DY303159

Overview
NameDY303159
Unique NameDY303159
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length934
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY303159 vs. ExPASy Swiss-Prot
Match: SFRS7_MOUSE (Splicing factor, arginine/serine-rich 7 OS=Mus musculus GN=Sfrs7 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.056e-19
Identity = 47/108 (43.52%), Postives = 66/108 (61.11%), Query Frame = 3
Query:    3 RVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGK----NGWRVELSHNXXXXXXXXXXXXXXXXXXDLKCYECGEPGHFAREC 314
            +VYVGNL +   + +LE  F  +G +R+VW+AR PPG+AF++F+D RDA+DA+R LDGK    +  RVELS                    + +CYECGE GH+A +C
Sbjct:   41 KVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDC 148          
BLAST of DY303159 vs. ExPASy Swiss-Prot
Match: SFRS7_HUMAN (Splicing factor, arginine/serine-rich 7 OS=Homo sapiens GN=SFRS7 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.056e-19
Identity = 47/108 (43.52%), Postives = 66/108 (61.11%), Query Frame = 3
Query:    3 RVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGK----NGWRVELSHNXXXXXXXXXXXXXXXXXXDLKCYECGEPGHFAREC 314
            +VYVGNL +   + +LE  F  +G +R+VW+AR PPG+AF++F+D RDA+DA+R LDGK    +  RVELS                    + +CYECGE GH+A +C
Sbjct:   12 KVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDC 119          
BLAST of DY303159 vs. ExPASy Swiss-Prot
Match: SFRS7_BOVIN (Splicing factor, arginine/serine-rich 7 OS=Bos taurus GN=SFRS7 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.056e-19
Identity = 47/108 (43.52%), Postives = 66/108 (61.11%), Query Frame = 3
Query:    3 RVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGK----NGWRVELSHNXXXXXXXXXXXXXXXXXXDLKCYECGEPGHFAREC 314
            +VYVGNL +   + +LE  F  +G +R+VW+AR PPG+AF++F+D RDA+DA+R LDGK    +  RVELS                    + +CYECGE GH+A +C
Sbjct:   12 KVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDC 119          
BLAST of DY303159 vs. ExPASy Swiss-Prot
Match: RSP6_CAEEL (Probable splicing factor, arginine/serine-rich 6 OS=Caenorhabditis elegans GN=rsp-6 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.991e-14
Identity = 40/71 (56.34%), Postives = 51/71 (71.83%), Query Frame = 3
Query:    3 RVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGKN----GWRVELS 203
            +VYVG L S  + ++LE+ F  FG IR VWVARRPPG+AF+++DD RDA+DA+R LDG        RVELS
Sbjct:    4 KVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDGSRICGVRARVELS 74          
BLAST of DY303159 vs. ExPASy Swiss-Prot
Match: SFRS3_MOUSE (Splicing factor, arginine/serine-rich 3 OS=Mus musculus GN=Sfrs3 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.601e-14
Identity = 39/72 (54.17%), Postives = 53/72 (73.61%), Query Frame = 3
Query:    3 RVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGKN----GWRVELSH 206
            +VYVGNL +  ++ +LE  F  +G +RSVWVAR PPG+AF++F+D RDA DA+RELDG+       RVELS+
Sbjct:   11 KVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSN 82          
BLAST of DY303159 vs. ExPASy Swiss-Prot
Match: SFRS3_HUMAN (Splicing factor, arginine/serine-rich 3 OS=Homo sapiens GN=SFRS3 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.601e-14
Identity = 39/72 (54.17%), Postives = 53/72 (73.61%), Query Frame = 3
