DY302856

Overview
NameDY302856
Unique NameDY302856
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length977
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY302856 vs. ExPASy Swiss-Prot
Match: RPT3_ARATH (Root phototropism protein 3 OS=Arabidopsis thaliana GN=RPT3 PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 2.131e-38
Identity = 86/241 (35.68%), Postives = 136/241 (56.43%), Query Frame = 3
Query:  186 GSRPDTFYTSEAVRSISSEVSSDLIIQVKGTRYLLHKFPLLSKCLRLQRLCSESPESSQHQIVQLPDFPGGVDAFELCAKFCYGITITLSAYNIVAARCAAEYLQMTEDVEKGNLIYKIEVFFNSCILHGWRDSIVTLQSTKAFPLWSEDLGITSRCIEAIASKVLTHPSKVSLSHS-----------------YSRRGRDDISCNGAESPRHKASTKGWWAEDMAELGIDLY*RTMIAIK 857
            G + D F        +++++ SDL++++    + LHK+PLLS+  ++ RL  ES +     I+ L D PGG +AFEL +KFCYG+ + L+A NI   RCAAEYL+MTED+E+GNLI+K E F +  +L  WRDSI+ L+S +    W+E+L I  RC E+IA K  ++P  +  +++                 ++        C+ + +   +     WW ED++ L ID + R + AIK
Sbjct:   32 GVKTDGFELRGQSWFVATDIPSDLLVKIGDMNFHLHKYPLLSRSGKMNRLIYESRDPDP-TILILDDLPGGPEAFELASKFCYGVPVDLTATNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVVLSSWRDSILVLKSCEKLSPWAENLQIVRRCSESIAWKACSNPKGIRWAYTGKAPSPSTTNFAGSSPRWNESKDSSFYCSPSRNTNSQPVPPDWWFEDVSILRIDHFVRVITAIK 271          
BLAST of DY302856 vs. ExPASy Swiss-Prot
Match: NPH3_ORYSJ (Coleoptile phototropism protein 1 OS=Oryza sativa subsp. japonica GN=CPT1 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 1.169e-36
Identity = 89/257 (34.63%), Postives = 135/257 (52.53%), Query Frame = 3
Query:  198 DTFYTSEAVRSISSEVSSDLIIQVKGTRYLLHKFPLLSKCLRLQRLCSESPESSQHQ--------IVQLPDFPGGVDAFELCAKFCYGITITLSAYNIVAARCAAEYLQMTEDVEKGNLIYKIEVFFNSCILHGWRDSIVTLQSTKAFPLWSEDLGITSRCIEAIASKVLTHPSKVSLSHSYSRRG-----------RDDISCNGAESPRHKASTKG------------------WWAEDMAELGIDLY*RTMIAIK 857
            D F   +    ++S++ SDL+++V    + LHK+P++S+  R+ R   ES  + + +        +V++ D PGG  +FEL A+F YG+ + L+A NI   RCAAEYL+MTE++E+GNLI+K E F +  +L  WRDSI  L+S +A   W+E+L I  RC E+IA K   +P  V  +++ +  G           R      G  SPR      G                  WW ED++ L ID + R + AIK
Sbjct:   34 DGFVRRDRSWYVNSDIPSDLLVKVGDVNFYLHKYPMISRSGRMSRAVYESSAADEAEADAAAAVAVVEMGDLPGGAGSFELAARFSYGMAVDLTAANISGLRCAAEYLEMTEEMEEGNLIFKTEAFLSYVVLSSWRDSIAVLKSCEALSPWAENLQIVRRCSESIAWKACANPRGVRWAYTGAGAGSGGARGGPAAIRGGGGSGGTASPRWNVGGGGGGESKESSPSRQAVPPADWWFEDVSVLRIDHFVRVVTAIK 290          
BLAST of DY302856 vs. ExPASy Swiss-Prot
