Endochitinase OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 9.805e-41
Identity = 68/131 (51.91%), Postives = 85/131 (64.89%), Query Frame = 3
Query:   87 GGSAQNCGSGAVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDYC--YPYCPCS 473
            G +   CG G  C  +  G      +L  +ISR  F+ +L +RND  C A+GFYTYDAFI AAKA+P+FGN+G+   RKREIAAF  QT HETTGGW  AP G YAWGYC++R+  + S YC   P  PC+
Sbjct:   52 GSTTDYCGPG--CQSQCGGPSPAPTDLSALISRSTFDQMLKHRNDGACPAKGFYTYDAFIAAAKAYPSFGNTGDTATRKREIAAFLGQTSHETTGGWATAPDGPYAWGYCFVRE-RNPSTYCSATPQFPCA 179          

HSP 2 Score: 49.6766 bits (117), Expect = 9.805e-41
Identity = 30/74 (40.54%), Postives = 42/74 (56.76%), Query Frame = 1
Query:  478 PGQ-YYGRGPNQLTWNCNYLRCGKTLEVDLFKQSKPSWH*TSYINQVKPS-GFGRPAKAHKPFWHQVLYPQREP 693
            PGQ YYGRGP Q++WN NY +CG+ + VDL   +KP    T  +   K +  F   A++ KP  H V+  +  P
Sbjct:  180 PGQQYYGRGPIQISWNYNYGQCGRAIGVDLL--NKPDLVATDSVISFKSALWFWMTAQSPKPSSHDVITSRWTP 251          
BLAST of DY271402 vs. ExPASy Swiss-Prot
Match: CHI2_TOBAC (Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 2.827e-40
Identity = 73/136 (53.68%), Postives = 89/136 (65.44%), Query Frame = 3
Query:   87 GGSAQNCGSGAVCGERDTGHGTD--GGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDYCYP--YCPCSLAR 482
            G +   CG G  C  +  G  T   GG+LG IIS  MF+ +L +RND  C  +GFY+Y+AFI AA++FP FG SG+ T RKREIAAFFAQT HETTGGW  AP G YAWGYC++R+     DYC P    PC+  R
Sbjct:   48 GNTNDYCGPGN-CQSQCPGGPTPPGGGDLGSIISSSMFDQMLKHRNDNACQGKGFYSYNAFINAARSFPGFGTSGDTTARKREIAAFFAQTSHETTGGWATAPDGPYAWGYCWLREQGSPGDYCTPSGQWPCAPGR 182          

HSP 2 Score: 37.7354 bits (86), Expect = 2.827e-40
Identity = 25/74 (33.78%), Postives = 39/74 (52.70%), Query Frame = 1
Query:  478 PGQ-YYGRGPNQLTWNCNYLRCGKTLEVDLFKQSKPSWH*TSYINQVKPS-GFGRPAKAHKPFWHQVLYPQREP 693
            PG+ Y+GRGP Q++ N NY  CG+ + VDL   + P    T  +   K +  F    ++ KP  H V+  + +P
Sbjct:  180 PGRKYFGRGPIQISHNYNYGPCGRAIGVDLL--NNPDLVATDPVISFKSALWFWMTPQSPKPSCHDVIIGRWQP 251          
BLAST of DY271402 vs. ExPASy Swiss-Prot
Match: CHI5_PHAVU (Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 8.144e-40
Identity = 67/131 (51.15%), Postives = 84/131 (64.12%), Query Frame = 3
Query:   87 GGSAQNCGSGAVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDYC--YPYCPCS 473
            G +   CG    C  +  G      +L  +ISR  F+ +L +RND  C A+GFYTYDAFI AAKA+P+FGN+G+   RKREIAAF  QT HETTGGW  AP G YAWGYC++R+  + S YC   P  PC+
Sbjct:   51 GSTTDYCGKD--CQSQCGGPSPAPTDLSALISRSTFDQVLKHRNDGACPAKGFYTYDAFIAAAKAYPSFGNTGDTATRKREIAAFLGQTSHETTGGWATAPDGPYAWGYCFVRE-RNPSAYCSATPQFPCA 178          

