DY271440

Overview
NameDY271440
Unique NameDY271440
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length918
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10596 contig Ccv1_Contig10596:266..1184. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DY271440 vs. ExPASy Swiss-Prot
Match: RAC1_BETVU (Rac-like GTP-binding protein RHO1 OS=Beta vulgaris GN=RHO1 PE=2 SV=1)

HSP 1 Score: 353.984 bits (907), Expect = 7.026e-97
Identity = 174/179 (97.21%), Postives = 177/179 (98.88%), Query Frame = 2 
Query:  191 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIKFALQ 727
            MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNG+TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPI+LVGTKLDLRDDKQFFIDHPGAVPI+TAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIK  LQ
Sbjct:    1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIKVVLQ 179
[Close]
BLAST of DY271440 vs. ExPASy Swiss-Prot
Match: RHO1_PEA (Rac-like GTP-binding protein RHO1 OS=Pisum sativum GN=RHO1 PE=2 SV=1)

HSP 1 Score: 350.132 bits (897), Expect = 1.015e-95
Identity = 172/179 (96.09%), Postives = 176/179 (98.32%), Query Frame = 2 
Query:  191 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIKFALQ 727
            MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF+DHPGAVPI+TAQGEELRKLI APAYIECSSK+QQNVKAVFDAAI+  LQ
Sbjct:    1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFVDHPGAVPITTAQGEELRKLINAPAYIECSSKSQQNVKAVFDAAIRVVLQ 179
[Close]
BLAST of DY271440 vs. ExPASy Swiss-Prot
Match: RAC1_ARATH (Rac-like GTP-binding protein ARAC1 OS=Arabidopsis thaliana GN=ARAC1 PE=2 SV=1)

HSP 1 Score: 348.977 bits (894), Expect = 2.260e-95
Identity = 170/179 (94.97%), Postives = 176/179 (98.32%), Query Frame = 2 
Query:  191 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIKFALQ 727
            MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNG+TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPI+LVGTKLDLRDDKQFFIDHPGAVPI+TAQGEEL+KLIGAPAYIECSSKTQ+NVK VFDAAI+  LQ
Sbjct:    1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTAQGEELKKLIGAPAYIECSSKTQENVKGVFDAAIRVVLQ 179
[Close]
BLAST of DY271440 vs. ExPASy Swiss-Prot
Match: RAC11_ARATH (Rac-like GTP-binding protein ARAC11 OS=Arabidopsis thaliana GN=ARAC11 PE=1 SV=2)

HSP 1 Score: 348.591 bits (893), Expect = 2.952e-95
Identity = 170/179 (94.97%), Postives = 175/179 (97.77%), Query Frame = 2 
Query:  191 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIKFALQ 727
            MSASRF+KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPI+LVGTKLDLRDDKQFFIDHPGAVPI+TAQGEELRK IGAP YIECSSKTQ+NVKAVFDAAI+  LQ
Sbjct:    1 MSASRFVKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKQIGAPTYIECSSKTQENVKAVFDAAIRVVLQ 179
[Close]
BLAST of DY271440 vs. ExPASy Swiss-Prot
Match: RAC5_ORYSJ (Rac-like GTP-binding protein 5 OS=Oryza sativa subsp. japonica GN=RAC5 PE=2 SV=2)

HSP 1 Score: 348.206 bits (892), Expect = 3.856e-95
Identity = 170/179 (94.97%), Postives = 176/179 (98.32%), Query Frame = 2 
Query:  191 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIKFALQ 727
            MSASRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVV+GSTVNLGLWDTAGQEDYNRLRPLSYRGADVF+LAFSLISKASYENVSKKWIPEL+HYAPGVPIILVGTKLDLRDDKQFF+DHPGAVPISTAQGEELRKLIGA AYIECSSKTQQN+KAVFDAAIK  LQ
Sbjct:    1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVSKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFVDHPGAVPISTAQGEELRKLIGAAAYIECSSKTQQNIKAVFDAAIKVVLQ 179
[Close]
BLAST of DY271440 vs. ExPASy Swiss-Prot
Match: RAC6_ARATH (Rac-like GTP-binding protein ARAC6 OS=Arabidopsis thaliana GN=ARAC6 PE=1 SV=2)

