DY271412
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY271412 vs. ExPASy Swiss-Prot
Match: PUS6_ARATH (RNA pseudourine synthase 6, chloroplastic OS=Arabidopsis thaliana GN=At4g21770 PE=2 SV=1) HSP 1 Score: 313.923 bits (803), Expect = 8.491e-85 Identity = 167/274 (60.95%), Postives = 203/274 (74.09%), Query Frame = 1 Query: 34 SSIFTNNGRSLGAPVSLLRTLASTHASCHRNIYKSNVVLS-FSSSNRNFVCESWKRHVFTHXXXXXXXXXXXPSSYGYPEYHRLLPCPSQNCPPRVEHLVVSEGGPVL-EYICRELNLPPLFVADLIHFGAVYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWKSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTILRGTPLRMDNCPKGWVV 849 S T R+L APVSLLRTLAST + +++SN F SS + F C S + S+ GY EY+RL+PCP+ N PPR+EH+VV E ++ E+I ++L+LPPL+VADLI FGAV+YALVCPKPP TATPE++ +F+EVT PSVL KRSSIKGKTVREAQKTFR+TH +Q EAGTYLRVHVHPKR PRCY+IDWKSRI+AVT+S+V+LDKPAGT+VGGTTDNIEESCATFASRAL L T ++DNC +G VV Sbjct: 3 SPALTGGYRNLTAPVSLLRTLASTRVTTP--LFRSNKHSPRFISSPKRFTCLSLLK-----TDSQNQTTLSSSSNSGYHEYNRLMPCPAYNLPPRIEHMVVLEDDVLVSEFISKQLDLPPLYVADLIRFGAVHYALVCPKPPPTATPEEIILFEEVTSPSVLKKRSSIKGKTVREAQKTFRVTHTNQYAEAGTYLRVHVHPKRSPRCYEIDWKSRIVAVTDSYVILDKPAGTTVGGTTDNIEESCATFASRALDLPEPLKTTHQIDNCTEGCVV 269
BLAST of DY271412 vs. ExPASy Swiss-Prot
Match: PUS6_ORYSJ (RNA pseudourine synthase 6, chloroplastic OS=Oryza sativa subsp. japonica GN=Os07g0660400 PE=2 SV=1) HSP 1 Score: 285.034 bits (728), Expect = 4.224e-76 Identity = 144/233 (61.80%), Postives = 170/233 (72.96%), Query Frame = 1 Query: 247 PSSYGYPEYHRLLPCPSQNCPPRVEHLVVSEGGPVLEYICRELNLPPLFVADLIHFGAVYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWKSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTILRGTPLRMDNCPKGWVVLPPNSGVLLQFXXXXXXXXXXXXFTLALTAAP 945 P++ YP Y RLLPCP Q+ PPR+EHLV E +++I R L LPPL+VADLI FGAVYYALV P+PP A PE +R+F+EVT+PSVL +R SIKGKTVREAQKTFR+T +Q +EAGTYLRVHVHPKRFPRCY+IDWKSR+IAVT+++VVLDKPA TSVGG TDNIEESC F SRALGL T ++DNC +G VVL F + LALT AP Sbjct: 66 PATAAYPVYGRLLPCPLQDDPPRIEHLVAREDEVAVDFISRSLTLPPLYVADLIKFGAVYYALVAPQPPPHAAPEHVRIFREVTEPSVLCRRKSIKGKTVREAQKTFRVTDPNQRLEAGTYLRVHVHPKRFPRCYEIDWKSRVIAVTDNYVVLDKPAATSVGGATDNIEESCVVFTSRALGLETPLMTTHQIDNCSEGCVVLSKTKEFCSVFHGMIREKQVNKRY-LALTTAP 297 The following BLAST results are available for this feature:
BLAST of DY271412 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 2
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >DY271412 ID=DY271412; Name=DY271412; organism=Citrus clementina; type=EST; length=952bpback to top |