HSP 2 Score: 49.6766 bits (117), Expect = 8.144e-40
Identity = 30/74 (40.54%), Postives = 42/74 (56.76%), Query Frame = 1
Query:  478 PGQ-YYGRGPNQLTWNCNYLRCGKTLEVDLFKQSKPSWH*TSYINQVKPS-GFGRPAKAHKPFWHQVLYPQREP 693
            PGQ YYGRGP Q++WN NY +CG+ + VDL   +KP    T  +   K +  F   A++ KP  H V+  +  P
Sbjct:  179 PGQQYYGRGPIQISWNYNYGQCGRAIGVDLL--NKPDLVATDSVISFKSALWFWMTAQSPKPSSHDVITSRWTP 250          
BLAST of DY271402 vs. ExPASy Swiss-Prot
Match: CHI1_THECC (Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 8.934e-40
Identity = 69/133 (51.88%), Postives = 87/133 (65.41%), Query Frame = 3
Query:   87 GGSAQNCGSGAVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTG--GWPDAPGGEYAWGYCYIRQVSHGSDYCY--PYCPCS 473
            G +   C     C  + +G G D G L  +I+RE F+ +L +RND  C ARGFYTYDAFI AAK+FPAF  +G++  RKRE+AAF AQT HETTG  GW  AP G Y WGYCY R++ + +DYC   P  PC+
Sbjct:   46 GNTDDYCKKENGCQSQCSGSGGDTGGLDSLITRERFDQMLLHRNDGGCPARGFYTYDAFIAAAKSFPAFATTGDDATRKREVAAFLAQTSHETTGGAGWA-APDGPYTWGYCYNREL-NPADYCQWDPNYPCA 176          

HSP 2 Score: 46.2098 bits (108), Expect = 8.934e-40
Identity = 20/30 (66.67%), Postives = 24/30 (80.00%), Query Frame = 1
Query:  478 PG-QYYGRGPNQLTWNCNYLRCGKTLEVDL 564
            PG QY+GRGP QLTWN NY +CG+ + VDL
Sbjct:  177 PGKQYFGRGPMQLTWNYNYGQCGRAIGVDL 206          

HSP 3 Score: 25.7942 bits (55), Expect = 8.934e-40
Identity = 10/15 (66.67%), Postives = 12/15 (80.00%), Query Frame = 2
Query:  569 NNPNLLGTEPVISIK 613
            NNP+LL T+P IS K
Sbjct:  208 NNPDLLATDPTISFK 222          
BLAST of DY271402 vs. ExPASy Swiss-Prot
Match: CHI1_TOBAC (Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 1.061e-39
Identity = 73/141 (51.77%), Postives = 89/141 (63.12%), Query Frame = 3
Query:   87 GGSAQNCGSGAVCGERDTGHGTD-------GGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDYCYP--YCPCSLAR 482
            G +   CG G  C  +  G  T        GG+LG IIS  MF+ +L +RND  C  +GFY+Y+AFI AA++FP FG SG+ T RKREIAAFFAQT HETTGGW  AP G YAWGYC++R+     DYC P    PC+  R
Sbjct:   48 GNTNDYCGPGN-CQSQCPGGPTPTPPTPPGGGDLGSIISSSMFDQMLKHRNDNACQGKGFYSYNAFINAARSFPGFGTSGDTTARKREIAAFFAQTSHETTGGWATAPDGPYAWGYCWLREQGSPGDYCTPSGQWPCAPGR 187          

HSP 2 Score: 37.7354 bits (86), Expect = 1.061e-39
Identity = 25/74 (33.78%), Postives = 39/74 (52.70%), Query Frame = 1
Query:  478 PGQ-YYGRGPNQLTWNCNYLRCGKTLEVDLFKQSKPSWH*TSYINQVKPS-GFGRPAKAHKPFWHQVLYPQREP 693
            PG+ Y+GRGP Q++ N NY  CG+ + VDL   + P    T  +   K +  F    ++ KP  H V+  + +P
Sbjct:  185 PGRKYFGRGPIQISHNYNYGPCGRAIGVDLL--NNPDLVATDPVISFKSALWFWMTPQSPKPSCHDVIIGRWQP 256          
BLAST of DY271402 vs. ExPASy Swiss-Prot
Match: CHI2_BRANA (Endochitinase CH25 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.347e-39
Identity = 67/128 (52.34%), Postives = 85/128 (66.41%), Query Frame = 3
Query:  108 GSGAVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDYCYPYC--PCSLARA 485
            G  + CG    G     G+L  IISR  F+D+L +RND  C ARGFYTYDAFI AAK+FP FG +G+   RK+EIAAFF QT HETTGGW  AP G Y+WGYC+ ++ +  S+YC P    PC+  ++
Sbjct:   55 GCQSQCGGTPPG---PTGDLSGIISRSQFDDMLKHRNDNACPARGFYTYDAFINAAKSFPGFGTTGDTATRKKEIAAFFGQTSHETTGGWATAPDGPYSWGYCFKQEQNPSSNYCSPSAEWPCASGKS 179          

