DY271406

Overview
NameDY271406
Unique NameDY271406
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length889
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY271406 vs. ExPASy Swiss-Prot
Match: ARF2_ORYSJ (ADP-ribosylation factor 2 OS=Oryza sativa subsp. japonica GN=ARF PE=2 SV=2)

HSP 1 Score: 347.821 bits (891), Expect = 4.769e-95
Identity = 170/173 (98.27%), Postives = 172/173 (99.42%), Query Frame = 3 
Query:   81 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYTQSTCATSGEGLYEGLDWL 599
            MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+R+VEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWY QSTCATSGEGLYEGLDWL
Sbjct:    1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 173
[Close]
BLAST of DY271406 vs. ExPASy Swiss-Prot
Match: ARF1_ORYSJ (ADP-ribosylation factor 1 OS=Oryza sativa subsp. japonica GN=Os01g0813400 PE=2 SV=3)

HSP 1 Score: 347.821 bits (891), Expect = 4.769e-95
Identity = 170/173 (98.27%), Postives = 172/173 (99.42%), Query Frame = 3 
Query:   81 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYTQSTCATSGEGLYEGLDWL 599
            MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+R+VEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWY QSTCATSGEGLYEGLDWL
Sbjct:    1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 173
[Close]
BLAST of DY271406 vs. ExPASy Swiss-Prot
Match: ARF_VIGUN (ADP-ribosylation factor OS=Vigna unguiculata GN=ARF PE=2 SV=3)

HSP 1 Score: 346.28 bits (887), Expect = 1.388e-94
Identity = 169/173 (97.69%), Postives = 172/173 (99.42%), Query Frame = 3 
Query:   81 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYTQSTCATSGEGLYEGLDWL 599
            MGL+FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR+VEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWY QSTCATSGEGLYEGL+WL
Sbjct:    1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLEWL 173
[Close]
BLAST of DY271406 vs. ExPASy Swiss-Prot
Match: ARF_MAIZE (ADP-ribosylation factor OS=Zea mays GN=ARF1 PE=2 SV=2)

HSP 1 Score: 346.28 bits (887), Expect = 1.388e-94
Identity = 170/180 (94.44%), Postives = 174/180 (96.67%), Query Frame = 3 
Query:   81 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYTQSTCATSGEGLYEGLDWLLKTSLTR 620
            MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR+VEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL+SLRQRHWY QSTCAT+GEGLYEGLDWL     T+
Sbjct:    1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLNSLRQRHWYIQSTCATTGEGLYEGLDWLSSNIATK 180
[Close]
BLAST of DY271406 vs. ExPASy Swiss-Prot
Match: ARF2_ARATH (ADP-ribosylation factor 2 OS=Arabidopsis thaliana GN=ARF2-A PE=2 SV=3)

HSP 1 Score: 345.895 bits (886), Expect = 1.812e-94
Identity = 169/173 (97.69%), Postives = 171/173 (98.84%), Query Frame = 3 
Query:   81 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYTQSTCATSGEGLYEGLDWL 599
            MGL+F KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR+VEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWY QSTCATSGEGLYEGLDWL
Sbjct:    1 MGLSFAKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 173
[Close]
BLAST of DY271406 vs. ExPASy Swiss-Prot
Match: ARF1_DAUCA (ADP-ribosylation factor 1 OS=Daucus carota GN=ARF1 PE=2 SV=2)

HSP 1 Score: 345.51 bits (885), Expect = 2.367e-94
Identity = 169/173 (97.69%), Postives = 171/173 (98.84%), Query Frame = 3 
Query:   81 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYTQSTCATSGEGLYEGLDWL 599
            MGL+FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR+VEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEI DKLGLHSLRQRHWY QSTCATSGEGLYEGLDWL
Sbjct:    1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEIIDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 173
[Close]
BLAST of DY271406 vs. ExPASy Swiss-Prot
Match: ARF1_ARATH (ADP-ribosylation factor 1 OS=Arabidopsis thaliana GN=ARF1 PE=1 SV=2)

HSP 1 Score: 345.125 bits (884), Expect = 3.091e-94
Identity = 169/173 (97.69%), Postives = 171/173 (98.84%), Query Frame = 3 
Query:   81 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYTQSTCATSGEGLYEGLDWL 599
            MGL+F KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR+VEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWY QSTCATSGEGLYEGLDWL
Sbjct:    1 MGLSFGKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 173
[Close]
BLAST of DY271406 vs. ExPASy Swiss-Prot
Match: ARF1_SALBA (ADP-ribosylation factor 1 OS=Salix bakko GN=ARF1 PE=2 SV=3)

HSP 1 Score: 340.117 bits (871), Expect = 9.944e-93
Identity = 166/173 (95.95%), Postives = 169/173 (97.69%), Query Frame = 3 
Query:   81 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYTQSTCATSGEGLYEGLDWL 599
            MGL+FTKL  RLF+KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR+ EARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWY QSTCATSGEGLYEGLDWL
Sbjct:    1 MGLSFTKLLGRLFSKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVGEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 173
[Close]
BLAST of DY271406 vs. ExPASy Swiss-Prot
Match: ARF1_CHLRE (ADP-ribosylation factor 1 OS=Chlamydomonas reinhardtii GN=ARF1 PE=2 SV=2)

