DY304294

Overview
NameDY304294
Unique NameDY304294
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1264
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304294 vs. ExPASy Swiss-Prot
Match: E1312_ARATH (Glucan endo-1,3-beta-glucosidase 12 OS=Arabidopsis thaliana GN=At4g29360 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.418e-27
Identity = 70/212 (33.02%), Postives = 123/212 (58.02%), Query Frame = 2
Query:  215 DRVASIVTSLNIPAVRLPNSDPSLIRAFAYTNTTILLSIPNAFVPTLAANRTLAQRWLYRHVLPFYPRSKISLISVGNDIFDTTPDLSPFLLPAVRNVHLALHDLGIKKIPVXXXXXXXXXXXXXXPPSSAQFQEPAGSLIMKPLLQFLEDTNSSFLVNVYPYNMYRLNCE-IPLGFALFENYPFNFQDDLIPGVRYTILFDLMVEAVINAM 847
            +RV+ ++  LNI  VR+ +++  +++AFA T   +++ +PNA +   A  ++    WL  ++LP+YP +KI+ ISVG ++ +   + +  +LPA+RN+H AL   G+ K                 PPSSA F +   S  +KP+L+FL +  S F++++YPY  YR + E +PL +ALFE+   +   D   G+ Y+ +FD  ++A+  A+
Sbjct:   42 NRVSELIQHLNIKFVRIYDANIDVLKAFANTGIELMIGVPNADLLAFAQFQSNVDTWLSNNILPYYPSTKITSISVGLEVTEAPDNATGLVLPAMRNIHTALKKSGLDKKIKISSSHSLAILSRSFPPSSASFSK-KHSAFLKPMLEFLVENESPFMIDLYPYYAYRDSTEKVPLEYALFES--SSQVVDPATGLLYSNMFDAQLDAIYFAL 250          
BLAST of DY304294 vs. ExPASy Swiss-Prot
Match: E132_ARATH (Glucan endo-1,3-beta-glucosidase 2 OS=Arabidopsis thaliana GN=At1g66250 PE=1 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 3.158e-27
Identity = 75/212 (35.38%), Postives = 118/212 (55.66%), Query Frame = 2
Query:  218 RVASIVTSLNIPAVRLPNSDPSLIRAFAYTNTTILLSIPNAFVPTLAANRTLAQRWLYRHVLPFYPRSKISLISVGNDIFDTTPDLSPFLLPAVRNVHLALHDLGIKKIPVXXXXXXXXXXXXXXPPSSAQFQEPAGSLIMKPLLQFLEDTNSSFLVNVYPYNMY-RLNCEIPLGFALFENYPFNFQD-DLIPGVRYTILFDLMVEAVINAM 847
            +V +++ +  I  +RL N+DP L+ A A T   +++SIPN  +  +  + + A  W+ R+V+  YP + I+ +SVG+++  +  + +P L+ A++NVH AL    + K+                PPS A F     ++I+ PLL FL+ TNS  +VNVYPY  Y + N  IPL +ALF+  P N +  D    VRY+  FD MV+A   AM
Sbjct:   48 QVVALLKAQEIRHIRLYNADPGLLIALANTGIKVIISIPNDQLLGIGQSNSTAANWVKRNVIAHYPATMITAVSVGSEVLTSLSNAAPVLVSAIKNVHAALLSANLDKLIKVSTPLSTSLILDPFPPSQAFFNRSLNAVIV-PLLSFLQSTNSYLMVNVYPYIDYMQSNGVIPLDYALFKPIPPNKEAVDANTLVRYSNAFDAMVDATYFAM 258          
BLAST of DY304294 vs. ExPASy Swiss-Prot
Match: E137_ARATH (Glucan endo-1,3-beta-glucosidase 7 OS=Arabidopsis thaliana GN=At4g34480 PE=1 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 2.263e-25
Identity = 80/209 (38.28%), Postives = 115/209 (55.02%), Query Frame = 2