HSP 2 Score: 42.3578 bits (98), Expect = 2.347e-39
Identity = 25/70 (35.71%), Postives = 36/70 (51.43%), Query Frame = 1
Query:  487 YYGRGPNQLTWNCNYLRCGKTLEVDLFKQSKPSWH*TSYINQVKPS-GFGRPAKAHKPFWHQVLYPQREP 693
            YYGRGP QL+WN NY +CG+ +  DL   + P       +   K +  F    ++ KP  H V+  Q +P
Sbjct:  180 YYGRGPMQLSWNYNYGQCGRAIGSDLL--NNPDLVSNDPVIAFKAAIWFWMTPQSPKPSCHAVIVGQWQP 247          
BLAST of DY271402 vs. ExPASy Swiss-Prot
Match: CHIB_ARATH (Basic endochitinase B OS=Arabidopsis thaliana GN=CHI-B PE=1 SV=3)

HSP 1 Score: 137.887 bits (346), Expect = 6.759e-39
Identity = 61/107 (57.01%), Postives = 77/107 (71.96%), Query Frame = 3
Query:  159 GELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDYCYPYC--PCS 473
            G+L  IIS   F+D+L +RND  C ARGFYTY+AFI AAK+FP FG +G+   RK+E+AAFF QT HETTGGW  AP G Y+WGYC+ ++ +  SDYC P    PC+
Sbjct:   84 GDLSGIISSSQFDDMLKHRNDAACPARGFYTYNAFITAAKSFPGFGTTGDTATRKKEVAAFFGQTSHETTGGWATAPDGPYSWGYCFKQEQNPASDYCEPSATWPCA 190          

HSP 2 Score: 45.0542 bits (105), Expect = 6.759e-39
Identity = 27/71 (38.03%), Postives = 37/71 (52.11%), Query Frame = 1
Query:  484 QYYGRGPNQLTWNCNYLRCGKTLEVDLFKQSKPSWH*TSYINQVKPS-GFGRPAKAHKPFWHQVLYPQREP 693
            +YYGRGP QL+WN NY  CG+ + VDL   + P       +   K +  F   A+  KP  H V+  Q +P
Sbjct:  194 RYYGRGPMQLSWNYNYGLCGRAIGVDLL--NNPDLVANDAVIAFKAAIWFWMTAQPPKPSCHAVIAGQWQP 262          
BLAST of DY271402 vs. ExPASy Swiss-Prot
Match: CHI4_SOLTU (Endochitinase 4 (Fragment) OS=Solanum tuberosum GN=CHTB4 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.149e-38
Identity = 68/135 (50.37%), Postives = 85/135 (62.96%), Query Frame = 3
Query:   87 GGSAQNCGSGAVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDERCHARG-FYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDYCYP--YCPCSLAR 482
            G     C SG        G G  GG++G +IS  MF+ +L +RND  C  +  FY+Y+AFI AA++F  FG +G+ T RKREIAAFFAQT HETTGGWP AP G YAWGYC++R+     DYC P    PC+  R
Sbjct:   52 GKCQSQCPSGPSPKPPTPGPGPSGGDIGSVISNSMFDQMLKHRNDNACQGKNNFYSYNAFINAARSFGGFGTTGDTTARKREIAAFFAQTSHETTGGWPTAPDGPYAWGYCFLREQGSPGDYCTPSGQWPCAPGR 186          

HSP 2 Score: 37.7354 bits (86), Expect = 1.149e-38
Identity = 25/74 (33.78%), Postives = 39/74 (52.70%), Query Frame = 1
Query:  478 PGQ-YYGRGPNQLTWNCNYLRCGKTLEVDLFKQSKPSWH*TSYINQVKPS-GFGRPAKAHKPFWHQVLYPQREP 693
            PG+ Y+GRGP Q++ N NY  CG+ + VDL   + P    T  +   K +  F    ++ KP  H V+  + +P
Sbjct:  184 PGRKYFGRGPIQISHNYNYGPCGRAIGVDLL--NNPDLVATDPVISFKSAIWFWMTPQSPKPSCHDVIIGRWQP 255          
BLAST of DY271402 vs. ExPASy Swiss-Prot
Match: CHIT_SOLTU (Endochitinase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.495e-38
Identity = 70/137 (51.09%), Postives = 88/137 (64.23%), Query Frame = 3
Query:   87 GGSAQNCGSGAVCGERDTGHGTD---GGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDYCYP--YCPCSLAR 482
            G +   CGSG  C  +  G G     GG+LG  IS  MF+ +L +RN+  C  + FY+Y+AFI AA++FP FG SG+   RKREIAAFFAQT HETTGGW  AP G YAWGYC++R+  +  DYC P    PC+  R
Sbjct:   51 GNTNDYCGSGN-CQSQCPGGGPGPGPGGDLGSAISNSMFDQMLKHRNENSCQGKNFYSYNAFINAARSFPGFGTSGDINARKREIAAFFAQTSHETTGGWASAPDGPYAWGYCFLRERGNPGDYCPPSSQWPCAPGR 186          

