DY304290

Overview
NameDY304290
Unique NameDY304290
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1145
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304290 vs. ExPASy Swiss-Prot
Match: VP282_ARATH (Vacuolar protein sorting-associated protein 28 homolog 2 OS=Arabidopsis thaliana GN=VPS28-2 PE=1 SV=2)

HSP 1 Score: 325.479 bits (833), Expect = 3.663e-88
Identity = 163/208 (78.37%), Postives = 176/208 (84.62%), Query Frame = 2
Query:  188 MEVKLWNDKREREMYENFAELYAIIKATEKLEKAYVRDIISSSEYETECQKLIAHFKTLSSTLKDIVPSIERFADTYKMDCPAALNRLVTSGVPATVEHRXXXXXXXXXXXXXXXECVQNFITAMDSLKLNMVAVDQVHPXXXXXXXXXXXXTILPPDFEGKTKMKDWISRLSKMGAADELTEQQSRQLHFDLESSYNSFMAALPNAG 811
            MEVKLWNDKREREMYENFAEL+AIIKATEKLEKAY+RD+I+ SEYE+ECQKLI HFKTLS+TLKD VP+IERFADTYKMDCPAAL RLVTSG+PATVEHR               ECVQNFIT+MDSLKLNMVAVDQV+P            +ILPPDFEGKTKMK+W+SRLSKMGAADELTEQQSRQLHFDLESSYNSFMAALP AG
Sbjct:    2 MEVKLWNDKREREMYENFAELFAIIKATEKLEKAYIRDLINPSEYESECQKLIVHFKTLSATLKDTVPNIERFADTYKMDCPAALYRLVTSGLPATVEHRATVAASTSNSASIVAECVQNFITSMDSLKLNMVAVDQVYPLLSDLSASLNKLSILPPDFEGKTKMKEWLSRLSKMGAADELTEQQSRQLHFDLESSYNSFMAALPKAG 209          
BLAST of DY304290 vs. ExPASy Swiss-Prot
Match: VP281_ARATH (Vacuolar protein sorting-associated protein 28 homolog 1 OS=Arabidopsis thaliana GN=VPS28-1 PE=1 SV=1)

HSP 1 Score: 319.701 bits (818), Expect = 2.010e-86
Identity = 160/208 (76.92%), Postives = 175/208 (84.13%), Query Frame = 2
Query:  188 MEVKLWNDKREREMYENFAELYAIIKATEKLEKAYVRDIISSSEYETECQKLIAHFKTLSSTLKDIVPSIERFADTYKMDCPAALNRLVTSGVPATVEHRXXXXXXXXXXXXXXXECVQNFITAMDSLKLNMVAVDQVHPXXXXXXXXXXXXTILPPDFEGKTKMKDWISRLSKMGAADELTEQQSRQLHFDLESSYNSFMAALPNAG 811
            MEVKLWNDKREREMYENFAELYAIIKATEKLEKAY+RD+IS SEYETECQKLI HFKTLS++LKD+VP+IERFA+TYKMDC AA+ RLVTSGVPATVEHR               ECVQNFIT+MDSLKLNMVAVDQV+P            +ILPPDFEGK KMK+W+ RLSKMGA+DELTEQQ+RQLHFDLESSYNSFMAALPNAG
Sbjct:    1 MEVKLWNDKREREMYENFAELYAIIKATEKLEKAYIRDLISPSEYETECQKLIVHFKTLSASLKDMVPNIERFAETYKMDCSAAVYRLVTSGVPATVEHRAAASASTSSSASVVAECVQNFITSMDSLKLNMVAVDQVYPLLSDLSASLNKLSILPPDFEGKIKMKEWLLRLSKMGASDELTEQQARQLHFDLESSYNSFMAALPNAG 208          
BLAST of DY304290 vs. ExPASy Swiss-Prot
Match: VPS28_DICDI (Vacuolar protein sorting-associated protein 28 OS=Dictyostelium discoideum GN=vps28 PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 3.137e-47
Identity = 99/203 (48.77%), Postives = 129/203 (63.55%), Query Frame = 2
