DY271410

Overview
NameDY271410
Unique NameDY271410
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length933
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271410 vs. ExPASy Swiss-Prot
Match: ORN_ARATH (Oligoribonuclease OS=Arabidopsis thaliana GN=At2g26970 PE=2 SV=2)

HSP 1 Score: 238.039 bits (606), Expect = 2.733e-68
Identity = 111/154 (72.08%), Postives = 135/154 (87.66%), Query Frame = 2
Query:  206 EYKMPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWYPRDLQEISFKR 667
            +YK PLVWIDLEMTGL +EVDRILEIACIIT+G LT+SVEGPDLV+ QTK+CLD M +WCQ HH ASGLT+KVL SA+TEREAE++V+EFVKK+VG+  PLLAGNSVYVDF+FLKKYMP+LA+LF H+LVDVSS+KALC  W+P + ++   K+
Sbjct:   41 DYKQPLVWIDLEMTGLNVEVDRILEIACIITNGDLTQSVEGPDLVVRQTKDCLDKMDDWCQTHHGASGLTKKVLLSAITEREAEQKVIEFVKKHVGSGNPLLAGNSVYVDFLFLKKYMPELAALFPHILVDVSSVKALCARWFPIERRKAPAKK 194          

HSP 2 Score: 43.1282 bits (100), Expect = 2.733e-68
Identity = 19/32 (59.38%), Postives = 26/32 (81.25%), Query Frame = 3
Query:  648 RKFPSKEQKHRALNDIKESIMELKY*QENIFK 743
            RK P+K+  HRA++DI+ESI ELKY ++ IFK
Sbjct:  188 RKAPAKKNNHRAMDDIRESIKELKYYKKTIFK 219          
BLAST of DY271410 vs. ExPASy Swiss-Prot
Match: ORN_BOVIN (Oligoribonuclease, mitochondrial OS=Bos taurus GN=REXO2 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.675e-39
Identity = 68/143 (47.55%), Postives = 94/143 (65.73%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWYPRDLQ 649
            +VW+DLEMTGL IE D+I+E+AC+ITD  L    EGP+L+I Q  E LDSM +WC+ HH  SGLT+ V  S +T ++AE + + FV++        LAGNSV+ D  FL KYMP       + ++DVS++K LC  WYP + +
Sbjct:   43 MVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCKEHHGKSGLTKAVKESTMTLQQAEYEFLSFVRQQTPPGLCPLAGNSVHADKKFLDKYMPQFMKHLHYRIIDVSTVKELCRRWYPEEYE 185          

HSP 2 Score: 38.891 bits (89), Expect = 3.675e-39
Identity = 19/35 (54.29%), Postives = 23/35 (65.71%), Query Frame = 3
Query:  639 EIYRKFPSKEQKHRALNDIKESIMELKY*QENIFK 743
            E Y   P K   HRAL+DI ESI EL++ + NIFK
Sbjct:  182 EEYEFAPKKAASHRALDDISESIKELQFYRNNIFK 216          
BLAST of DY271410 vs. ExPASy Swiss-Prot
Match: ORN_HUMAN (Oligoribonuclease, mitochondrial OS=Homo sapiens GN=REXO2 PE=1 SV=3)

HSP 1 Score: 144.05 bits (362), Expect = 4.788e-39
Identity = 68/143 (47.55%), Postives = 94/143 (65.73%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWYPRDLQ 649
            +VW+DLEMTGL IE D+I+E+AC+ITD  L    EGP+L+I Q  E LDSM +WC+ HH  SGLT+ V  S +T ++AE + + FV++        LAGNSV+ D  FL KYMP       + ++DVS++K LC  WYP + +
Sbjct:   43 MVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCKEHHGKSGLTKAVKESTITLQQAEYEFLSFVRQQTPPGLCPLAGNSVHEDKKFLDKYMPQFMKHLHYRIIDVSTVKELCRRWYPEEYE 185          