Match: Y1044_ARATH (BTB/POZ domain-containing protein At1g30440 OS=Arabidopsis thaliana GN=At1g30440 PE=1 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 3.403e-36
Identity = 86/237 (36.29%), Postives = 134/237 (56.54%), Query Frame = 3
Query:  168 MKFMKLGSRPDTFYTSEAVRSISSEVSSDLIIQVKGTRYLLHKFPLLSKCLRLQRLCSE-SPESSQHQIVQLPDFPGGVDAFELCAKFCYGITITLSAYNIVAARCAAEYLQMTEDVEKGNLIYKIEVFFNSCILHGWRDSIVTLQSTKAFPLWSEDLGITSRCIEAIASKVLTHPSKVS---LSHSYSRRG-RDDISCNG-AESPRHKASTKGWWAEDMAELGIDLY*RTMIAIKS 860
            M  MKLGS+ D F         ++ + SD++++V    + LHKFPLLS+   ++R  +E S E     ++++ D PGG   FEL AKFCYG+ + L+A N+V  RCAAE+L+MTE+  +GNLI + E FFN  +L  W+DSI  L S      ++++L IT +CIE++A +  T P+      + H    +     +  NG +   R K ++  WW ED + L   L+ R +  ++S
Sbjct:    1 MACMKLGSKSDAFQRQGQAWFCTTGLPSDIVVEVGEMSFHLHKFPLLSRSGVMERRIAEASKEGDDKCLIEISDLPGGDKTFELVAKFCYGVKLELTASNVVYLRCAAEHLEMTEEHGEGNLISQTETFFNQVVLKSWKDSIKALHSCDEVLEYADELNITKKCIESLAMRASTDPNLFGWPVVEHGGPMQSPGGSVLWNGISTGARPKHTSSDWWYEDASMLSFPLFKRLITVMES 237          
BLAST of DY302856 vs. ExPASy Swiss-Prot
Match: Y5880_ARATH (BTB/POZ domain-containing protein At5g48800 OS=Arabidopsis thaliana GN=At5g48800 PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 2.136e-30
Identity = 78/219 (35.62%), Postives = 117/219 (53.42%), Query Frame = 3
Query:  231 ISSEVSSDLIIQVKGTRYLLHKFPLLSKCLRLQRLCSESPESSQHQIVQLPDFPGGVDAFELCAKFCYGITITLSAYNIVAARCAAEYLQMTEDVEKGNLIYKIEVFFNSCILHGWRDSIVTLQSTKAFPLWSEDLGITSRCIEAIASKVLTHPSKVSLSH-SYSRRGRDDISCNGAESPRHKASTKGWWAEDMAELGIDLY*RTMIAIKSGWKDPPQI 884
            I  +V SD+ I+V G  + LHKFPL+S+  R++R+ +E  +S   + V+L + PGG + FEL AKFCYGI   +++ N+    C ++YL+MTE+  K NL  + E +  S +       +  L+ ++     +++L I  RCI+AIASK        S S   YS  GR  +S       +       WW ED++ L IDLY R M A+K     P  I
Sbjct:   37 IFRDVPSDITIEVNGGNFALHKFPLVSRSGRIRRIVAEHRDSDISK-VELLNLPGGAETFELAAKFCYGINFEITSSNVAQLFCVSDYLEMTEEYSKDNLASRTEEYLESIVCKNLEMCVQVLKQSEILLPLADELNIIGRCIDAIASKACAEQIASSFSRLEYSSSGRLHMS----RQVKSSGDGGDWWIEDLSVLRIDLYQRVMNAMKCRGVRPESI 250          
BLAST of DY302856 vs. ExPASy Swiss-Prot
Match: RPT2_ARATH (Root phototropism protein 2 OS=Arabidopsis thaliana GN=RPT2 PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 1.135e-23
Identity = 65/220 (29.55%), Postives = 107/220 (48.64%), Query Frame = 3
Query:  234 SSEVSSDLIIQVKGTRYLLHKFPLLSKCLRLQRLCSESPESSQHQIVQLPDFPGGVDAFELCAKFCYGITITLSAYNIVAARCAAEYLQMTEDVEKGNLIYKIEVFFNSCILHGWRDSIVTLQSTKAFPLWSEDLGITSRCIEAIASKVLTHPSKVSLSHSYSRRGRDDISCNGAESPRHKASTKGWWAEDMAELGIDLY*RTMIAIKSGWKDPPQILKA 893
