DY302677

Overview
NameDY302677
Unique NameDY302677
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1296
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY302677 vs. ExPASy Swiss-Prot
Match: Y1491_ARATH (DUF246 domain-containing protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 2.110e-34
Identity = 82/197 (41.62%), Postives = 116/197 (58.88%), Query Frame = 3 
Query:  189 ELWSPLVNQGWRPCAESTGTSSLP-KKSRGYVQVFLDGGLNQQRMGICDAVAVAKILNATLVLPHLEVNPVWRDSSSFADIFDVDHFISSLRDEISIVKELPSEY-SWSSREYYATGIRDTRIKTAPVHASANWYLENVLPILQSYGIAAIAPFSHRLAFDXLPTNIQHLRCKVNFQALVFVPPIRKLGKTIVHLLR 773
            ELW    + GWRP +        P K++ GY++V  +GGLNQQR  IC+AV  A+I+NATLVLP L+ N  W D S F  I+DV+HFI +L+ ++ IV ++P  + +  +++  A  IR  R   AP+     WYL   L  ++ +    + PFSHRLA +      Q LRC+VN+ AL F P I KL ++IV  LR
Sbjct:   61 ELWESAKSGGWRPSSAPRSDWPPPTKETNGYLRVRCNGGLNQQRSAICNAVLAARIMNATLVLPELDANSFWHDDSGFQGIYDVEHFIETLKYDVKIVGKIPDVHKNGKTKKIKAFQIRPPR--DAPI----EWYLTTALKAMREHSAIYLTPFSHRLAEEIDNPEYQRLRCRVNYHALRFKPHIMKLSESIVDKLR 251
The following BLAST results are available for this feature:
BLAST of DY302677 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y1491_ARATH2.110e-3441.62DUF246 domain-containing protein At1g04910 OS=Arab... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAQ3YK05RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY302677 ID=DY302677; Name=DY302677; organism=Citrus clementina; type=EST; length=1296bp
ATCGGACACAGCGAATGGCTTTCGCCGGTCTCTTCGTAATTCTCTTACCA
ATTTTCGTCCCAAATCTGTTCGAACCGCTGGGCCGAGCCTCGCCGACAAT
GTTCTCCGAGTGGAATGCGCCACAACCCAGGCACTCGTCTCTGCTGAAGA
TCGCTTTACATAGACAGATTCCGACCGAACAACAATCTGAACTCTGGTCT
CCGTTGGTCAACCAAGGATGGAGACCCTGTGCTGAATCTACAGGTACTTC
TTCTTTGCCAAAGAAGTCTCGAGGTTATGTCCAAGTGTTTCTTGATGGTG
GTTTAAATCAGCAGAGAATGGGGATATGCGATGCAGTTGCTGTTGCCAAA
ATATTGAACGCAACCTTGGTGCTGCCGCACCTTGAAGTAAATCCGGTTTG
GCGAGATTCTAGCTCCTTTGCAGATATATTTGATGTAGATCACTTTATTT
CTTCCTTGCGTGACGAAATCTCTATAGTTAAAGAGTTACCTAGTGAATAC
TCTTGGAGCTCTCGGGAGTACTATGCTACTGGTATACGGGATACTAGAAT
TAAAACAGCACCTGTCCACGCTTCTGCCAACTGGTACCTGGAAAATGTCC
TGCCCATATTACAGAGCTATGGCATTGCCGCTATCGCTCCATTCTCTCAT
CGTTTGGCTTTTGACNACTTGCCGACCAATATTCAGCACCTACGGTGTAA
AGTCAACTTTCAAGCTTTAGTTTTTGTTCCCCCTATCAGGAAGTTGGGAA
AAACTATTGTTCATCTCCTCCGTCCCCCTCCAGGCAAAACTTCAGCTTCA
GGGACTGAATTCCCATAAGGGGAGGAAAGGTGAATCCCGAAGTCCCCGGA
ACCTGGAAAAATTCCCCGTGTTAACCTCTTCCCCTTTGATAAACAACTGG
CCCCCCCCATTCCCCCTGGGATTTTTGTGGGCGGGAAAAGCCCAAAAAAC
GGGTCCCTACCAAATAACCGGGAAATAATTTTTGCCCGGCCCGGGTTCCT
TAAACCCCCTCTTCCTCGAAAAGGAATTTAAAATTTCCGGGGCATTTGCC
CCCTTTGACCCCCAAAAAAGATTGGAGTTCCCGCCTCAACGGCTTTGGGG
TTTTCACAAACAGGCAACCTCCCCCTCTCCTTCTCTTCTTCCCACGACGT
TTTTAGGGGTGGAAAGACCTCCACGAGCACTCTTTCCAAACTTAACAACA
GACAATATATTTTTTCCTCCCCCTCTAGATACACAATGCAATACTCCCAA
AGAAAGCCACCTTCTCCTCTCCTCTCTGCCCAAACAAAAGGACACA
back to top