DY304297

Overview
NameDY304297
Unique NameDY304297
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1285
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304297 vs. ExPASy Swiss-Prot
Match: RT4I1_BOVIN (Reticulon-4-interacting protein 1, mitochondrial OS=Bos taurus GN=RTN4IP1 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 3.224e-35
Identity = 100/290 (34.48%), Postives = 150/290 (51.72%), Query Frame = 2
Query:   95 VRFLVTTSCRAVVLP-----RFGGPEVLEVRPNVEVPDLK-PNEVLVRTRAVSINPLDTRMRSGYGRSIF----EPL--------LPLILGRDISGEVAAVGASVRSLTVGQEVFGALHPTAVRGTYADYAVLSEDELTPKPVSVTHADASAIPFAALTAWRALKCAARMSE----GQRXXXXXXXXXXXXXXXQFSVASGCHVSATCGSKSIDRVLAAGAEQAVDYSSKDIELAIKGK--FDAVLDTIGAPETEILGLNFLRR--GGHYMTLHGETAAFADHYGLPLGL 886
            VR + TTS R+ V+P     ++G  EVL    N+ +P +  PNEV+++  A SINP+D  MRSGYG +      +PL         PL LGRD+SG V   G  VR    G EV+ A+ P   +GT +++ V+S +E++ KP S+TH  A+++P+ ALTAW A+     +++    G+R               Q   A   HV+A C   + + V   GA+  +DY S ++E  +K    FD +LD +G   TE   L FL++  G  Y+TL        D  G+  G+
Sbjct:   30 VRKISTTSPRSTVMPAWVIDKYGSNEVLRFTQNMMIPMIHYPNEVIIKVHAASINPIDVNMRSGYGATALNMKRDPLHVKIKGEEFPLTLGRDVSGVVMECGLDVRYFKPGDEVWAAVPPWK-QGTLSEFVVVSGNEVSHKPRSLTHTQAASLPYVALTAWSAINKVGGLNDRNCTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVCSQDASELVRKLGADDVIDYKSGNVEAQLKSSKPFDFILDNVGG-STETWALKFLKKWSGATYVTLVTPFLLNMDRLGIADGM 317          
BLAST of DY304297 vs. ExPASy Swiss-Prot
Match: RT4I1_MOUSE (Reticulon-4-interacting protein 1, mitochondrial OS=Mus musculus GN=Rtn4ip1 PE=1 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 4.211e-35
Identity = 99/289 (34.26%), Postives = 151/289 (52.25%), Query Frame = 2
Query:   98 RFLVTTSCRAVVLP-----RFGGPEVLEVRPNVEVPDLK-PNEVLVRTRAVSINPLDTRMRSGYGRSIF----EPL--------LPLILGRDISGEVAAVGASVRSLTVGQEVFGALHPTAVRGTYADYAVLSEDELTPKPVSVTHADASAIPFAALTAWRALKCAARMSE----GQRXXXXXXXXXXXXXXXQFSVASGCHVSATCGSKSIDRVLAAGAEQAVDYSSKDIELAIKG--KFDAVLDTIGAPETEILGLNFLRR--GGHYMTLHGETAAFADHYGLPLGL 886
            R + TTS R+ V+P     ++G  EVL    N+ +P +  PNEV+++  A S+NP+D  MRSGYG +      +PL         PL LGRD+SG V   G  V+    G EV+ A+ P   +GT +++ V+S +E++ KP S+TH  A+++P+ ALTAW A+     +S+    G+R               Q   A G HV+A C   + + V   GA++ +DY+   +E  +K    FD +LD +G   TE   LNFL++  G  Y+TL        D  G+  G+