            S ++ +D++++V    + LHKF L++K   +++L  ES +S   +I  L D PGG + FE  AKFCYG+   ++  N+ A  CAAE+LQMT+     NL  + + F +   L     +IV L+S +     S DLGI  RC++ + +K                      +CN A  P    +   WW E++  L +D +   + ++K     P  +  A
Sbjct:   27 SQDIPTDVVVEVGEANFSLHKFMLVAKSNYIRKLIMESKDSDVTRI-NLSDIPGGPEIFEKAAKFCYGVNFEITVQNVAALHCAAEFLQMTDKYCDNNLAGRTQDFLSQVALSSLSGAIVVLKSCEILLPISRDLGIVRRCVDVVGAK----------------------ACNEAMFPCR--TPPNWWTEELCILDVDFFSDVVSSMKQRGVKPSSLASA 221          
The following BLAST results are available for this feature:
BLAST of DY302856 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RPT3_ARATH2.131e-3835.68Root phototropism protein 3 OS=Arabidopsis thalian... [more]
NPH3_ORYSJ1.169e-3634.63Coleoptile phototropism protein 1 OS=Oryza sativa ... [more]
Y1044_ARATH3.403e-3636.29BTB/POZ domain-containing protein At1g30440 OS=Ara... [more]
Y5880_ARATH2.136e-3035.62BTB/POZ domain-containing protein At5g48800 OS=Ara... [more]
RPT2_ARATH1.135e-2329.55Root phototropism protein 2 OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAQ4YC09RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY302856 ID=DY302856; Name=DY302856; organism=Citrus clementina; type=EST; length=977bp
AAAAACTCTTGGGCCTGGAGAACATCATTTTGGCTGGCTGCTGGATAGAC
TTTTTCTTTGGGGCGGCTTTTAATAGGTTATGAATGAAGTTGGCTTATCT
GAGTCCTTCTGAGCATTTGGTTAAGATATAAACTTAAGCAAGAGAAGAAA
GAGTAGAAGAATCAGTCATGAAGTTCATGAAACTTGGATCTCGGCCTGAT
ACCTTCTACACTTCTGAGGCTGTAAGGTCAATCTCCTCTGAAGTCTCTAG
TGATCTCATAATTCAAGTGAAAGGAACTAGATACTTGCTTCACAAGTTTC
CTCTGTTGTCCAAGTGTTTGCGGCTGCAGAGGCTATGTTCTGAGTCCCCT
GAATCCTCACAACACCAGATAGTCCAACTCCCTGATTTCCCTGGCGGTGT
CGACGCATTTGAACTCTGTGCAAAGTTTTGTTATGGAATTACAATCACTC
TCAGTGCCTACAATATCGTAGCTGCAAGATGTGCTGCCGAATATTTGCAG
ATGACAGAGGATGTTGAGAAGGGGAACTTGATATACAAGATTGAGGTTTT
CTTCAATTCATGCATCCTTCATGGGTGGAGAGATTCCATTGTGACTCTAC
AAAGCACTAAAGCTTTTCCTTTATGGTCTGAGGATCTTGGAATCACGAGC
AGATGCATTGAAGCAATTGCTTCTAAAGTTTTAACTCACCCCTCAAAGGT
GAGCTTATCACATAGTTACTCTAGGAGGGGAAGGGATGATATATCTTGTA
ATGGTGCGGAGAGCCCAAGGCACAAAGCATCAACCAAAGGCTGGTGGGCT
GAAGATATGGCAGAATTAGGCATAGACCTTTATTGAAGAACCATGATAGC
AATTAAATCTGGGTGGAAAGATCCCCCTCAAATCTTGAAGGCGAGGCACT
GAAAATTTATGCCTCTCGATGGGCTACCTAACCTATCGGGAAAATGGACG
TATCAAATAATCACGAAACATCAAAAT
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