DY302512
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY302512 vs. ExPASy Swiss-Prot
Match: RBM42_BOVIN (RNA-binding protein 42 OS=Bos taurus GN=RBM42 PE=2 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 3.032e-17 Identity = 43/71 (60.56%), Postives = 52/71 (73.24%), Query Frame = 3 Query: 369 EHKAETKKKSIPRK-------AAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKV 560 E +E KKK P K AAG +WEDP+L EW +D+R+FCGDLGNEVNDD+L++AFSRFPSF AKV Sbjct: 310 EPLSEDKKKGKPEKLKRCIRTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKV 380
BLAST of DY302512 vs. ExPASy Swiss-Prot
Match: RBM42_RAT (RNA-binding protein 42 OS=Rattus norvegicus GN=Rbm42 PE=1 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 3.960e-17 Identity = 43/71 (60.56%), Postives = 51/71 (71.83%), Query Frame = 3 Query: 369 EHKAETKKKSIPRK-------AAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKV 560 E E KKK P K AAG +WEDP+L EW +D+R+FCGDLGNEVNDD+L++AFSRFPSF AKV Sbjct: 336 EPLGEDKKKGKPEKLKRCIRTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKV 406
BLAST of DY302512 vs. ExPASy Swiss-Prot
Match: RBM42_MOUSE (RNA-binding protein 42 OS=Mus musculus GN=Rbm42 PE=1 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 3.960e-17 Identity = 43/71 (60.56%), Postives = 51/71 (71.83%), Query Frame = 3 Query: 369 EHKAETKKKSIPRK-------AAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKV 560 E E KKK P K AAG +WEDP+L EW +D+R+FCGDLGNEVNDD+L++AFSRFPSF AKV Sbjct: 336 EPLGEDKKKGKPEKLKRCIRTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKV 406
BLAST of DY302512 vs. ExPASy Swiss-Prot
Match: RBM42_HUMAN (RNA-binding protein 42 OS=Homo sapiens GN=RBM42 PE=1 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 3.960e-17 Identity = 43/71 (60.56%), Postives = 51/71 (71.83%), Query Frame = 3 Query: 369 EHKAETKKKSIPRK-------AAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKV 560 E E KKK P K AAG +WEDP+L EW +D+R+FCGDLGNEVNDD+L++AFSRFPSF AKV Sbjct: 342 EPLGEDKKKGKPEKLKRCIRTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKV 412
BLAST of DY302512 vs. ExPASy Swiss-Prot
Match: RBM42_XENLA (RNA-binding protein 42 OS=Xenopus laevis GN=rbm42 PE=2 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 2.566e-16 Identity = 42/91 (46.15%), Postives = 59/91 (64.84%), Query Frame = 3 Query: 309 QTITPEALESVKAALASSDIEHKAETKKKSIPRK-------AAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKV 560 +T+ ++ ++ +E E KKK+ P K AAG +WED +L EW +D+R+FCGDLGNEVNDD+L++AFSR+PSF AKV Sbjct: 234 ETVIGPSMPEIEPVQPEVVLEPVQEDKKKAKPEKLKRCIRTAAGTSWEDQSLLEWEPDDFRIFCGDLGNEVNDDILARAFSRYPSFLRAKV 324
BLAST of DY302512 vs. ExPASy Swiss-Prot
Match: RBM42_XENTR (RNA-binding protein 42 OS=Xenopus tropicalis GN=rbm42 PE=2 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 4.378e-16 Identity = 41/72 (56.94%), Postives = 52/72 (72.22%), Query Frame = 3 Query: 366 IEHKAETKKKSIPRK-------AAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKV 560 +E E KKK+ P K AAG +WED +L EW +D+R+FCGDLGNEVNDD+L++AFSR+PSF AKV Sbjct: 253 LEPVQEDKKKTKPEKLKRCIRTAAGTSWEDQSLLEWESDDFRIFCGDLGNEVNDDILARAFSRYPSFLRAKV 324
BLAST of DY302512 vs. ExPASy Swiss-Prot
Match: RBM42_DANRE (RNA-binding protein 42 OS=Danio rerio GN=rbm42 PE=2 SV=2) HSP 1 Score: 85.8853 bits (211), Expect = 5.718e-16 Identity = 40/80 (50.00%), Postives = 54/80 (67.50%), Query Frame = 3 Query: 321 PEALESVKAALASSDIEHKAETKKKSIPRKAAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKV 560 PE + ++ D + + K K R AAG +WED +L EW +D+R+FCGDLGNEVNDD+L++AFSR+PSF AKV Sbjct: 255 PEPVHVEPVDTSTEDKKKGKQEKVKKCIRVAAGVSWEDTSLLEWETDDFRIFCGDLGNEVNDDILARAFSRYPSFLKAKV 334
BLAST of DY302512 vs. ExPASy Swiss-Prot
Match: YDB2_SCHPO (Uncharacterized RNA-binding protein C22E12.02 OS=Schizosaccharomyces pombe GN=SPAC22E12.02 PE=2 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 1.722e-12 Identity = 33/57 (57.89%), Postives = 41/57 (71.93%), Query Frame = 3 Query: 390 KKSIPRKAAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKV 560 K ++ RKA GQ WEDPTL EW N +RLF G+LGN+VND+ L +AFS +PS KV Sbjct: 5 KTTVVRKAGGQVWEDPTLLEWDPNHFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKV 61 The following BLAST results are available for this feature:
BLAST of DY302512 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 8
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >DY302512 ID=DY302512; Name=DY302512; organism=Citrus clementina; type=EST; length=1286bpback to top |