HSP 1 Score: 345.895 bits (886), Expect = 1.913e-94
Identity = 168/179 (93.85%), Postives = 175/179 (97.77%), Query Frame = 2 
Query:  191 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIKFALQ 727
            MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNG+TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPI+LVGTKLDLRDDKQFFIDHPGAVPI+T QGEEL+KLIGAPAYIECSSK+Q+NVK VFDAAI+  LQ
Sbjct:    1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVLQ 179
[Close]
BLAST of DY271440 vs. ExPASy Swiss-Prot
Match: RAC1_LOTJA (Rac-like GTP-binding protein RAC1 OS=Lotus japonicus GN=RAC1 PE=2 SV=1)

HSP 1 Score: 344.739 bits (883), Expect = 4.263e-94
Identity = 169/179 (94.41%), Postives = 174/179 (97.21%), Query Frame = 2 
Query:  191 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIKFALQ 727
            MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVV+GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYEN++KKWIPEL+HYAPGVPIILVGTKLDLRDDK F  DHPGAVPI+TAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIK  LQ
Sbjct:    1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENIAKKWIPELRHYAPGVPIILVGTKLDLRDDKHFLADHPGAVPITTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIKVVLQ 179
[Close]
BLAST of DY271440 vs. ExPASy Swiss-Prot
Match: RAC3_ARATH (Rac-like GTP-binding protein ARAC3 OS=Arabidopsis thaliana GN=ARAC3 PE=1 SV=1)

HSP 1 Score: 344.354 bits (882), Expect = 5.567e-94
Identity = 165/179 (92.18%), Postives = 176/179 (98.32%), Query Frame = 2 
Query:  191 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIKFALQ 727
            MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANV+V+G+T+NLGLWDTAGQEDYNRLRPLSYRGADVF+LAFSL+SKASYENVSKKW+PEL+HYAPGVPIILVGTKLDLRDDKQFF +HPGAVPISTAQGEEL+KLIGAPAYIECS+KTQQNVKAVFDAAIK  LQ
Sbjct:    1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVIVDGNTINLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLVSKASYENVSKKWVPELRHYAPGVPIILVGTKLDLRDDKQFFAEHPGAVPISTAQGEELKKLIGAPAYIECSAKTQQNVKAVFDAAIKVVLQ 179
[Close]
BLAST of DY271440 vs. ExPASy Swiss-Prot
Match: RAC5_ARATH (Rac-like GTP-binding protein ARAC5 OS=Arabidopsis thaliana GN=ARAC5 PE=1 SV=1)

HSP 1 Score: 342.813 bits (878), Expect = 1.620e-93
Identity = 167/179 (93.30%), Postives = 175/179 (97.77%), Query Frame = 2 
Query:  191 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIKFALQ 727
            MSASRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVV+G+TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENV+KKWIPEL+HYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPI+T QGEEL+KLIG+P YIECSSKTQQNVKAVFDAAIK  LQ
Sbjct:    1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVFDAAIKVVLQ 179
[Close]
BLAST of DY271440 vs. ExPASy Swiss-Prot
Match: RAC6_ORYSJ (Rac-like GTP-binding protein 6 OS=Oryza sativa subsp. japonica GN=RAC6 PE=2 SV=1)

