DY271412

Overview
NameDY271412
Unique NameDY271412
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length952
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271412 vs. ExPASy Swiss-Prot
Match: PUS6_ARATH (RNA pseudourine synthase 6, chloroplastic OS=Arabidopsis thaliana GN=At4g21770 PE=2 SV=1)

HSP 1 Score: 313.923 bits (803), Expect = 8.491e-85
Identity = 167/274 (60.95%), Postives = 203/274 (74.09%), Query Frame = 1
Query:   34 SSIFTNNGRSLGAPVSLLRTLASTHASCHRNIYKSNVVLS-FSSSNRNFVCESWKRHVFTHXXXXXXXXXXXPSSYGYPEYHRLLPCPSQNCPPRVEHLVVSEGGPVL-EYICRELNLPPLFVADLIHFGAVYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWKSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTILRGTPLRMDNCPKGWVV 849
            S   T   R+L APVSLLRTLAST  +    +++SN     F SS + F C S  +                 S+ GY EY+RL+PCP+ N PPR+EH+VV E   ++ E+I ++L+LPPL+VADLI FGAV+YALVCPKPP TATPE++ +F+EVT PSVL KRSSIKGKTVREAQKTFR+TH +Q  EAGTYLRVHVHPKR PRCY+IDWKSRI+AVT+S+V+LDKPAGT+VGGTTDNIEESCATFASRAL L     T  ++DNC +G VV
Sbjct:    3 SPALTGGYRNLTAPVSLLRTLASTRVTTP--LFRSNKHSPRFISSPKRFTCLSLLK-----TDSQNQTTLSSSSNSGYHEYNRLMPCPAYNLPPRIEHMVVLEDDVLVSEFISKQLDLPPLYVADLIRFGAVHYALVCPKPPPTATPEEIILFEEVTSPSVLKKRSSIKGKTVREAQKTFRVTHTNQYAEAGTYLRVHVHPKRSPRCYEIDWKSRIVAVTDSYVILDKPAGTTVGGTTDNIEESCATFASRALDLPEPLKTTHQIDNCTEGCVV 269          
BLAST of DY271412 vs. ExPASy Swiss-Prot
Match: PUS6_ORYSJ (RNA pseudourine synthase 6, chloroplastic OS=Oryza sativa subsp. japonica GN=Os07g0660400 PE=2 SV=1)

HSP 1 Score: 285.034 bits (728), Expect = 4.224e-76
Identity = 144/233 (61.80%), Postives = 170/233 (72.96%), Query Frame = 1
Query:  247 PSSYGYPEYHRLLPCPSQNCPPRVEHLVVSEGGPVLEYICRELNLPPLFVADLIHFGAVYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWKSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTILRGTPLRMDNCPKGWVVLPPNSGVLLQFXXXXXXXXXXXXFTLALTAAP 945
            P++  YP Y RLLPCP Q+ PPR+EHLV  E    +++I R L LPPL+VADLI FGAVYYALV P+PP  A PE +R+F+EVT+PSVL +R SIKGKTVREAQKTFR+T  +Q +EAGTYLRVHVHPKRFPRCY+IDWKSR+IAVT+++VVLDKPA TSVGG TDNIEESC  F SRALGL     T  ++DNC +G VVL         F            + LALT AP
Sbjct:   66 PATAAYPVYGRLLPCPLQDDPPRIEHLVAREDEVAVDFISRSLTLPPLYVADLIKFGAVYYALVAPQPPPHAAPEHVRIFREVTEPSVLCRRKSIKGKTVREAQKTFRVTDPNQRLEAGTYLRVHVHPKRFPRCYEIDWKSRVIAVTDNYVVLDKPAATSVGGATDNIEESCVVFTSRALGLETPLMTTHQIDNCSEGCVVLSKTKEFCSVFHGMIREKQVNKRY-LALTTAP 297          
The following BLAST results are available for this feature:
BLAST of DY271412 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PUS6_ARATH8.491e-8560.95RNA pseudourine synthase 6, chloroplastic OS=Arabi... [more]
PUS6_ORYSJ4.224e-7661.80RNA pseudourine synthase 6, chloroplastic OS=Oryza... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP9YO10FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271412 ID=DY271412; Name=DY271412; organism=Citrus clementina; type=EST; length=952bp
CGGGATCCCGGGTAGATGAGCTCCGTGAGCTTCTCTTCGATCTTCACAAA
CAATGGCCGGAGTTTGGGTGCACCGGTATCCCTCCTGCGCACGTTAGCAT
CAACACACGCATCTTGTCATAGAAATATCTATAAGAGCAATGTTGTTTTA
TCTTTCTCTTCAAGTAACAGAAATTTTGTTTGCGAATCCTGGAAACGACA
TGTATTCACTCACACAGACACAACCGCTACTGCTGCTGCCGCAACTCCTT
CGTCTTATGGCTATCCTGAATATCATCGCTTGCTTCCATGCCCCTCACAG
AACTGTCCACCAAGAGTTGAACATTTAGTTGTTTCAGAAGGAGGGCCTGT
TCTAGAATATATCTGTAGAGAACTGAATCTTCCCCCTCTGTTTGTTGCAG
ATCTTATCCATTTTGGAGCTGTTTATTATGCCCTTGTATGTCCAAAACCT
CCTCTAACTGCAACTCCTGAGCAGATGAGGGTATTTAAAGAAGTTACGGA
TCCATCAGTTCTCAGTAAAAGATCTTCTATCAAAGGAAAGACAGTACGAG
AAGCACAAAAAACGTTTCGTATAACTCATGTGGACCAGATTGTTGAAGCC
GGAACATACTTGCGTGTGCATGTACACCCAAAGCGATTCCCAAGGTGCTA
TGACATTGACTGGAAATCGAGAATCATAGCAGTGACTGAATCCCATGTGG
TTTTGGACAAACCGGCTGGGACATCTGTGGGAGGAACCACAGACAACATA
GAAGAAAGTTGTGCAACATTTGCCTCTCGTGCCTTGGGATTAACAATCCT
CCGAGGAACCCCCCTCAGAATGGATAATTGCCCAAAGGGCTGGGTTGTGT
TACCCCCGAACTCAGGAGTACTGCTCCAATTTTCCCACAAAAAATCAAAA
AAAAAAAGGGGAAAAAGCTTTACCCTGGCCCTAACTGCGGCCCCCCCTGC
CA
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