DY302512

Overview
NameDY302512
Unique NameDY302512
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1286
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY302512 vs. ExPASy Swiss-Prot
Match: RBM42_BOVIN (RNA-binding protein 42 OS=Bos taurus GN=RBM42 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.032e-17
Identity = 43/71 (60.56%), Postives = 52/71 (73.24%), Query Frame = 3
Query:  369 EHKAETKKKSIPRK-------AAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKV 560
            E  +E KKK  P K       AAG +WEDP+L EW  +D+R+FCGDLGNEVNDD+L++AFSRFPSF  AKV
Sbjct:  310 EPLSEDKKKGKPEKLKRCIRTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKV 380          
BLAST of DY302512 vs. ExPASy Swiss-Prot
Match: RBM42_RAT (RNA-binding protein 42 OS=Rattus norvegicus GN=Rbm42 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 3.960e-17
Identity = 43/71 (60.56%), Postives = 51/71 (71.83%), Query Frame = 3
Query:  369 EHKAETKKKSIPRK-------AAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKV 560
            E   E KKK  P K       AAG +WEDP+L EW  +D+R+FCGDLGNEVNDD+L++AFSRFPSF  AKV
Sbjct:  336 EPLGEDKKKGKPEKLKRCIRTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKV 406          
BLAST of DY302512 vs. ExPASy Swiss-Prot
Match: RBM42_MOUSE (RNA-binding protein 42 OS=Mus musculus GN=Rbm42 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 3.960e-17
Identity = 43/71 (60.56%), Postives = 51/71 (71.83%), Query Frame = 3
Query:  369 EHKAETKKKSIPRK-------AAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKV 560
            E   E KKK  P K       AAG +WEDP+L EW  +D+R+FCGDLGNEVNDD+L++AFSRFPSF  AKV
Sbjct:  336 EPLGEDKKKGKPEKLKRCIRTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKV 406          
BLAST of DY302512 vs. ExPASy Swiss-Prot
Match: RBM42_HUMAN (RNA-binding protein 42 OS=Homo sapiens GN=RBM42 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 3.960e-17
Identity = 43/71 (60.56%), Postives = 51/71 (71.83%), Query Frame = 3
Query:  369 EHKAETKKKSIPRK-------AAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKV 560
            E   E KKK  P K       AAG +WEDP+L EW  +D+R+FCGDLGNEVNDD+L++AFSRFPSF  AKV
Sbjct:  342 EPLGEDKKKGKPEKLKRCIRTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKV 412          
BLAST of DY302512 vs. ExPASy Swiss-Prot
Match: RBM42_XENLA (RNA-binding protein 42 OS=Xenopus laevis GN=rbm42 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 2.566e-16
Identity = 42/91 (46.15%), Postives = 59/91 (64.84%), Query Frame = 3
Query:  309 QTITPEALESVKAALASSDIEHKAETKKKSIPRK-------AAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKV 560
            +T+   ++  ++       +E   E KKK+ P K       AAG +WED +L EW  +D+R+FCGDLGNEVNDD+L++AFSR+PSF  AKV
Sbjct:  234 ETVIGPSMPEIEPVQPEVVLEPVQEDKKKAKPEKLKRCIRTAAGTSWEDQSLLEWEPDDFRIFCGDLGNEVNDDILARAFSRYPSFLRAKV 324          
BLAST of DY302512 vs. ExPASy Swiss-Prot
Match: RBM42_XENTR (RNA-binding protein 42 OS=Xenopus tropicalis GN=rbm42 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 4.378e-16
Identity = 41/72 (56.94%), Postives = 52/72 (72.22%), Query Frame = 3
Query:  366 IEHKAETKKKSIPRK-------AAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKV 560
            +E   E KKK+ P K       AAG +WED +L EW  +D+R+FCGDLGNEVNDD+L++AFSR+PSF  AKV
Sbjct:  253 LEPVQEDKKKTKPEKLKRCIRTAAGTSWEDQSLLEWESDDFRIFCGDLGNEVNDDILARAFSRYPSFLRAKV 324          
BLAST of DY302512 vs. ExPASy Swiss-Prot