HSP 2 Score: 39.2762 bits (90), Expect = 4.788e-39
Identity = 19/38 (50.00%), Postives = 24/38 (63.16%), Query Frame = 3
Query:  639 EIYRKFPSKEQKHRALNDIKESIMELKY*QENIFKTNL 752
            E Y   P K   HRAL+DI ESI EL++ + NIFK  +
Sbjct:  182 EEYEFAPKKAASHRALDDISESIKELQFYRNNIFKKKI 219          
BLAST of DY271410 vs. ExPASy Swiss-Prot
Match: ORN_RAT (Oligoribonuclease, mitochondrial OS=Rattus norvegicus GN=Rexo2 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 6.238e-39
Identity = 68/143 (47.55%), Postives = 94/143 (65.73%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWYPRDLQ 649
            +VW+DLEMTGL IE D+I+E+AC+ITD  L    EGP+L+I Q  E LDSM +WC+ HH  SGLT+ V  S +T ++AE + + FV++        LAGNSV+ D  FL K+MP       + ++DVS++K LC  WYP D +
Sbjct:   43 MVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCKEHHGKSGLTKAVKESTVTLQQAEYEFLSFVRQQTPPGLCPLAGNSVHADKKFLDKHMPQFMKHLHYRIIDVSTVKELCRRWYPEDYE 185          

HSP 2 Score: 38.891 bits (89), Expect = 6.238e-39
Identity = 19/35 (54.29%), Postives = 23/35 (65.71%), Query Frame = 3
Query:  639 EIYRKFPSKEQKHRALNDIKESIMELKY*QENIFK 743
            E Y   P K   HRAL+DI ESI EL++ + NIFK
Sbjct:  182 EDYEFAPKKAASHRALDDISESIKELQFYRNNIFK 216          
BLAST of DY271410 vs. ExPASy Swiss-Prot
Match: ORN_MOUSE (Oligoribonuclease, mitochondrial OS=Mus musculus GN=Rexo2 PE=1 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 6.238e-39
Identity = 68/143 (47.55%), Postives = 94/143 (65.73%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWYPRDLQ 649
            +VW+DLEMTGL IE D+I+E+AC+ITD  L    EGP+L+I Q  E LDSM +WC+ HH  SGLT+ V  S +T ++AE + + FV++        LAGNSV+ D  FL K+MP       + ++DVS++K LC  WYP D +
Sbjct:   43 MVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCKEHHGKSGLTKAVKESTVTLQQAEYEFLSFVRQQTPPGLCPLAGNSVHADKKFLDKHMPQFMKHLHYRIIDVSTVKELCRRWYPEDYE 185          

HSP 2 Score: 38.891 bits (89), Expect = 6.238e-39
Identity = 19/35 (54.29%), Postives = 23/35 (65.71%), Query Frame = 3
Query:  639 EIYRKFPSKEQKHRALNDIKESIMELKY*QENIFK 743
            E Y   P K   HRAL+DI ESI EL++ + NIFK
Sbjct:  182 EDYEFAPKKAASHRALDDISESIKELQFYRNNIFK 216          
BLAST of DY271410 vs. ExPASy Swiss-Prot
Match: ORN_PASMU (Oligoribonuclease OS=Pasteurella multocida GN=orn PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 6.566e-35
Identity = 75/153 (49.02%), Postives = 95/153 (62.09%), Query Frame = 2
Query:  212 KMPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWYPRDLQEISFKRT 670
            K  L+WIDLEMTGL  E +RI+EIA I+TD  L    EGP L IHQ+ ECL  M +WC   H  +GL E+V +S LTER AE Q ++F+KK V      + GNSV  D  FL KYMP+LA  F +  +DVS++K L   W P  L+  + K T
Sbjct:    5 KQNLIWIDLEMTGLDPESERIIEIATIVTDKHLNILAEGPVLAIHQSDECLAKMNDWCMKTHTENGLVERVKNSRLTERAAELQTLDFLKKWVPKGVSPICGNSVSQDKRFLFKYMPELADYFHYRHLDVSTLKELASRWKPDVLKGFTKKNT 157          

HSP 2 Score: 29.6462 bits (65), Expect = 6.566e-35
Identity = 16/32 (50.00%), Postives = 22/32 (68.75%), Query Frame = 3
Query:  660 SKEQKHRALNDIKESIMELKY*QENIFKTNLK 755
            +K+  H AL+DI+ESI EL Y +E+    NLK
Sbjct:  153 TKKNTHLALDDIRESIAELAYYREHFI--NLK 182          
BLAST of DY271410 vs. ExPASy Swiss-Prot
Match: ORN_CAEEL (Probable oligoribonuclease OS=Caenorhabditis elegans GN=C08B6.8 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.459e-34
Identity = 63/139 (45.32%), Postives = 90/139 (64.75%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWYP 637
            ++WID EMTGL +E   + EIA I+TD +L     GPD+VIHQ KE LD+M EW +N    +GL EK++ S  +  +AE +V++F+K +       +AGNS+Y+D +F+KKYMP L     +  +DVS+IK L   WYP
Sbjct:   15 IIWIDCEMTGLDVEKQTLCEIALIVTDSELNTIATGPDIVIHQPKEVLDNMEEWPRNTFHENGLMEKIIASKYSMADAENEVIDFLKLHALPGKSPIAGNSIYMDRLFIKKYMPKLDKFAHYRCIDVSTIKGLVQRWYP 153          