HSP 1 Score: 339.732 bits (870), Expect = 1.299e-92
Identity = 166/173 (95.95%), Postives = 168/173 (97.11%), Query Frame = 3 
Query:   81 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYTQSTCATSGEGLYEGLDWL 599
            MGL FTK  SRLF KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+R+VEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWY QSTCATSGEGLYEGLDWL
Sbjct:    1 MGLRFTKALSRLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 173
[Close]
BLAST of DY271406 vs. ExPASy Swiss-Prot
Match: ARF1_CATRO (ADP-ribosylation factor 1 OS=Catharanthus roseus GN=ARF1 PE=2 SV=3)

HSP 1 Score: 338.961 bits (868), Expect = 2.215e-92
Identity = 166/173 (95.95%), Postives = 170/173 (98.27%), Query Frame = 3 
Query:   81 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYTQSTCATSGEGLYEGLDWL 599
            MGL+FTKLFSRLFAKKEMRILMVGLDAAGKTTILY+LKLGEIVTTIPTIGFNVETVEY+ ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR+VEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDK GLHSLRQRHWY QSTCATSGEGLYEGLDWL
Sbjct:    1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYQLKLGEIVTTIPTIGFNVETVEYQYISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKHGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 173
The following BLAST results are available for this feature:
BLAST of DY271406 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 219
Match NameE-valueIdentityDescription
ARF2_ORYSJ4.769e-9598.27ADP-ribosylation factor 2 OS=Oryza sativa subsp. j... [more]
ARF1_ORYSJ4.769e-9598.27ADP-ribosylation factor 1 OS=Oryza sativa subsp. j... [more]
ARF_VIGUN1.388e-9497.69ADP-ribosylation factor OS=Vigna unguiculata GN=AR... [more]
ARF_MAIZE1.388e-9494.44ADP-ribosylation factor OS=Zea mays GN=ARF1 PE=2 S... [more]
ARF2_ARATH1.812e-9497.69ADP-ribosylation factor 2 OS=Arabidopsis thaliana ... [more]
ARF1_DAUCA2.367e-9497.69ADP-ribosylation factor 1 OS=Daucus carota GN=ARF1... [more]
ARF1_ARATH3.091e-9497.69ADP-ribosylation factor 1 OS=Arabidopsis thaliana ... [more]
ARF1_SALBA9.944e-9395.95ADP-ribosylation factor 1 OS=Salix bakko GN=ARF1 P... [more]
ARF1_CHLRE1.299e-9295.95ADP-ribosylation factor 1 OS=Chlamydomonas reinhar... [more]
ARF1_CATRO2.215e-9295.95ADP-ribosylation factor 1 OS=Catharanthus roseus G... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YO03FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271406 ID=DY271406; Name=DY271406; organism=Citrus clementina; type=EST; length=889bp
ATAAGCTTCGTTCTCCACACCCCCCCCCCCTCCCCTCTCTCTCTCGCGTT
CTCTGAAGATAGTGATCCCCAGCTGGAAGAATGGGGCTGACTTTCACAAA
GCTGTTCAGCCGGCTCTTTGCCAAGAAAGAGATGCGAATTCTAATGGTTG
GTCTTGATGCTGCTGGTAAGACCACTATCTTGTACAAGCTCAAGCTTGGA
GAGATTGTCACCACAATTCCTACCATTGGGTTTAATGTGGAGACCGTTGA
ATATAAAAACATCAGTTTCACTGTGTGGGATGTTGGTGGCCAGGACAAGA
TTCGTCCCTTGTGGAGGCATTATTTCCAGAACACTCAAGGTCTCATTTTT
GTTGTGGACAGCAATGACAGAGACCGTATTGTAGAAGCAAGGGATGAATT
GCATAGGATGTTGAATGAGGATGAGCTGCGAGATGCAGTGTTGCTTGTAT
TTGCTAACAAACAGGATCTTCCCAATGCAATGAATGCTGCTGAAATTACT
GATAAGCTTGGCCTCCACTCCCTCAGGCAGCGCCACTGGTACACCCAGAG
CACCTGTGCAACCTCTGGTGAGGGTCTTTATGAAGGGCTGGATTGGCTCC
TCAAAACATCCCTAACAAGGCCTGAAGCTGTTAAAATCTTTTTGCGGACT
GGCAATTCTGGATGCGGGGGTGAAAATTACTTATTTTTTTTTCTTTTTAA
CCCCTTTTTTTTGGAAACTTTTGGGTTGTGGGGTTGTTTGGGCCCAGGAA
TTTTTCAAATAATTTTGTAAAAAAAAATTGGTGGGTTGGAACTTGGCCCC
CAAGGGTTTGGGCTCGATTTAAATTCCGGAAATAGAAACAAATTGGGGGC
CCCCCCCATTTTTGAAATTTTTTTTTTCCTTTTCGTTTT
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