Query:  191 EVKLWNDKREREMYENFAELYAIIKATEKLEKAYVRDIISSSEYETECQKLIAHFKTLSSTLKDIVPSIERFADTYKMDCPAALNRLVTSGVPATVEHRXXXXXXXXXXXXXXXECVQNFITAMDSLKLNMVAVDQVHPXXXXXXXXXXXXTILPPDFEGKTKMKDWISRLSKMGAADELTEQQSRQLHFDLESSYNSFMAAL 799
            EVKL+N+  EREMYEN AELY+IIK TE LEKAY+RD +S  +Y T C KLIA FK+  + LKD V ++ +F   Y ++C AA +RLV  G P+T+EH                E VQ FIT MDS++L +V+VD ++P              L P FEGK K+K+WIS L++M A DEL + QSRQL FDL++SYN F  A+
Sbjct:   84 EVKLFNNNIEREMYENLAELYSIIKVTEHLEKAYIRDDVSPKDYTTACSKLIAQFKSSQTLLKDQVSNVGQFMKDYDLNCKAAFDRLVIKGFPSTLEHNTNESSTDSAMAKNVAEAVQLFITTMDSIRLKLVSVDGIYPLLSDLMESLNKNQWLGPTFEGKEKIKNWISILNQMKATDELDDDQSRQLLFDLDNSYNIFYKAI 286          
BLAST of DY304290 vs. ExPASy Swiss-Prot
Match: VPS28_HUMAN (Vacuolar protein sorting-associated protein 28 homolog OS=Homo sapiens GN=VPS28 PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.157e-33
Identity = 75/200 (37.50%), Postives = 114/200 (57.00%), Query Frame = 2
Query:  191 EVKLWNDKREREMYENFAELYAIIKATEKLEKAYVRDIISSSEYETECQKLIAHFKTLSSTLKDI-VPSIERFADTYKMDCPAALNRLVTSGVPATVEHRXXXXXXXXXXXXXXXECVQNFITAMDSLKLNMVAVDQVHPXXXXXXXXXXXXTILPPDFEGKTKMKDWISRLSKMGAADELTEQQSRQLHFDLESSYNSF 787
            EVKL+ + RERE Y+N AEL+A++K  + LEKAY++D +S SEY   C +L+  +K     ++   + SI+ F   +++DCP A+ R +    P T++                 + V  FIT MD L+L + A+D++ P            + LPPDFEG+  +  W+  LS M A+DEL + Q RQ+ FDLES+YN+F
Sbjct:   23 EVKLYKNAREREKYDNMAELFAVVKTMQALEKAYIKDCVSPSEYTAACSRLLVQYKAAFRQVQGSEISSIDEFCRKFRLDCPLAMER-IKEDRPITIKD------DKGNLNRCIADVVSLFITVMDKLRLEIRAMDEIQPDLRELMETMHRMSHLPPDFEGRQTVSQWLQTLSGMSASDELDDSQVRQMLFDLESAYNAF 215          
BLAST of DY304290 vs. ExPASy Swiss-Prot
Match: VPS28_RAT (Vacuolar protein sorting-associated protein 28 homolog OS=Rattus norvegicus GN=Vps28 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 5.743e-33
Identity = 73/200 (36.50%), Postives = 114/200 (57.00%), Query Frame = 2
Query:  191 EVKLWNDKREREMYENFAELYAIIKATEKLEKAYVRDIISSSEYETECQKLIAHFKTLSSTLKDI-VPSIERFADTYKMDCPAALNRLVTSGVPATVEHRXXXXXXXXXXXXXXXECVQNFITAMDSLKLNMVAVDQVHPXXXXXXXXXXXXTILPPDFEGKTKMKDWISRLSKMGAADELTEQQSRQLHFDLESSYNSF 787
            EVKL+ + RERE Y+N AEL+A++K  + LEKAY++D ++ +EY   C +L+  +K     ++   + SI+ F   +++DCP A+ R +    P T++                 + V  FIT MD L+L + A+D++ P            + LPPDFEG+  +  W+  LS M A+DEL + Q RQ+ FDLES+YN+F
Sbjct:   30 EVKLYKNAREREKYDNMAELFAVVKTMQALEKAYIKDCVTPNEYTAACSRLLVQYKAAFRQVQGSEISSIDEFCRKFRLDCPLAMER-IKEDRPITIKD------DKGNLNRCIADVVSLFITVMDKLRLEIRAMDEIQPDLRELMETMHRMSHLPPDFEGRQTVSQWLQTLSGMSASDELDDSQVRQMLFDLESAYNAF 222          