Match: RBM42_DANRE (RNA-binding protein 42 OS=Danio rerio GN=rbm42 PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 5.718e-16
Identity = 40/80 (50.00%), Postives = 54/80 (67.50%), Query Frame = 3
Query:  321 PEALESVKAALASSDIEHKAETKKKSIPRKAAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKV 560
            PE +       ++ D +   + K K   R AAG +WED +L EW  +D+R+FCGDLGNEVNDD+L++AFSR+PSF  AKV
Sbjct:  255 PEPVHVEPVDTSTEDKKKGKQEKVKKCIRVAAGVSWEDTSLLEWETDDFRIFCGDLGNEVNDDILARAFSRYPSFLKAKV 334          
BLAST of DY302512 vs. ExPASy Swiss-Prot
Match: YDB2_SCHPO (Uncharacterized RNA-binding protein C22E12.02 OS=Schizosaccharomyces pombe GN=SPAC22E12.02 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.722e-12
Identity = 33/57 (57.89%), Postives = 41/57 (71.93%), Query Frame = 3
Query:  390 KKSIPRKAAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKV 560
            K ++ RKA GQ WEDPTL EW  N +RLF G+LGN+VND+ L +AFS +PS    KV
Sbjct:    5 KTTVVRKAGGQVWEDPTLLEWDPNHFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKV 61          
The following BLAST results are available for this feature:
BLAST of DY302512 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
RBM42_BOVIN3.032e-1760.56RNA-binding protein 42 OS=Bos taurus GN=RBM42 PE=2... [more]
RBM42_RAT3.960e-1760.56RNA-binding protein 42 OS=Rattus norvegicus GN=Rbm... [more]
RBM42_MOUSE3.960e-1760.56RNA-binding protein 42 OS=Mus musculus GN=Rbm42 PE... [more]
RBM42_HUMAN3.960e-1760.56RNA-binding protein 42 OS=Homo sapiens GN=RBM42 PE... [more]
RBM42_XENLA2.566e-1646.15RNA-binding protein 42 OS=Xenopus laevis GN=rbm42 ... [more]
RBM42_XENTR4.378e-1656.94RNA-binding protein 42 OS=Xenopus tropicalis GN=rb... [more]
RBM42_DANRE5.718e-1650.00RNA-binding protein 42 OS=Danio rerio GN=rbm42 PE=... [more]
YDB2_SCHPO1.722e-1257.89Uncharacterized RNA-binding protein C22E12.02 OS=S... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAQ3YC17RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY302512 ID=DY302512; Name=DY302512; organism=Citrus clementina; type=EST; length=1286bp
CAAACCCCAATTCCCAAATCTATCAAATCCGACGGCGTTTCGTTTCTCCC
ATGTCGATGCCGCAATCGTCTTCTTCCTCCGGTCAATTCACATACGCAGC
GGCGCCGGCGGCACCAACAACAGCGAATAGTTCATACTTTCCCTTACCAT
TCCACCTCCAGCAAACCGACCCGACGGCCGTTTCTCAGTACCCACCGCCC
GCTGCCTATCCCGCCCCCGTTGTCCCCTCTGTTTATGCCGCCCCCGTCGC
CCCCGTTTACTCTCTCCCCCAATACCACCAGGCTCAACAGTTATTTCAAA
GGGATGCACAGACGATTACGCCTGAAGCACTTGAGAGTGTGAAAGCTGCA
CTTGCAAGCAGTGATATTGAGCACAAAGCAGAAACTAAAAAGAAATCAAT
ACCTCGTAAAGCAGCTGGGCAGACTTGGGAGGATCCAACGCTTGCAGAGT
GGCCAGAAAATGACTATCGCCTATTCTGCGGTGATCTTGGTAATGAGGTG
AATGATGATGTTCTTTCTAAAGCATTTTCACGATTTCCTTCCTTTAATAT
GGCCAAAGTAAGTTTCTGTTTCACTTGATTACTTCTGTACTTGTATTATA
AGCATTGTGCACTTGCTGTGAAGTTTTTTATTTCCTCTTCAGATTTTTGT
TTGAAGCGCACAGAGAAGTTATATTATGTTTTGTGTACTTTAAATTGGAA
TCGACATCTGACGCATGAATTGGTTAAATTTTTACCTGATGAATTATAGC
CAGGGAGAGTTGATTTGATCAACTTGGAATCAGGGTGTGAGAAAAAAACC
GCACCGGCAAACAAAGGGAATAGGGGTTTATTATCTTTGGCAACCCTTCC
GAATATGGCCGCCCCCTTAAAACAAATGAATGGTAAATATGTTGGAAATC
CCACCCAAAAAAACTGCCGAAAAACCCATTGCGAAGAAAGGCACCAATTT
TGGAGGCTCTTGAAACAACCCAACAAACCTATATCAAAAGAACACACAAC
GTTTTCCAAGAAAGAGTGGTCTGGGAACAAAGTACTATTGGGAAACCTTT
ATGTAACCCACAAACTTTTTGCCAGAACAACTGCAACCCAAGATTACCAC
CCAAGCATGAAAACTTCAAAGACCCTGCCATTTCCCTCCGGCTCTTCCCA
AACCTTCTTTCTTCAGTCTCAAACACCACCCCCCCATCCTTGGCTAAAAC
CAAAAATCACAAAGAAACCAACCCACAACCAAACCACCACCAAAACCCAC
AAAAAAACAACCCCGTTCCAAGATACAAGTACAAGG
back to top