Sbjct:   31 RGISTTSARSTVMPAWVIDKYGKNEVLRFTQNMMLPIIHYPNEVIIKVHAASVNPIDVNMRSGYGATALNMKRDPLHMKTKGEEFPLTLGRDVSGVVMECGLDVKYFQPGDEVWAAVPPWK-QGTLSEFVVVSGNEVSHKPKSLTHTQAASLPYVALTAWSAINKVGGLSDKNCKGKRALILGASGGVGTFAIQVMKAWGAHVTAVCSKDASELVRKLGADEVIDYTLGSVEEQLKSLKLFDFILDNVGG-STETWALNFLKKWSGATYVTLVTPFLLNMDRLGVADGM 317          
BLAST of DY304297 vs. ExPASy Swiss-Prot
Match: RT4I1_HUMAN (Reticulon-4-interacting protein 1, mitochondrial OS=Homo sapiens GN=RTN4IP1 PE=1 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 2.311e-33
Identity = 98/290 (33.79%), Postives = 149/290 (51.38%), Query Frame = 2
Query:   95 VRFLVTTSCRAVVLP-----RFGGPEVLEVRPNVEVPDLK-PNEVLVRTRAVSINPLDTRMRSGYGRSIF----EPL--------LPLILGRDISGEVAAVGASVRSLTVGQEVFGALHPTAVRGTYADYAVLSEDELTPKPVSVTHADASAIPFAALTAWRALKCAARMSE----GQRXXXXXXXXXXXXXXXQFSVASGCHVSATCGSKSIDRVLAAGAEQAVDYSSKDIELAIKG--KFDAVLDTIGAPETEILGLNFLRR--GGHYMTLHGETAAFADHYGLPLGL 886
            VR + TTS R+ V+P     ++G  EVL    N+ +P +  PNEV+V+  A S+NP+D  MRSGYG +      +PL         PL LGRD+SG V   G  V+    G EV+ A+ P   +GT +++ V+S +E++ KP S+TH  A+++P+ ALTAW A+     +++    G+R               Q   A   HV+A C   + + V   GA+  +DY S  +E  +K    FD +LD +G   TE    +FL++  G  Y+TL        D  G+  G+
Sbjct:   30 VRRISTTSPRSTVMPAWVIDKYGKNEVLRFTQNMMMPIIHYPNEVIVKVHAASVNPIDVNMRSGYGATALNMKRDPLHVKIKGEEFPLTLGRDVSGVVMECGLDVKYFKPGDEVWAAVPPWK-QGTLSEFVVVSGNEVSHKPKSLTHTQAASLPYVALTAWSAINKVGGLNDKNCTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVCSQDASELVRKLGADDVIDYKSGSVEEQLKSLKPFDFILDNVGG-STETWAPDFLKKWSGATYVTLVTPFLLNMDRLGIADGM 317          
BLAST of DY304297 vs. ExPASy Swiss-Prot
Match: RT4I1_DANRE (Reticulon-4-interacting protein 1 homolog, mitochondrial OS=Danio rerio GN=rtn4ip1 PE=2 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 3.123e-30
Identity = 90/275 (32.73%), Postives = 141/275 (51.27%), Query Frame = 2
Query:  125 AVVLPRFGGPEVLEVRPNVEVPDLK-PNEVLVRTRAVSINPLDTRMRSGYGRSIF----EPL--------LPLILGRDISGEVAAVGASVRSLTVGQEVFGALHPTAVRGTYADYAVLSEDELTPKPVSVTHADASAIPFAALTAWRALKCAARMSEGQRXXXXXXXXXXXXXXXQFSV----ASGCHVSATCGSKSIDRVLAAGAEQAVDYSSKDIELAIKG--KFDAVLDTIGAPETEILGLNFLR--RGGHYMTLHGETAAFADHYGLPLGL 886