BLAST of DY304290 vs. ExPASy Swiss-Prot
Match: VPS28_MOUSE (Vacuolar protein sorting-associated protein 28 homolog OS=Mus musculus GN=Vps28 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 5.743e-33
Identity = 73/200 (36.50%), Postives = 114/200 (57.00%), Query Frame = 2
Query:  191 EVKLWNDKREREMYENFAELYAIIKATEKLEKAYVRDIISSSEYETECQKLIAHFKTLSSTLKDI-VPSIERFADTYKMDCPAALNRLVTSGVPATVEHRXXXXXXXXXXXXXXXECVQNFITAMDSLKLNMVAVDQVHPXXXXXXXXXXXXTILPPDFEGKTKMKDWISRLSKMGAADELTEQQSRQLHFDLESSYNSF 787
            EVKL+ + RERE Y+N AEL+A++K  + LEKAY++D ++ +EY   C +L+  +K     ++   + SI+ F   +++DCP A+ R +    P T++                 + V  FIT MD L+L + A+D++ P            + LPPDFEG+  +  W+  LS M A+DEL + Q RQ+ FDLES+YN+F
Sbjct:   23 EVKLYKNAREREKYDNMAELFAVVKTMQALEKAYIKDCVTPNEYTAACSRLLVQYKAAFRQVQGSEISSIDEFCRKFRLDCPLAMER-IKEDRPITIKD------DKGNLNRCIADVVSLFITVMDKLRLEIRAMDEIQPDLRELMETMHRMSHLPPDFEGRQTVSQWLQTLSGMSASDELDDSQVRQMLFDLESAYNAF 215          
BLAST of DY304290 vs. ExPASy Swiss-Prot
Match: VPS28_BOVIN (Vacuolar protein sorting-associated protein 28 homolog OS=Bos taurus GN=VPS28 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 5.743e-33
Identity = 73/200 (36.50%), Postives = 114/200 (57.00%), Query Frame = 2
Query:  191 EVKLWNDKREREMYENFAELYAIIKATEKLEKAYVRDIISSSEYETECQKLIAHFKTLSSTLKDI-VPSIERFADTYKMDCPAALNRLVTSGVPATVEHRXXXXXXXXXXXXXXXECVQNFITAMDSLKLNMVAVDQVHPXXXXXXXXXXXXTILPPDFEGKTKMKDWISRLSKMGAADELTEQQSRQLHFDLESSYNSF 787
            EVKL+ + RERE Y+N AEL+A++K  + LEKAY++D ++ +EY   C +L+  +K     ++   + SI+ F   +++DCP A+ R +    P T++                 + V  FIT MD L+L + A+D++ P            + LPPDFEG+  +  W+  LS M A+DEL + Q RQ+ FDLES+YN+F
Sbjct:   23 EVKLYKNAREREKYDNMAELFAVVKTMQALEKAYIKDCVTPNEYTAACSRLLVQYKAAFRQVQGSEISSIDEFCRKFRLDCPLAMER-IKEDRPITIKD------DKGNLNRCIADVVSLFITVMDKLRLEIRAMDEIQPDLRELMETMHRMSHLPPDFEGRQTVSQWLQTLSGMSASDELDDSQVRQMLFDLESAYNAF 215          
BLAST of DY304290 vs. ExPASy Swiss-Prot
Match: VPS28_DROME (Vacuolar protein sorting-associated protein 28 homolog OS=Drosophila melanogaster GN=Vps28 PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.279e-32
Identity = 77/200 (38.50%), Postives = 111/200 (55.50%), Query Frame = 2
Query:  191 EVKLWNDKREREMYENFAELYAIIKATEKLEKAYVRDIISSSEYETECQKLIAHFKTLSSTLK-DIVPSIERFADTYKMDCPAALNRLVTSGVPATVEHRXXXXXXXXXXXXXXXECVQNFITAMDSLKLNMVAVDQVHPXXXXXXXXXXXXTILPPDFEGKTKMKDWISRLSKMGAADELTEQQSRQLHFDLESSYNSF 787
