DY302991

Overview
NameDY302991
Unique NameDY302991
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length976
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY302991 vs. ExPASy Swiss-Prot
Match: PEX10_ARATH (Peroxisome biogenesis factor 10 OS=Arabidopsis thaliana GN=PEX10 PE=1 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 4.001e-53
Identity = 109/163 (66.87%), Postives = 123/163 (75.46%), Query Frame = 1
Query:  403 GSSRDQSLETIESPSSSAPRVY-SAVSRLKEKLNGLRLYVIRRWPMVLPIVREFLQLVLRANLMFFYFEGLYYHISKRTAGIRYVFIGKPTNQRPRYQILGVFLLIQLCIIAAEGLRRSNLSSIASSVHHTSLGFQQASTGRGLPVLNEEGSLIPSESDKGGW 888
            G S   S   I+ PSSS      S VSRL ++L       I+RWP+VLP+ RE LQLVLRANLM FYFEG YYHISKR +G+RYVFIGK  NQRPRYQILGVFLLIQLCI+AAEGLRRSNLSSI SS+   S+G  Q S GRGLPVLNEEG+LI SE++KG W
Sbjct:  151 GDSHIHSPRMIDLPSSSQVETSTSVVSRLNDRLMRSWHRAIQRWPVVLPVAREVLQLVLRANLMLFYFEGFYYHISKRASGVRYVFIGKQLNQRPRYQILGVFLLIQLCILAAEGLRRSNLSSITSSIQQASIGSYQTSGGRGLPVLNEEGNLITSEAEKGNW 313          

HSP 2 Score: 193.356 bits (490), Expect = 1.731e-48
Identity = 101/140 (72.14%), Postives = 113/140 (80.71%), Query Frame = 3
Query:   48 QREMGS----GETRRFPPAAQPEIMRAAEKDEQYASFIYDACRDAFRQLFGTRVAVAYQSETKLVGQMLYYVLTTGSGQQTLGEEYCDITQVVGPQRLPPTPARRALFIVYQTAVPYIAERI--REQSRSIFRDDRISIF 449
            Q E GS    G  RRFP AAQPEIMRAAEKD+QYASFI++ACRDAFR LFGTR+A+AYQ E KL+GQMLYYVLTTGSGQQTLGEEYCDI QV GP  L PTPARRALFI+YQTAVPYIAERI  R  ++++  D+    F
Sbjct:   11 QDEPGSSGFHGGIRRFPLAAQPEIMRAAEKDDQYASFIHEACRDAFRHLFGTRIALAYQKEMKLLGQMLYYVLTTGSGQQTLGEEYCDIIQVAGPYGLSPTPARRALFILYQTAVPYIAERISTRAATQAVTFDESDEFF 150          
BLAST of DY302991 vs. ExPASy Swiss-Prot
Match: PEX10_YEAST (Peroxisome biogenesis factor 10 OS=Saccharomyces cerevisiae GN=PEX10 PE=1 SV=1)

HSP 1 Score: 53.5286 bits (127), Expect = 2.780e-13
Identity = 36/122 (29.51%), Postives = 57/122 (46.72%), Query Frame = 3
Query:   78 RFPPAAQPEIMRAAEKDEQYASFIYDACRDAFRQLFGTRVAVAYQSETKLVGQMLYYVLTTGSGQQTLGEEYCDITQVVGPQRLPPTPARRALFIVYQTAVPYIAERIREQSRSIFRDDRIS 443
            RFP A  P I++A +KDEQ    +     +  + +       +Y  E  +  ++LY + TTG   +TLGEEY D+T      R     A R   IV+  A P     I +  + I ++++ S
Sbjct:   19 RFPFADAPSIVQAHQKDEQIQGLLIMKVTELCKLIKSQLFVNSYPKELSIFAKLLYLLFTTGRRGRTLGEEYVDLTYT---NRKGTRLAGRLKMIVFAFAYPLCPYFITKLYKKIMKNNKES 137          

HSP 2 Score: 42.3578 bits (98), Expect = 2.780e-13
Identity = 35/122 (28.69%), Postives = 55/122 (45.08%), Query Frame = 1