            A V+ ++G  +VL    N  +P +  PNEV+V+  A  +NP+D  MR GYG +      +PL         PLILGRD+SGE+   G  V+    G +V+ A+ P   +G+ A++ V+S +E++ KP S+ H +A++IP+ A TAW A+     +++                   F++    A G HV+ TC   +   V   GA+  VDY++  +E  +K   KFD +LD+IG  ETE   L+ L+   G  ++TL        D  GL  G+
Sbjct:   31 AWVIDKYGKNDVLRFTKNAALPIIHYPNEVVVKVHAAGLNPIDISMRGGYGAATMAMKRDPLNISQSGGEFPLILGRDVSGEIMECGLDVKYFKPGDQVWAAIPPWK-QGSLAEFVVVSGNEVSHKPKSLRHDEAASIPYVAATAWSAIVNTGGLNKDNSAKKRVLILGGSGGVGTFAIQMVKAWGAHVTVTCSQNAERLVRDLGADDVVDYTAGPVEKQLKNLEKFDLILDSIGG-ETEKWALDLLKPWSGAKFVTLITPFLQNTDRLGLADGM 303          
BLAST of DY304297 vs. ExPASy Swiss-Prot
Match: RT4I1_DICDI (Reticulon-4-interacting protein 1 homolog, mitochondrial OS=Dictyostelium discoideum GN=rtn4ip1 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 7.450e-24
Identity = 76/259 (29.34%), Postives = 131/259 (50.58%), Query Frame = 2
Query:  155 EVLEVRPNVEVPDLKPNEVLVRTRAVSINPLDTRMRSGYGRSIFEPLL--PLILGRDISGEVAAVGASVRSLTVGQEVFGALHPTAVRGTYADYAVLSEDELTPKPVSVTHADASAIPFAALTAWRA----LKCAARMSEGQRXXXXXXXXXXXXXXXQF--SVASGCHVSATCGSKSIDRVLAAG-AEQAVDYSSKDIELAIKGKFDAVLDTI----GAPETEILGLNFLRRGGHYMTLHGETAAFADHYGLPLGLPI 892
            ++LE + ++ VP    ++VL++  + SINPLD  MR GY  SI +  L  P+ILGR+ SGE+  +G SV    +G +V+ A  P ++ G++ +Y  + E E++ KP ++TH  +++IPFA+LTAW A    L    +++   +               Q      +   VS TC  K  +++       + +DY++  I      KFD + +         E E   ++ L+ GG+ +  +G    F+D  G+  GLP+
Sbjct:   14 DLLEYKTDLPVPKPIKSQVLIKIHSTSINPLDNVMRKGYASSIVDLKLKLPIILGRECSGEIVEIGDSVWDYEIGDQVWSASPPFSM-GSHCEYITVDESEISLKPKNLTHQQSASIPFASLTAWNAIYNVLPTNKKITTNTKILVNGGNGSVGFFILQLLKKHLNVNQVSTTCNIKHFEKLKKLTLVNETIDYNNLKINDNDNNKFDLIFNCYDGGKNQNENEKKCIDALKDGGNLIGFNGPLVKFSDKDGVLSGLPM 271          
BLAST of DY304297 vs. ExPASy Swiss-Prot
Match: QORL_ARATH (Quinone oxidoreductase-like protein At1g23740, chloroplastic OS=Arabidopsis thaliana GN=At1g23740 PE=1 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 8.237e-23
Identity = 72/247 (29.15%), Postives = 126/247 (51.01%), Query Frame = 2
Query:  122 RAVVLPRFGGPEVLEVRPNVEVPDLKPNEVLVRTRAVSINPLDTRMRSGYGRSIFEPLLPLILGRDISGEVAAVGASVRSLTVGQEVFGALHPTAVR-----GTYADYAVLSEDELTPKPVSVTHADASAIPFAALTAWRALKCAARMSEGQRXXXXXXXXXXXXXXXQFS--VASGCHVSATCGSKSIDRVLAAGAEQAVDYSSKDIELAIKGKFDAVLDTIGAPETEILGLNFLRRGGHYMTLHG 841