HSP 1 Score: 341.658 bits (875), Expect = 3.609e-93
Identity = 167/179 (93.30%), Postives = 173/179 (96.65%), Query Frame = 2 
Query:  191 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIKFALQ 727
            MSASRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVV+G+TVNLGLWDTAGQEDYNRLRPLSYRGADVF+LAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF+DHPGAVPI+TAQGEELRK IGAP YIECSSKTQ NVK VFDAAIK  LQ
Sbjct:    1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFVDHPGAVPITTAQGEELRKQIGAPYYIECSSKTQLNVKGVFDAAIKVVLQ 179
The following BLAST results are available for this feature:
BLAST of DY271440 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAC1_BETVU7.026e-9797.21Rac-like GTP-binding protein RHO1 OS=Beta vulgaris... [more]
RHO1_PEA1.015e-9596.09Rac-like GTP-binding protein RHO1 OS=Pisum sativum... [more]
RAC1_ARATH2.260e-9594.97Rac-like GTP-binding protein ARAC1 OS=Arabidopsis ... [more]
RAC11_ARATH2.952e-9594.97Rac-like GTP-binding protein ARAC11 OS=Arabidopsis... [more]
RAC5_ORYSJ3.856e-9594.97Rac-like GTP-binding protein 5 OS=Oryza sativa sub... [more]
RAC6_ARATH1.913e-9493.85Rac-like GTP-binding protein ARAC6 OS=Arabidopsis ... [more]
RAC1_LOTJA4.263e-9494.41Rac-like GTP-binding protein RAC1 OS=Lotus japonic... [more]
RAC3_ARATH5.567e-9492.18Rac-like GTP-binding protein ARAC3 OS=Arabidopsis ... [more]
RAC5_ARATH1.620e-9393.30Rac-like GTP-binding protein ARAC5 OS=Arabidopsis ... [more]
RAC6_ORYSJ3.609e-9393.30Rac-like GTP-binding protein 6 OS=Oryza sativa sub... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YP22FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271440 ID=DY271440; Name=DY271440; organism=Citrus clementina; type=EST; length=918bp
CGAAGATTGGTTCGCTCAACGAACGCTTCAACGGCATTATTTCCCGGCCG
AAACAAGCAGATGATGGCTAATTGAAGTTACGCTTGCGATCGCGGTTCTC
CTCAGGTGTTGGGATCTGAGGGTTGCTTGTTCTTTTCTCTGAGAGTTTAT
ATTTTGGTAACTAAAAAGCCACTGTCTTAAAAAAAAAAAAATGAGCGCAT
CAAGGTTTATTAAGTGCGTGACGGTAGGCGATGGAGCTGTGGGTAAAACT
TGTTTGCTGATTTCTTACACCAGCAACACTTTCCCTACGGATTATGTGCC
AACTGTGTTTGATAATTTCAGTGCAAATGTGGTTGTCAATGGGAGCACGG
TTAATCTTGGATTATGGGATACTGCTGGACAAGAGGATTATAACAGATTA
AGACCTTTAAGTTACCGTGGTGCAGATGTTTTCATTCTTGCATTCTCTCT
TATTAGCAAAGCAAGTTATGAAAATGTATCCAAGAAGTGGATTCCAGAGT
TGAAACATTATGCACCTGGTGTGCCAATAATTCTTGTTGGAACAAAGCTT
GATCTTCGGGATGATAAGCAGTTCTTCATTGATCATCCAGGTGCCGTGCC
CATTAGTACAGCTCAGGGGGAGGAGCTGAGGAAGTTGATTGGTGCACCTG
CTTACATTGAATGCAGTTCAAAAACACAGCAGAATGTGAAGGCAGTATTT
GATGCAGCCATCAAGTTTGCCCTCCAACCCCCAAAGACGAAAAAAAAAAA
GAATAAACCACAAAAGGCCGGCTCTATATTGTGATTGAAATTAGGTGTAA
AAAAATTATGAACCTCTGTCCTTTCTCAATTCCCCCCTCATCTTTCTTCC
TTTGGTCTGGAAAAAAATTCCATTTGACAAACTGGGGAGGATCCCCCCGG
GAAAACCTCAGGGGGTTT
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