HSP 2 Score: 34.6538 bits (78), Expect = 2.459e-34
Identity = 17/30 (56.67%), Postives = 21/30 (70.00%), Query Frame = 3
Query:  651 KFPSKEQKHRALNDIKESIMELKY*QENIF 740
            K P K+  HRA +DI ESI ELK  +E+IF
Sbjct:  156 KHPKKQCTHRAFDDIMESIAELKNYRESIF 185          
BLAST of DY271410 vs. ExPASy Swiss-Prot
Match: ORN_DROME (Probable oligoribonuclease OS=Drosophila melanogaster GN=CG10214 PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 5.421e-34
Identity = 64/139 (46.04%), Postives = 87/139 (62.59%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWYP 637
            +VW+DLEMTGL IE D+ILE+ACIITD  L    EGP   I+  +E  DSM EWC  HH  SGL ++   S +   EA   V+ +++KN+      L GNSVY D +F+ K+MP + +   + +VDVS+IK L   W+P
Sbjct:   38 IVWMDLEMTGLDIEKDKILEVACIITDQDLNVKSEGPCFAINHPQEVYDSMNEWCMKHHYNSGLIDRCKSSDVNLEEASNLVLSYLEKNIPKRACPLGGNSVYTDRLFIMKFMPLVDAYLHYRIVDVSTIKELAKRWHP 176          

HSP 2 Score: 36.1946 bits (82), Expect = 5.421e-34
Identity = 19/39 (48.72%), Postives = 25/39 (64.10%), Query Frame = 3
Query:  627 PGILEIYRKFPSKEQKHRALNDIKESIMELKY*QENIFK 743
            P IL+     P K   HR+L+DI+ESI EL Y + N+FK
Sbjct:  176 PAILD---SAPKKSFTHRSLDDIRESIKELAYYKANLFK 211          
BLAST of DY271410 vs. ExPASy Swiss-Prot
Match: ORN_VIBPA (Oligoribonuclease OS=Vibrio parahaemolyticus GN=orn PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 9.234e-34
Identity = 66/150 (44.00%), Postives = 93/150 (62.00%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWYPRDLQEISFKRT 670
            L+W+DLEMTGL  E  +I+EIA I+TD +L    EGP L +HQ +E L  M +WC N H ASGL E+V +S ++E++A  Q +EF++K V      + GNS+  D  FL K+MP+L   F +  +DVS++K L   W P  L   S + T
Sbjct:    8 LIWVDLEMTGLDPETHKIIEIASIVTDSELNILAEGPVLAVHQPEEELAKMDDWCTNTHTASGLVERVRNSKISEQDAVAQTIEFLEKWVPKGVSPICGNSIGQDRRFLYKHMPELEEYFHYRYLDVSTLKELTRRWKPEVLDGFSKQGT 157          

HSP 2 Score: 37.3502 bits (85), Expect = 9.234e-34
Identity = 18/28 (64.29%), Postives = 22/28 (78.57%), Query Frame = 3
Query:  660 SKEQKHRALNDIKESIMELKY*QENIFK 743
            SK+  H AL+DI+ESI ELKY +E IFK
Sbjct:  153 SKQGTHLALDDIRESIAELKYYRETIFK 180          
BLAST of DY271410 vs. ExPASy Swiss-Prot
Match: ORN_DICDI (Probable oligoribonuclease OS=Dictyostelium discoideum GN=rexo2-1 PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.201e-33
Identity = 70/148 (47.30%), Postives = 95/148 (64.19%), Query Frame = 2
Query:  194 PLEFEYKMPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPWYP 637
            P+  E    +VW+DLEMTGL I  D ILE+A +ITD +L    +GP+LVIH++ E L +M +WC  HH  SGLTE V +S ++  EAEK ++EFV+K+       LAGN+V+ D  FL K MP  A    + ++DVS+IK L   WYP
Sbjct:   10 PVINERSKRMVWVDLEMTGLDISKDVILEMAIVITDAELNVIEKGPNLVIHRSDEVLKNMNDWCIEHHGKSGLTEDVRNSKISLEEAEKIMLEFVRKHTDKGICPLAGNTVHEDRRFLLKEMPTFAEHLHYRIIDVSTIKELSRRWYP 157          