            +A V   +GG +VL++  N+ VP++K ++VL++  A ++NP+D + R G  ++   P LP + G D++G V  VG++V+ L  G EV+  +   A+      G+ A+Y  + E  L  KP ++  A A+ +P A  TA   L      S G+                Q +  V     V+AT  ++ ++ V + GA+ A+DY+ ++IE  +  K+D V D IG  +  +     ++ GG  + L G
Sbjct:   79 KAWVYSDYGGVDVLKLESNIVVPEIKEDQVLIKVVAAALNPVDAKRRQGKFKATDSP-LPTVPGYDVAGVVVKVGSAVKDLKEGDEVYANVSEKALEGPKQFGSLAEYTAVEEKLLALKPKNIDFAQAAGLPLAIETADEGL-VRTEFSAGKSILVLNGAGGVGSLVIQLAKHVYGASKVAATASTEKLELVRSLGADLAIDYTKENIE-DLPDKYDVVFDAIGMCDKAV---KVIKEGGKVVALTG 319          
BLAST of DY304297 vs. ExPASy Swiss-Prot
Match: QORH_SPIOL (Quinone-oxidoreductase homolog, chloroplastic OS=Spinacia oleracea GN=QOR PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.315e-20
Identity = 62/197 (31.47%), Postives = 101/197 (51.27%), Query Frame = 2
Query:  146 GGPEVLEVRPNVEVPDLKPNEVLVRTRAVSINPLDTRMRSGYGRSIFEPLLPLILGRDISGEVAAVGASVRSLTVGQEVFGALHPTAVRGTYADYAVLSEDELTPKPVSVTHADASAIPFAALTAWRALKCAARM-----SEGQRXXXXXXXXXXXXXXXQFSVASGCHVSATCGSKSIDRVLAAGAEQAVDYSSKD 721
            GG + L+    V VPD K +E+L++  A ++NP+D +++ G  R +     P I G D++GEV   G++V     G +V   L   A  G  A+YAV  E+    +P  V+ A+ +A+P AALTA +AL   A +      E +                Q +     HV+ATCG++++D V   GA++ +DY + +
Sbjct:   16 GGTDALK-HVEVAVPDPKSDELLLKIEAATLNPIDWKIQKGVLRPLLPRKFPTIPGTDVAGEVVQAGSAVNRFKTGDKVVAVL-SHATGGALAEYAVAKENLTVARPPEVSAAEGAALPVAALTAHQALTQFANIKLDGSGERKNILITAASGGVGHYAVQLAKLGNTHVTATCGARNLDFVKGLGADEVLDYKTPE 210          
BLAST of DY304297 vs. ExPASy Swiss-Prot
Match: QOR_MOUSE (Quinone oxidoreductase OS=Mus musculus GN=Cryz PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.608e-18
Identity = 72/247 (29.15%), Postives = 123/247 (49.80%), Query Frame = 2
Query:  122 RAVVLPRFGGPEVLEVRPNVEVPDLKPNEVLVRTRAVSINPLDTRMRSG-YGRSIFEPLLPLILGRDISGEVAAVGASVRSLTVGQEVFGALHPTAVRGTYADYAVLSEDELTPKPVSVTHADASAIPFAALTAWRALKCAARMSEGQRXXXXXXXXXXXXXXXQFSVASGCHVSATCGSKSIDR-VLAAGAEQAVDYSSKD----IELAIKGK---FDAVLDTIGAPETEILGLNFLRRGGHYMTL 835
            RA+ +  FGGPEVL+++ +V VP  + ++VL++  A  +NP++T +RSG Y R   +P LP   G D++G + +VG  V +   G  VF     + V G YA++A+ ++D + P P ++     +A+     TA RAL  +AR   G+                Q + A G  V  T GS+   + VL  GA +  ++   +    I++++  K    D +++ + A E     L  L  GG  + +