Query:  538 VLPIVREFLQLVLRANLMFFYFEGLYYHISKRTAGIRYVF----IGKPTNQR----PRYQILGVFLLIQLCIIAAEGLRRSNLSS-------IASSVHHTSLGFQQASTGRGLPVLNEEGSL 858
            V    +  L  +L  ++  FYF+G +Y ISKR  G+RYVF         N R     +Y++LG  LL Q  ++    +  S L S          S+  +S+G Q+ S    +  + +E  L
Sbjct:  145 VAAFCKGLLDFILDVHMTLFYFKGAFYSISKRIFGMRYVFKHILSKNEANFREEGSQKYKVLGYILLAQ-NVMKWYPVLTSTLGSWIYGRKRTNDSITRSSVGLQERSEHESIEGIPKESQL 265          
BLAST of DY302991 vs. ExPASy Swiss-Prot
Match: PEX10_DICDI (Peroxisome biogenesis factor 10 OS=Dictyostelium discoideum GN=pex10 PE=3 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 3.084e-13
Identity = 41/123 (33.33%), Postives = 68/123 (55.28%), Query Frame = 3
Query:   36 NATHQREMGSGETRRFPPAA-QPEIMRAAEKDEQYASFIYDACRDAFRQLFGTRVAVAYQSETKLVGQMLYYVLTTGSGQQTLGEEYCDITQVVGPQ-RLPPTPARRALFIVYQTAVPYIAER 398
            N  +   +    +  +P  A QP+I+R+++KDE Y     D C +   ++ G R  +  QSE+KL+   +YY+LTT  G QTLGEEYC++ ++      +P  P R  L+  +  A PY+ ++
Sbjct:   62 NNNNNNNINRNNSNLYPSYADQPDILRSSQKDEYYKKLFEDQCFEMLTRITGPRFIMNRQSESKLLANTIYYLLTTMIGSQTLGEEYCNLRKIKDKTFSIPSIPDRIKLYFFHLLA-PYLIKK 183          
BLAST of DY302991 vs. ExPASy Swiss-Prot
Match: PEX10_MOUSE (Peroxisome biogenesis factor 10 OS=Mus musculus GN=Pex10 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 5.261e-13
Identity = 38/103 (36.89%), Postives = 59/103 (57.28%), Query Frame = 3
Query:   90 AAQPEIMRAAEKDEQYASFIYDACRDAFRQLFGTRVAVAYQSETKLVGQMLYYVLTTGSGQQTLGEEYCDITQVVGPQRLPPTPARRALFIVYQTAVPYIAER 398
            A  PE++RAA+KDE Y   +  A  +A   L G +  + ++ E +L+  + Y+ LTT +G QTLGEEY  I QV   Q+  P+  RRA  +     +PY+ ++
Sbjct:    4 AGAPEVIRAAQKDEYYLGGLRSAAGEALHSLAGAKKWLEWRKEIELLSDIAYFGLTTIAGYQTLGEEYVGIIQVDPSQQRVPSRLRRAALVALHAVLPYLLDK 106          
BLAST of DY302991 vs. ExPASy Swiss-Prot
Match: PEX10_MACFA (Peroxisome biogenesis factor 10 OS=Macaca fascicularis GN=PEX10 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.172e-12
Identity = 37/104 (35.58%), Postives = 59/104 (56.73%), Query Frame = 3
Query:   90 AAQPEIMRAAEKDEQYASFIYDACRDAFRQLFGTRVAVAYQSETKLVGQMLYYVLTTGSGQQTLGEEYCDITQVVGPQRLPPTPARRALFIVYQTAVPYIAERI 401
            A+ PE++RAA+KDE Y   +  A   A   L G R  + ++ E +L+  + Y+ LTT +G QTLGEEY  I +V   Q   P+  RR + +     +PY+ +++
Sbjct:    6 ASPPEVIRAAQKDEYYRGGLRSAAGGALHSLAGARKWLEWRKEVELLSDVAYFGLTTLAGYQTLGEEYVSIVRVDPSQTRVPSWLRRGVLVTLHAVLPYLLDKV 109          
BLAST of DY302991 vs. ExPASy Swiss-Prot