Query:  230 IVTSLNIPAVRLPNSDPSLIRAFAYTNTTILLSIPNAFVPTLAANRTLAQRWLYRHVLPFYPRSKISLISVGNDI-FDTTPDLSPFLLPAVRNVHLALHDLGIKKIPVXXXXXXXXXXXXXXPPSSAQFQEPAG-SLIMKPLLQFLEDTNSSFLVNVYPYNMYRLNCE-IPLGFALFENYPFNFQDDLIPGVRYTILFDLMVEAVINAM 847
            ++ S +I  VRL  +DP++I+A A T   I++   N  VP+LA++   A +W+  +VLPFYP SKI LI+VGN+I     P+L   LLPA++NV  AL  + +                   PPSS  F   AG    +K +LQFL DT S F +N YP+  Y+ +     L F LFE  P   + D   G++YT +FD  V+AV +A+
Sbjct:   46 LLQSTSIQKVRLYGADPAIIKALAGTGVGIVIGAANGDVPSLASDPNAATQWINSNVLPFYPASKIMLITVGNEILMSNDPNLVNQLLPAMQNVQKALEAVSLGGKIKVSTVNSMTVLGSSDPPSSGSF--AAGYQTGLKGILQFLSDTGSPFAINPYPFFAYQSDPRPETLAFCLFE--PNAGRVDSKTGIKYTNMFDAQVDAVHSAL 250          
BLAST of DY304294 vs. ExPASy Swiss-Prot
Match: EA6_ARATH (Probable glucan endo-1,3-beta-glucosidase A6 OS=Arabidopsis thaliana GN=A6 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 4.719e-23
Identity = 67/209 (32.06%), Postives = 115/209 (55.02%), Query Frame = 2
Query:  227 SIVTSLNIPAVRLPNSDPSLIRAFAYTNTTILLSIPNAFVPTLAANRTLAQRWLYRHVLPFYPRSKISLISVGNDIFD-TTPDLSPFLLPAVRNVHLALHDLGIKKIPVXXXXXXXXXXXXXXPPSSAQFQEPAGSLIMKPLLQFLEDTNSSFLVNVYPYNMYRLN-CEIPLGFALFENYPFNFQDDLIPGVRYTILFDLMVEAVINAM 847
            + + S+    V+L ++DP  +   + TN  + +++PN  +  L++N+T+A  W+  ++LP+YP+++I  + VGN+I    + ++S  L+PA+R +  +L   GI  I V              PPS+  F+E     +M PLL+FL  TNS F +NV+PY  +  N     L FALF+ +  +   D   G+ Y  L D M+++V+ AM
Sbjct:   61 NFIKSIKAGHVKLYDADPESLTLLSQTNLYVTITVPNHQITALSSNQTIADEWVRTNILPYYPQTQIRFVLVGNEILSYNSGNVSVNLVPAMRKIVNSLRLHGIHNIKV-GTPLAMDSLRSSFPPSNGTFREEITGPVMLPLLKFLNGTNSYFFLNVHPYFRWSRNPMNTSLDFALFQGH--STYTDPQTGLVYRNLLDQMLDSVLFAM 266          
BLAST of DY304294 vs. ExPASy Swiss-Prot
Match: E133_ARATH (Glucan endo-1,3-beta-glucosidase 3 OS=Arabidopsis thaliana GN=At2g01630 PE=1 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 6.815e-22
Identity = 67/212 (31.60%), Postives = 116/212 (54.72%), Query Frame = 2
Query:  218 RVASIVTSLNIPAVRLPNSDPSLIRAFAYTNTTILLSIPNAFVPTLAANRTLAQRWLYRHVLPFYPRSKISLISVGNDIFDTTPDLSPFLLPAVRNVHLALHDLGIKKIPVXXXXXXXXXXXXXXPPSSAQFQEPAGSLIMKPLLQFLEDTNSSFLVNVYPYNMY-RLNCEIPLGFALFENYPFNFQD-DLIPGVRYTILFDLMVEAVINAM 847
            +V +++ S NI  VRL ++D S++ AFA+T   +++S+PN  +  ++ +   A  W+ R+V  +YP + I+ I+VG+++  +  + +  L+ A++ +  AL    + +                 PPS A F +    +I+ PLL+FL+ T S  L+NVYPY  Y + N  IPL +ALF+    N +  D    + YT +FD +V+A   AM
Sbjct:   39 QVVALLKSQNINRVRLYDADRSMLLAFAHTGVQVIISVPNDQLLGISQSNATAANWVTRNVAAYYPATNITTIAVGSEVLTSLTNAASVLVSALKYIQAALVTANLDRQIKVSTPHSSTIILDSFPPSQAFFNKTWDPVIV-PLLKFLQSTGSPLLLNVYPYFDYVQSNGVIPLDYALFQPLQANKEAVDANTLLHYTNVFDAIVDAAYFAM 249          