HSP 2 Score: 31.5722 bits (70), Expect = 1.201e-33
Identity = 17/33 (51.52%), Postives = 20/33 (60.61%), Query Frame = 3
Query:  645 YRKFPSKEQKHRALNDIKESIMELKY*QENIFK 743
            Y   P K   HRAL DI+ESI ELK  +  +FK
Sbjct:  158 YIPSPKKVCGHRALQDIEESIEELKSYRVTVFK 190          
The following BLAST results are available for this feature:
BLAST of DY271410 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
ORN_ARATH2.733e-6872.08Oligoribonuclease OS=Arabidopsis thaliana GN=At2g2... [more]
ORN_BOVIN3.675e-3947.55Oligoribonuclease, mitochondrial OS=Bos taurus GN=... [more]
ORN_HUMAN4.788e-3947.55Oligoribonuclease, mitochondrial OS=Homo sapiens G... [more]
ORN_RAT6.238e-3947.55Oligoribonuclease, mitochondrial OS=Rattus norvegi... [more]
ORN_MOUSE6.238e-3947.55Oligoribonuclease, mitochondrial OS=Mus musculus G... [more]
ORN_PASMU6.566e-3549.02Oligoribonuclease OS=Pasteurella multocida GN=orn ... [more]
ORN_CAEEL2.459e-3445.32Probable oligoribonuclease OS=Caenorhabditis elega... [more]
ORN_DROME5.421e-3446.04Probable oligoribonuclease OS=Drosophila melanogas... [more]
ORN_VIBPA9.234e-3444.00Oligoribonuclease OS=Vibrio parahaemolyticus GN=or... [more]
ORN_DICDI1.201e-3347.30Probable oligoribonuclease OS=Dictyostelium discoi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YO08FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271410 ID=DY271410; Name=DY271410; organism=Citrus clementina; type=EST; length=933bp
TGGACTCTCAAATGCATTCTCTGTGTTAGAGCTGGACGCTGACGACAGTC
AAGTCAAAATGCCTGCTGCTGCTTCTTCTTCCTCTTCTTCTTCTTCTTCT
TCTTCTTCTTCTTCCTGCAAATCAGTTGAGAGCAAAAGCAAAGCAAACAG
CTCTAGCAATTTGACTCTTGAAAACCAACAAAATTCTCAGACTCCCTTGG
AATTTGAGTACAAAATGCCCCTTGTGTGGATTGACTTGGAAATGACAGGT
TTGAAAATTGAAGTTGATCGAATACTGGAGATTGCTTGTATAATTACTGA
TGGCAAGTTGACAAAATCAGTGGAGGGACCTGATTTGGTTATCCATCAAA
CTAAAGAGTGTTTAGATAGCATGGGTGAATGGTGTCAAAATCATCATGAA
GCTAGTGGATTGACAGAAAAGGTGCTTCATAGTGCCCTGACTGAAAGAGA
AGCTGAAAAGCAGGTTGTAGAATTTGTCAAGAAAAATGTTGGTACATACA
CTCCTCTTCTTGCAGGGAATTCAGTGTATGTGGATTTTATGTTCTTAAAG
AAATACATGCCAGACTTAGCTAGTCTTTTCTCTCATGTACTTGTCGATGT
TAGCAGTATCAAGGCTTTATGCATGCCCTGGTATCCTAGAGATTTACAGG
AAATTTCCTTCAAAAGAACAGAAACACAGAGCCCTGAATGATATCAAAGA
AAGCATCATGGAACTCAAGTACTAACAGGAGAATATTTTTAAAACAAATT
TGAAGAAGTGATGCAAATACCATACGAATTGATTTGAGGGGTATTCCTTT
TCTTCCACCCCATTCCTAAGTTTTTGCCCCCAAGGTTTTTTAAAAAAGGG
GTAATTTTTGGTAAGTACCAATATTTCCTTTAAAAGTCCCTATTGAGTGG
ATGGATGTCCGGGCCTTGAACCCATTTAATTAA
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