Match: PEX10_HUMAN (Peroxisome biogenesis factor 10 OS=Homo sapiens GN=PEX10 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.410e-12
Identity = 37/103 (35.92%), Postives = 58/103 (56.31%), Query Frame = 3
Query:   90 AAQPEIMRAAEKDEQYASFIYDACRDAFRQLFGTRVAVAYQSETKLVGQMLYYVLTTGSGQQTLGEEYCDITQVVGPQRLPPTPARRALFIVYQTAVPYIAER 398
            A+ PE++RAA+KDE Y   +  A   A   L G R  + ++ E +L+  + Y+ LTT +G QTLGEEY  I QV   +   P+  RR + +     +PY+ ++
Sbjct:    6 ASPPEVIRAAQKDEYYRGGLRSAAGGALHSLAGARKWLEWRKEVELLSDVAYFGLTTLAGYQTLGEEYVSIIQVDPSRIHVPSSLRRGVLVTLHAVLPYLLDK 108          
The following BLAST results are available for this feature:
BLAST of DY302991 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PEX10_ARATH4.001e-5366.87Peroxisome biogenesis factor 10 OS=Arabidopsis tha... [more]
PEX10_YEAST2.780e-1329.51Peroxisome biogenesis factor 10 OS=Saccharomyces c... [more]
PEX10_DICDI3.084e-1333.33Peroxisome biogenesis factor 10 OS=Dictyostelium d... [more]
PEX10_MOUSE5.261e-1336.89Peroxisome biogenesis factor 10 OS=Mus musculus GN... [more]
PEX10_MACFA1.172e-1235.58Peroxisome biogenesis factor 10 OS=Macaca fascicul... [more]
PEX10_HUMAN3.410e-1235.92Peroxisome biogenesis factor 10 OS=Homo sapiens GN... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAQ4YI06RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY302991 ID=DY302991; Name=DY302991; organism=Citrus clementina; type=EST; length=976bp
TTGATATCCGCTCATCTGAATCATCAACGATCAGAAACGCGACGCACCAG
CGAGAGATGGGTTCAGGCGAGACACGGCGGTTTCCACCGGCGGCTCAGCC
AGAAATAATGAGAGCTGCCGAGAAAGACGAGCAGTACGCCTCTTTCATCT
ACGATGCCTGCCGCGACGCCTTTCGCCAACTCTTCGGTACAAGAGTTGCT
GTAGCTTATCAGAGTGAGACAAAACTGGTCGGGCAGATGCTGTACTATGT
ATTAACAACAGGTTCCGGACAGCAAACACTGGGAGAGGAATACTGCGACA
TTACTCAGGTTGTAGGTCCTCAAAGACTCCCTCCAACGCCAGCAAGGCGT
GCTCTTTTTATTGTATACCAGACAGCAGTTCCTTACATAGCTGAAAGAAT
CAGGGAGCAGTCGAGATCAATCTTTAGAGACGATAGAATCTCCATCTTCT
TCTGCACCTCGTGTTTATTCTGCAGTATCAAGGTTGAAAGAAAAATTAAA
TGGACTTCGGTTATATGTGATTCGAAGATGGCCTATGGTGCTTCCTATAG
TACGTGAGTTTTTGCAGTTGGTTCTCCGTGCCAACCTCATGTTCTTCTAC
TTTGAAGGACTATATTATCATATATCAAAACGCACGGCTGGTATTCGTTA
TGTATTCATTGGAAAGCCAACAAATCAAAGGCCTAGATATCAAATATTAG
GCGTGTTCCTTTTGATTCAGCTTTGTATAATTGCTGCTGAAGGTCTACGC
CGCAGCAATTTATCTTCTATTGCAAGTTCAGTTCATCACACATCTCTAGG
GTTTCAACAAGCATCAACAGGGCGAGGTTTGCCTGTCTTAAATGAAGAAG
GCAGTTTGATACCATCGGAGAGTGACAAGGGAGGTTGGGTCCTAAATTCC
ACTCAACTTCAAAATCTCAAGCTGGCACCGGAGTCCATAATGGCAAACTC
CGTCTAAACCATCCGCCAGAACCAAC
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