            EVKL+ + RERE Y+N A+LYAII   ++LEKAY+RD I+  EY   C K +  +K     ++ D  PS+E F   +++DCPAAL R +    P T+                  E V  FIT MD L+L +  +D + P            +++P DF+ K K++ W+  L++M A+DEL+E Q RQ  FDLES+Y  F
Sbjct:   11 EVKLFRNAREREKYDNMADLYAIINTIQQLEKAYIRDCITPQEYTAACSKYLVQYKVAFKQVQCDEFPSVETFVKKFRLDCPAALER-IREDRPITIRD------DKGNTSKCIAEIVSLFITIMDKLRLQINTMDALQPDVKDLADNMNRLSLIPEDFDAKLKVEKWLGSLNEMQASDELSEGQVRQFLFDLESAYADF 203          
BLAST of DY304290 vs. ExPASy Swiss-Prot
Match: VPS28_CAEEL (Vacuolar protein sorting-associated protein 28 homolog OS=Caenorhabditis elegans GN=Y87G2A.10 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.198e-30
Identity = 79/207 (38.16%), Postives = 118/207 (57.00%), Query Frame = 2
Query:  179 NTPMEVKLWNDKREREMYENFAELYAIIKATEKLEKAYVRDIISSSEYETECQKLIAHFKTLSSTLKDIVPSIERFADTYKMDCPAALNRLVTSGVPATVEHRXXXXXXXXXXXXXXXECVQNFITAMDSLKLNMVAVDQVHPXXXXXXXXXXXXTILPPDFEGKTKMKDWISRLSKMGAADELTEQQSRQLHFDLESSYNSFMAAL 799
            N   EV+L+ +  ERE  EN +EL+A++ A E LEK + RD +S+ EY++EC KLI  +K ++  L     SIE FA  Y++ CPAA+ R +  G P TV+                   V+ FIT +D+L+LN  AVD ++P            + +P D    TK+K W  RLS M A+DE++++ +RQ+ FD+ES+Y +F  AL
Sbjct:    7 NLMREVRLFENHSEREQMENLSELFAVLNALEHLEKMFSRDHVSADEYKSECFKLIDQYK-VTMRLVHGATSIEDFAKKYRLHCPAAIER-IREGRPITVKD------DQGNVLKHIASIVEQFITFLDALRLNTRAVDDLYPGLDDLYNAINTTSRVPIDAIVTTKVKKWHDRLSSMAASDEISDEDARQMIFDVESAYQAFNKAL 205          
BLAST of DY304290 vs. ExPASy Swiss-Prot
Match: VPS28_YEAST (Vacuolar protein sorting-associated protein 28 OS=Saccharomyces cerevisiae GN=VPS28 PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 2.337e-26
Identity = 81/232 (34.91%), Postives = 115/232 (49.57%), Query Frame = 2
Query:  158 INRLIHLNTPMEVKLWNDKREREMYENFAELYAIIKATEKLEKAYVRDIISSSEYETECQKLIAHFKT-LSSTLKDIV----PSIERFADTYKMDCPAALNRLVTSGVPATVEH-------------RXXXXXXXXXXXXXXXECVQNFITAMDSLKLNMVAVDQVHPXXXXXXXXXXXXTILPPDFEGKTKMKDWISRLSKMGAADELTEQQSRQLHFDLESSYNSFMAAL 799
            I++L H   P+       K ++E+ E  +E+Y+I+   + +EKAY++D I  ++Y     KL+  FK  L+S  K+ +     SIE F DTY +    A+ RL   G+P T EH             +               E   NFIT MD+LKLN  A DQ+HP            T    DFE ++K+ DWI R++K+   D LTE Q R+L FDLE +Y SF A L
Sbjct:   14 ISQLFHDEVPLFDNSITSK-DKEVIETLSEIYSIVITLDHVEKAYLKDSIDDTQYTNTVDKLLKQFKVYLNSQNKEEINKHFQSIEAFCDTYNITASNAITRL-ERGIPITAEHAISTTTSAPSGDNKQSSSSDKKFNAKYVAEATGNFITVMDALKLNYNAKDQLHPLLAELLISINRVT--RDDFENRSKLIDWIVRINKLSIGDTLTETQIRELLFDLELAYKSFYALL 241          