BLAST of DY304294 vs. ExPASy Swiss-Prot
Match: E1314_ARATH (Glucan endo-1,3-beta-glucosidase 14 OS=Arabidopsis thaliana GN=At2g27500/F10A12.18 PE=1 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 5.769e-21
Identity = 66/212 (31.13%), Postives = 115/212 (54.25%), Query Frame = 2
Query:  218 RVASIVTSLNIPAVRLPNSDPSLIRAFAYTNTTILLSIPNAFVPTLAANRTLAQRWLYRHVLPFYPRSKISLISVGNDIFDTTPD-LSPFLLPAVRNVHLALHDLGIKKIPVXXXXXXXXXXXXXXPPSSAQFQEPAGSLIMKPLLQFLEDTNSSFLVNVYPYNMYRLN-CEIPLGFALFENYPFNFQDDLIPGVRYTILFDLMVEAVINAM 847
            RVA ++ SLNI  V+L ++DP+++ +F+ +    ++ + N ++  ++ + T AQ WL + + P   +++I+ I VGN+IF T    L   LLPA+++V+ AL +LG++K                 PPSS  F+E      ++PLL F     S FL+N YP+  Y+ +  E+PL + LF+  P     D    + Y  +    V+A+ +A+
Sbjct:   45 RVAVLLRSLNITRVKLYDADPNVLFSFSNSQVDFMIGLGNEYLQNMSTDPTKAQDWLQQRLEPHISKTRITSIVVGNEIFKTNDHVLIQSLLPAMKSVYAALTNLGLEKQVTVTSAHSLDILSTSYPPSSGSFKEEF-IQYLQPLLDFHSQIESPFLINAYPFFAYKDSPKEVPLEYVLFQ--PNQGMVDPNTNLHYDNMLFAQVDALYSAI 253          
BLAST of DY304294 vs. ExPASy Swiss-Prot
Match: GUB_NICPL (Lichenase OS=Nicotiana plumbaginifolia GN=GN1 PE=2 SV=3)

HSP 1 Score: 101.293 bits (251), Expect = 1.285e-20
Identity = 69/217 (31.80%), Postives = 108/217 (49.77%), Query Frame = 2
Query:  218 RVASIVTSLNIPAVRLPNSDPSLIRAFAYTNTTILLSIPNAFVPTLAANRTLAQRWLYRHVLPFYPRSKISLISVGNDIFDT--TPDLSPFLLPAVRNVHLALHDLGIKKIPVXXXXXXXXXXXXXXPPSSAQFQEPAGSLIMKPLLQFLEDTNSSFLVNVYPYNMYRLN-CEIPLGFALFENYPFNFQDDLIPGVRYTILFDLMVEAVINAMPLGG 859
            +V  +  S NI  +RL + + + ++A   +N  ++L +PN+ +  +AAN + A  W+ R+V  F+P  K   I+VGN++     T  L+ +LLPA+RN+  A+   G++                  PPS   F+    S I  P++ F+   NS  LVN+YPY  Y  N  +I L +ALF       QD     + Y  LFD M +AV  A+   G
Sbjct:   49 QVVQLYKSKNIRRMRLYDPNQAALQALRGSNIEVMLGVPNSDLQNIAANPSNANNWVQRNVRNFWPAVKFRYIAVGNEVSPVTGTSSLTRYLLPAMRNIRNAISSAGLQNNIKVSSSVDMTLIGNSFPPSQGSFRNDVRSFI-DPIIGFVRRINSPLLVNIYPYFSYAGNPRDISLPYALFTAPNVVVQDG---SLGYRNLFDAMSDAVYAALSRAG 261          
BLAST of DY304294 vs. ExPASy Swiss-Prot
Match: E1313_ARATH (Glucan endo-1,3-beta-glucosidase 13 OS=Arabidopsis thaliana GN=At5g56590 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 2.424e-19
Identity = 59/212 (27.83%), Postives = 114/212 (53.77%), Query Frame = 2
Query:  218 RVASIVTSLNIPAVRLPNSDPSLIRAFAYTNTTILLSIPNAFVPTLAANRTLAQRWLYRHVLPFYPRSKISLISVGNDIFDTTP-DLSPFLLPAVRNVHLALHDLGIKKIPVXXXXXXXXXXXXXXPPSSAQFQEPAGSLIMKPLLQFLEDTNSSFLVNVYPYNMYRLN-CEIPLGFALFENYPFNFQDDLIPGVRYTILFDLMVEAVINAM 847