Query:    3 RVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGKN----GWRVELSH 206
            +VYVGNL +  ++ +LE  F  +G +RSVWVAR PPG+AF++F+D RDA DA+RELDG+       RVELS+
Sbjct:   11 KVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSN 82          
BLAST of DY303159 vs. ExPASy Swiss-Prot
Match: SFRS3_BOVIN (Splicing factor, arginine/serine-rich 3 OS=Bos taurus GN=SFRS3 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.601e-14
Identity = 39/72 (54.17%), Postives = 53/72 (73.61%), Query Frame = 3
Query:    3 RVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGKN----GWRVELSH 206
            +VYVGNL +  ++ +LE  F  +G +RSVWVAR PPG+AF++F+D RDA DA+RELDG+       RVELS+
Sbjct:   11 KVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSN 82          
BLAST of DY303159 vs. ExPASy Swiss-Prot
Match: RBP1_DROME (RNA-binding protein 1 OS=Drosophila melanogaster GN=Rbp1 PE=1 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 1.291e-13
Identity = 33/58 (56.90%), Postives = 45/58 (77.59%), Query Frame = 3
Query:    3 RVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDG 176
            +VYVGNL S  S+ ++E  F  +G +R+VWVAR PPG+AF++F+D RDA+DA R LDG
Sbjct:   12 KVYVGNLGSSASKHEIEGAFAKYGPLRNVWVARNPPGFAFVEFEDRRDAEDATRALDG 69          
The following BLAST results are available for this feature:
BLAST of DY303159 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
SFRS7_MOUSE2.056e-1943.52Splicing factor, arginine/serine-rich 7 OS=Mus mus... [more]
SFRS7_HUMAN2.056e-1943.52Splicing factor, arginine/serine-rich 7 OS=Homo sa... [more]
SFRS7_BOVIN2.056e-1943.52Splicing factor, arginine/serine-rich 7 OS=Bos tau... [more]
RSP6_CAEEL1.991e-1456.34Probable splicing factor, arginine/serine-rich 6 O... [more]
SFRS3_MOUSE2.601e-1454.17Splicing factor, arginine/serine-rich 3 OS=Mus mus... [more]
SFRS3_HUMAN2.601e-1454.17Splicing factor, arginine/serine-rich 3 OS=Homo sa... [more]
SFRS3_BOVIN2.601e-1454.17Splicing factor, arginine/serine-rich 3 OS=Bos tau... [more]
RBP1_DROME1.291e-1356.90RNA-binding protein 1 OS=Drosophila melanogaster G... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAQ4YP19RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY303159 ID=DY303159; Name=DY303159; organism=Citrus clementina; type=EST; length=934bp
CTCGTGTGTACGTGGGTAACTTGGATTCACGAGTTTCTGAGCGGGATCTT
GAGGATGAGTTTCGTGTGTTTGGAGTTATTCGAAGTGTTTGGGTTGCTCG
GAGGCCGCCTGGTTATGCTTTTATAGACTTTGATGACTATAGGGATGCAC
AGGATGCGATTCGTGAATTAGATGGCAAGAATGGCTGGAGAGTTGAGCTT
TCTCACAATTCAAGAGGTGGAGGTGGTGGCCGCGGAGGGGGTCGTGGTCG
CTCTGGTGGTTCTGATTTGAAGTGCTATGAGTGTGGTGAGCCTGGTCATT
TTGCCCGTGAATGCCGTCTGCGTGGTGGTTCAGGGAGACGTCGTAGCCGC
AGTCCGAGATATCGCAGGAGCCCAAGTTATGGACGAAGGAGTTACAGCCC
TCGTGGGAGATCCCCAAGACGCCGCAGTGTGTCACCTCGTGGGCGTAGCT
ATAGCAGATCACCACCGTACCGTGGGCGTGAGGAGTTGCCATATGCCAAC
GGAAATGGTGCAAGGGATCGTCGCAGAAGCAGGAGCTGAGCAGTGAAAAC
TTGGTAACTTGCCTTCGTTGGGAGGATCCTGGGATTAAGTGTGTTTAATA
TGTTTTGGACTTCAATACATCTATGTTTTTATTTTGGTGACGCCCTCAGG
CTCTTGGATTTGGATAAGTTTTCTTCTTACTTTACTACCATGTTGGTTAC
ATTTACTTTAGTTATGAATAGTTGCAGTTTCTTAATGAACACAAAACTAT
TTAATGCTTATAATTTATTGAGATAGCTGTTTAGAATGCTGCTAAAAGTA
CATGCTTTTCCTTTTTCCTTTTGTGTCGAGGACAAGGTGTCTTCCGGGTC
TGCCTCATTGGTTTATTGGTTCTACCCTCCCCTGGGGCCTCCATTCTGTG
CTGCCCTGGCTTTGGGATCCTTCATTTTGGCTTC
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