HSP 2 Score: 36.965 bits (84), Expect = 1.495e-38
Identity = 25/74 (33.78%), Postives = 38/74 (51.35%), Query Frame = 1
Query:  478 PGQ-YYGRGPNQLTWNCNYLRCGKTLEVDLFKQSKPSWH*TSYINQVKPS-GFGRPAKAHKPFWHQVLYPQREP 693
            PG+ Y+GRGP Q++ N NY  CG+ + VDL   + P    T  +   K +  F    ++ KP  H V+  +  P
Sbjct:  184 PGRKYFGRGPIQISHNYNYGPCGRAIGVDLL--NNPDLVATDPVISFKTALWFWMTPQSPKPSCHDVIIGRWNP 255          
The following BLAST results are available for this feature:
BLAST of DY271402 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHI6_POPTR7.521e-4156.35Acidic endochitinase WIN6 OS=Populus trichocarpa G... [more]
CHIT_PHAVU9.805e-4151.91Endochitinase OS=Phaseolus vulgaris PE=1 SV=1[more]
CHI2_TOBAC2.827e-4053.68Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1... [more]
CHI5_PHAVU8.144e-4051.15Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1[more]
CHI1_THECC8.934e-4051.88Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 S... [more]
CHI1_TOBAC1.061e-3951.77Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1... [more]
CHI2_BRANA2.347e-3952.34Endochitinase CH25 OS=Brassica napus PE=2 SV=1[more]
CHIB_ARATH6.759e-3957.01Basic endochitinase B OS=Arabidopsis thaliana GN=C... [more]
CHI4_SOLTU1.149e-3850.37Endochitinase 4 (Fragment) OS=Solanum tuberosum GN... [more]
CHIT_SOLTU1.495e-3851.09Endochitinase OS=Solanum tuberosum PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YN20FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271402 ID=DY271402; Name=DY271402; organism=Citrus clementina; type=EST; length=1095bp
GGATAATTGATATTATAACTCTTGCTTTCAAAATGAGGCTCATTGGGTCC
TTACTAATTTTCTCTCTAGTTTTATCTTTTGTACAAGGAGGTTCAGCACA
GAATTGTGGAAGCGGCGCTGTGTGCGGTGAACGTGATACTGGCCACGGGA
CGGATGGCGGTGAACTGGGCAAGATCATCTCAAGGGAGATGTTTGAAGAC
TTGCTTCCGTATAGAAATGATGAACGATGCCATGCCAGAGGCTTCTACAC
TTATGATGCTTTTATAGAGGCAGCCAAAGCTTTTCCAGCCTTTGGTAACT
CTGGAAATGAAACCATGCGTAAAAGAGAAATTGCTGCCTTTTTTGCCCAA
ACTGGCCATGAAACTACTGGGGGATGGCCCGATGCACCTGGTGGAGAATA
TGCTTGGGGATATTGCTATATTAGGCAAGTTAGCCATGGGTCCGACTACT
GTTATCCTTACTGTCCATGTTCCCTTGCCAGGGCAATACTATGGCCGAGG
TCCAAATCAACTCACTTGGAATTGCAATTACTTAAGGTGCGGAAAAACCC
TGGAGGTGGACTTATTCAAACAATCCAAACCTTCTTGGCACTGAACCAGT
TATATCAATCAAGTTAAGCCATCTGGATTTGGAAGACCTGCAAAAGCACA
CAAGCCCTTCTGGCACCAAGTCCTTTACCCACAAAGGGAACCCCTCACCC
CATAGATTTATATGGAAACCAGGCCCAGAGGACCCCGATCCGACCATATA
GTAGAAAACCAGGAGGCAACCCAAACTCCCTAAAGATCCGCAAGACCCTC
ACTTCATCACCATATAAACACTCCCTCAACACCTTTTCAAAGCAAAAATT
CGATTTAAAGGCTTCTATACAATCCAAATGCTAAACCTCTAACACTACTA
CTACACCACTTCTACATCGCACCACTAACAAAGCACTGCAAACTCTCTAC
CTCCAAGCAATCCACAACTTAGACCTCGTCCTAGCTAAGAACACTAAAAC
TCGATCGTAACATCAAACACAATACTCTTCAAACGAACAAAACAATAAGA
GGACCTCTGTCCATCTCGACCGGTATGCTCTACAGACGCACGTGC
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