            +V  ++   NI  VR+ + +  +++AF  T+  +++ +PN+ +   + +++    WL   VLP+YP +KI+ I+VG +  D    + S F++PA++NV  AL  +G+ +                 PPS+  F   + +  ++P+L+FL +  S F++++YPY  YR +   + L + LFE+   +   D   G+ Y  +FD  V+A+  A+
Sbjct:   42 KVVQLIQQHNIKYVRIYDYNSQVLKAFGNTSIELMIGVPNSDLNAFSQSQSNVDTWLKNSVLPYYPTTKITYITVGAESTDDPHINASSFVVPAMQNVLTALRKVGLSRRIKVSTTLSLGILSRSFPPSAGAFNS-SYAYFLRPMLEFLAENKSPFMIDLYPYYAYRDSPNNVSLDYVLFES--SSEVIDPNTGLLYKNMFDAQVDALYYAL 250          
BLAST of DY304294 vs. ExPASy Swiss-Prot
Match: E13B_WHEAT (Glucan endo-1,3-beta-glucosidase OS=Triticum aestivum GN=GLC1 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.165e-19
Identity = 70/228 (30.70%), Postives = 111/228 (48.68%), Query Frame = 2
Query:  230 IVTSLNIPAVRLPNSDPSLIRAFAYTNTTILLSIPNAFVPTLAANRT---LAQRWLYRHVLPFYPRSKISLISVGNDIF-DTTPDLSPFLLPAVRNVHLALHDLGIKKIPVXXXXXXXXXXXXXXPPSSAQFQEPAGSLIMKPLLQFLEDTNSSFLVNVYPYNMYRLNCEIPLGFALFENYPFNFQDDLIPGVRYTILFDLMVEAVINAMPLGGS*EYSGDPGRKGEP 901
            + T   I  V+L +++P+ I AFA T  ++ +S+PN+ +P LA   T    A+ W+  ++ P+ P + ++L+  GN+I   T  +L   LLPA+R +  AL   G+  + V               PS+A F+    + +   +LQF  DT S F+VN YPY  YR      L +ALF   P +   D    + YT + D  ++A+  AM   G  +     G  G P
Sbjct:   47 LATKTTIDRVKLFDANPTFISAFAGTPISLAVSLPNSALPALADKATGLDAARSWIRANLSPYVPATNVTLLLAGNEILLSTDTNLILSLLPAMRRLAQALKAEGLTGVRVTTPHYLGILAPSDGIPSNASFRAGYNTKLFPAMLQFHRDTGSPFMVNPYPYFSYRPE---TLNYALFR--PNSGIYDPATKLNYTSMLDAQMDAIYTAMKKLGYGDVDIAVGEAGWP 269          
BLAST of DY304294 vs. ExPASy Swiss-Prot
Match: E134_ARATH (Glucan endo-1,3-beta-glucosidase 4 OS=Arabidopsis thaliana GN=At3g13560 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.571e-18
Identity = 60/211 (28.44%), Postives = 108/211 (51.18%), Query Frame = 2
Query:  221 VASIVTSLNIPAVRLPNSDPSLIRAFAYTNTTILLSIPNAFVPTLAANRTLAQRWLYRHVLPFYPRSKISLISVGNDIFDTTPDLSPFLLPAVRNVHLALHDLGIKKIPVXXXXXXXXXXXXXXPPSSAQFQEPAGSLIMKPLLQFLEDTNSSFLVNVYPYNMY-RLNCEIPLGFALFENY-PFNFQDDLIPGVRYTILFDLMVEAVINAM 847
            + +++ S  I  VRL +++  +++AFA T+  +++ + N  +  +    + A  W+ ++V  + P + I+ I+VG+++  T P ++P L  A+ N+H AL    +                   PPS++ F  P+ +  +  LLQFL++T S F++N YPY  Y   N   PL +ALF+   P     D    + Y  +FD MV+A   +M
Sbjct:   43 IVTLLKSQQITHVRLYDANSHMLKAFANTSIEVMVGVTNEEILKIGRFPSAAAAWVNKNVAAYIPSTNITAIAVGSEVLTTIPHVAPILASALNNIHKALVASNLNFKVKVSSPMSMDIMPKPFPPSTSTF-SPSWNTTVYQLLQFLKNTGSFFMLNAYPYYGYTTANGIFPLDYALFKQLSPVKQIVDPNTLLHYNSMFDAMVDAAYYSM 252          