The following BLAST results are available for this feature:
BLAST of DY304290 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
VP282_ARATH3.663e-8878.37Vacuolar protein sorting-associated protein 28 hom... [more]
VP281_ARATH2.010e-8676.92Vacuolar protein sorting-associated protein 28 hom... [more]
VPS28_DICDI3.137e-4748.77Vacuolar protein sorting-associated protein 28 OS=... [more]
VPS28_HUMAN1.157e-3337.50Vacuolar protein sorting-associated protein 28 hom... [more]
VPS28_RAT5.743e-3336.50Vacuolar protein sorting-associated protein 28 hom... [more]
VPS28_MOUSE5.743e-3336.50Vacuolar protein sorting-associated protein 28 hom... [more]
VPS28_BOVIN5.743e-3336.50Vacuolar protein sorting-associated protein 28 hom... [more]
VPS28_DROME1.279e-3238.50Vacuolar protein sorting-associated protein 28 hom... [more]
VPS28_CAEEL1.198e-3038.16Vacuolar protein sorting-associated protein 28 hom... [more]
VPS28_YEAST2.337e-2634.91Vacuolar protein sorting-associated protein 28 OS=... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAQ8YE17RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304290 ID=DY304290; Name=DY304290; organism=Citrus clementina; type=EST; length=1145bp
CGACAATCTAAGCCGCGTTTCAACTACTCTTTGAAGAAGATTAGTTCTCT
TTGCGCGTGTCCCGTTCTCTTCTCCAATCCTCCACTATTGCTTAAAAAAG
AAAAAAAATTAAAAAAAAAACCCAAAATTTATCCAACCCCTCAAACAGTA
TATACTTATAAATAGATTAATACATCTAAATACCCCAATGGAGGTCAAGC
TATGGAACGACAAGCGCGAGAGAGAAATGTATGAAAACTTTGCTGAGCTT
TATGCTATAATAAAAGCCACAGAAAAGCTTGAAAAAGCATATGTTCGTGA
TATTATTAGTTCCTCTGAGTATGAAACAGAATGTCAAAAGCTCATTGCCC
ATTTTAAAACCTTATCTTCGACCTTGAAAGATATTGTTCCCAGCATTGAA
CGGTTTGCTGATACATATAAAATGGACTGTCCGGCTGCTCTGAATCGCTT
GGTCACCTCTGGGGTGCCTGCTACGGTGGAGCATAGAGCGGCTGCAGTTG
CCTCAACCACCACCTCTGCTGCCATTGTGGCAGAGTGTGTCCAGAACTTT
ATTACTGCCATGGACTCTTTAAAATTGAATATGGTGGCAGTTGATCAGGT
GCATCCGCTGTTATCAGATTTGCTGGGTTCACTCAATAAGCTGACTATTC
TGCCACCGGATTTTGAGGGGAAAACAAAAATGAAGGACTGGATTTCAAGG
TTGTCAAAGATGGGTGCTGCAGATGAGTTGACCGAGCAGCAGTCCCGGCA
ACTTCACTTTGACCTTGAATCCTCATACAACTCATTCATGGCAGCTCTTC
CTAATGCTGGTACTTAAATTGATGATCTAGGTAAGCTGGTAAAGATTATC
AAACATAGTTGTTTTGTTTTGTTGATTTCATATATAAGATAATTTTGTGG
TTTGAACTCATTGGATGAGTGAAAACTTGGAAGGAATTCTTATAATTTTT
GAAATTGCTTTAAAAATTTGGGGAAATGAACTGCCTTATTGTACTGAAAA
ATTGAATTGGTTTGTGCTGAACTCCAAAAAAAAATTATTATAAAACCAAT
CCAAGGTCCCTTAACCTTTAAAATCTCCACTTGGTTTTGGGGGAAAGAAA
ATTAAAAACCCTGTAAAAAAAAATTGTTTAATTTTAATTGTTACC
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