The following BLAST results are available for this feature:
BLAST of DY304294 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
E1312_ARATH1.418e-2733.02Glucan endo-1,3-beta-glucosidase 12 OS=Arabidopsis... [more]
E132_ARATH3.158e-2735.38Glucan endo-1,3-beta-glucosidase 2 OS=Arabidopsis ... [more]
E137_ARATH2.263e-2538.28Glucan endo-1,3-beta-glucosidase 7 OS=Arabidopsis ... [more]
EA6_ARATH4.719e-2332.06Probable glucan endo-1,3-beta-glucosidase A6 OS=Ar... [more]
E133_ARATH6.815e-2231.60Glucan endo-1,3-beta-glucosidase 3 OS=Arabidopsis ... [more]
E1314_ARATH5.769e-2131.13Glucan endo-1,3-beta-glucosidase 14 OS=Arabidopsis... [more]
GUB_NICPL1.285e-2031.80Lichenase OS=Nicotiana plumbaginifolia GN=GN1 PE=2... [more]
E1313_ARATH2.424e-1927.83Glucan endo-1,3-beta-glucosidase 13 OS=Arabidopsis... [more]
E13B_WHEAT3.165e-1930.70Glucan endo-1,3-beta-glucosidase OS=Triticum aesti... [more]
E134_ARATH1.571e-1828.44Glucan endo-1,3-beta-glucosidase 4 OS=Arabidopsis ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAQ8YE21RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304294 ID=DY304294; Name=DY304294; organism=Citrus clementina; type=EST; length=1264bp
AACAAACATAAACACACGCACTCTCTCTCTCTCTCTCTAGAATCCAAGAA
GCTCATCAATGGCTTCTTCTTCTTCGTTGGCTTTCGCTCTCCTCATCGTC
CTCTCTCTCCTCCACTCAACCTCCTCCTCACGCCCCCTCATCGGCGTCAC
TTACGCGCCCCCCATACTGGCCCCCACCATCGCAAACCCCCATCCCCCAC
CTCCGCCTCCACCGGATCGCGTCGCATCAATCGTAACATCCCTCAACATC
CCCGCCGTCCGCCTCCCAAACTCCGACCCGTCGCTAATCCGAGCCTTCGC
CTACACAAACACCACCATCCTCCTCTCAATTCCCAACGCCTTCGTGCCTA
CGTTAGCCGCTAACCGCACGTTAGCCCAGCGCTGGCTCTACCGCCACGTC
CTCCCCTTCTACCCGCGCTCCAAAATATCACTCATCTCCGTCGGTAACGA
CATCTTCGATACGACGCCGGATTTGTCCCCCTTCCTTCTCCCCGCCGTGA
GAAATGTCCATTTAGCCCTCCACGATCTCGGCATCAAAAAGATCCCCGTC
TCCACCACTTTCTCTTTCTTCAACATCATCACGACGTCGTTTCCCCCTTC
ATCCGCTCAGTTTCAAGAGCCCGCTGGGAGTCTCATCATGAAGCCGCTGC
TTCAGTTCTTGGAAGACACCAACTCGTCTTTCTTGGTCAATGTTTATCCC
TACAACATGTACCGTCTTAACTGCGAGATCCCGTTAGGGTTTGCTCTGTT
CGAAAACTACCCTTTCAATTTCCAAGACGATTTGATCCCCGGGGTGAGGT
ACACAATTCTTTTTGACCTAATGGTGGAAGCTGTGATTAATGCAATGCCA
CTGGGCGGGTCCTGAGAATATTCAGGTGATCCTGGGCGAAAAGGGGAGCC
CAACCTCCGGACCTGCAGCCAATGAATTTCTACCCGACCCCGGCATTTGC
CGAAATGTAATTAGAAGGTTTGGAGGGCCCTTTGAAATCATGAAAAGGGT
CCACCGCTAAAAAAAAAAAAGAATTCACAAAAACCTAAAATTTTAAAAAT
TTGTTTTAAAATAAAAAATTAAAGAAGAAAAAAAAAATTTGGGGGAATTT
TTAGCAAACAAAAATTTAACAACAAAAATTATATAAAAAAGAAAATATAA
CATATGAGGGTCTCTCAAAAGAAGATACAAACCACAAAACCTTGGAAGGA
GGCAATTAAAGGGGGGGATATTAATATAAGCGGCGAAGTTTTCTATTTCA
TTTACGAAGGAACG
back to top