Sbjct:    9 RAIRVFEFGGPEVLKLQSDVVVPVPQSHQVLIKVHACGVNPVETYIRSGAYSR---KPALPYTPGSDVAGIIESVGDKVSAFKKGDRVFCY---STVSGGYAEFALAADDTIYPLPETLNFRQGAALGIPYFTACRALFHSARARAGESVLVHGASGGVGLATCQIARAHGLKVLGTAGSEEGKKLVLQNGAHEVFNHKEANYIDKIKMSVGDKDKGVDVIIEML-ANENLSNDLKLLSHGGRVVVV 248          
BLAST of DY304297 vs. ExPASy Swiss-Prot
Match: QOR_BOVIN (Zeta-crystallin OS=Bos taurus GN=CRYZ PE=2 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 1.608e-18
Identity = 70/250 (28.00%), Postives = 116/250 (46.40%), Query Frame = 2
Query:  122 RAVVLPRFGGPEVLEVRPNVEVPDLKPNEVLVRTRAVSINPLDTRMRSGYGRSIFEPLLPLILGRDISGEVAAVGASVRSLTVGQEVFGALHPTAVRGTYADYAVLSEDELTPKPVSVTHADASAIPFAALTAWRALKCAARMSEGQRXXXXXXXXXXXXXXXQFSVASGCHVSATCGSKSIDR-VLAAGAEQAVDYSSKDIELAIKGKFDAVLDTIGAPETEIL-----------GLNFLRRGGHYMTL 835
            RA+ +  FGGPEVL+++ +V VP  K ++VL++ +A  +NP+DT +RSG      +PLLP   G D++G + AVG SV +   G  VF       + G YA+YA+ ++  +   P  +     +AI     TA+RAL  +A +  G+                Q + A G  V  T  ++   + VL  GA +  ++   D         D +  ++G    +++            LN L  GG  + +
Sbjct:    9 RAIRVFEFGGPEVLKLQSDVAVPIPKDHQVLIKVQACGVNPVDTYIRSGTHN--IKPLLPYTPGFDVAGIIEAVGESVSAFKKGDRVFTT---RTISGGYAEYALAADHTVYTLPEKLDFKQGAAIGIPYFTAYRALLHSACVKPGESVLVHGASGGVGIAACQIARAYGLKVLGTASTEEGQKIVLENGAHKVFNHKEADY-------IDKIKKSVGEKGVDVIIEMLANVNLSNDLNLLSHGGRVIVV 246          
BLAST of DY304297 vs. ExPASy Swiss-Prot
Match: QOR_CAVPO (Quinone oxidoreductase OS=Cavia porcellus GN=CRYZ PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.100e-18
Identity = 65/197 (32.99%), Postives = 99/197 (50.25%), Query Frame = 2
Query:  122 RAVVLPRFGGPEVLEVRPNVEVPDLKPNEVLVRTRAVSINPLDTRMRSGYGRSIFEPLLPLILGRDISGEVAAVGASVRSLTVGQEVFGALHPTAVRGTYADYAVLSEDELTPKPVSVTHADASAIPFAALTAWRALKCAARMSEGQRXXXXXXXXXXXXXXXQFSVASGCHVSATCGSKSIDR-VLAAGAEQAVDY 709
            RA+ +  FGGPEVL+V+ +V VP  K ++VL++  A  INP++T +RSG    I  PLLP   G D++G V ++G  V +   G  VF     + + G YA+YA+ S+  +   P  +     +AI     TA RAL  +AR   G+                Q + A G  V  T G++   + VL  GA +  ++
Sbjct:    9 RAIRVFEFGGPEVLKVQSDVAVPIPKDHQVLIKVHACGINPVETYIRSGTYTRI--PLLPYTPGTDVAGVVESIGNDVSAFKKGDRVFTT---STISGGYAEYALASDHTVYRLPEKLDFRQGAAIGIPYFTACRALFHSARAKAGESVLVHGASGGVGLAACQIARAYGLKVLGTAGTEEGQKVVLQNGAHEVFNH 200          
The following BLAST results are available for this feature:
BLAST of DY304297 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
RT4I1_BOVIN3.224e-3534.48Reticulon-4-interacting protein 1, mitochondrial O... [more]
RT4I1_MOUSE4.211e-3534.26Reticulon-4-interacting protein 1, mitochondrial O... [more]
RT4I1_HUMAN2.311e-3333.79Reticulon-4-interacting protein 1, mitochondrial O... [more]
RT4I1_DANRE3.123e-3032.73Reticulon-4-interacting protein 1 homolog, mitocho... [more]
RT4I1_DICDI7.450e-2429.34Reticulon-4-interacting protein 1 homolog, mitocho... [more]
QORL_ARATH8.237e-2329.15Quinone oxidoreductase-like protein At1g23740, chl... [more]
QORH_SPIOL1.315e-2031.47Quinone-oxidoreductase homolog, chloroplastic OS=S... [more]
QOR_MOUSE1.608e-1829.15Quinone oxidoreductase OS=Mus musculus GN=Cryz PE=... [more]
QOR_BOVIN1.608e-1828.00Zeta-crystallin OS=Bos taurus GN=CRYZ PE=2 SV=2[more]
QOR_CAVPO2.100e-1832.99Quinone oxidoreductase OS=Cavia porcellus GN=CRYZ ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ8YE24RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304297 ID=DY304297; Name=DY304297; organism=Citrus clementina; type=EST; length=1285bp
CGGATCGCAATTCTATACCAAAACCAGAACCAAAATGCAAATCCTAAAAG
CCCGCAAGAGTGTTAACGACTATTTGGTTAGTCCGTTACGGTTCGTGCGA
TTCCTAGTTACCACTAGCTGCAGGGCAGTGGTGCTGCCGCGGTTTGGGGG
GCCGGAGGTCCTGGAGGTGCGGCCAAATGTGGAGGTTCCGGATCTCAAGC
CCAATGAGGTCCTCGTTCGTACCCGAGCTGTCTCTATCAATCCACTCGAT
ACAAGAATGCGATCAGGCTATGGTCGTTCGATATTTGAACCACTTCTACC
TCTCATTTTGGGTCGCGATATTAGTGGTGAAGTTGCAGCTGTTGGAGCTT
CAGTGAGGTCGCTGACTGTCGGGCAAGAAGTGTTTGGTGCATTGCATCCA
ACTGCTGTGAGAGGCACTTATGCTGACTATGCTGTTCTGTCAGAAGATGA
ACTCACTCCAAAGCCAGTATCGGTTACTCATGCGGATGCAAGTGCAATTC
CTTTTGCTGCACTGACTGCATGGCGTGCTCTAAAATGTGCTGCTAGGATG
TCTGAGGGGCAAAGGTTATTAGTTCTGGGTGGTGGAGGAGCAGTAGGTTT
TGCTGCAGTACAGTTTTCAGTAGCTTCAGGGTGTCATGTTAGTGCTACTT
GTGGAAGCAAAAGTATAGATCGAGTACTGGCAGCTGGTGCTGAGCAAGCT
GTTGACTATTCTTCTAAGGACATTGAATTGGCAATAAAGGGGAAGTTTGA
TGCAGTTTTGGACACTATTGGTGCTCCAGAAACTGAAATATTGGGCCTCA
ATTTTTTGAGGCGGGGTGGACATTATATGACACTTCACGGCGAGACAGCA
GCATTTGCTGATCATTATGGACTACCACTCGGGCTGCCTATAGCTACAAC
TGTTCCACTGGAAAAACCGATGCCCACCTGGGTATTTCTATGGAAATAAC
TATTCATACCTATACATGCCGGCCTGATGCAGAAGGGGTTAAAGGAGATT
CCCCAGCTTACTTAAACTGGGAAAACTTCAAAAACCCGGTTGAATAAACC
TTTTTCACTTGACCCCAAGTTAAAAAAAGCCCCCATGAGGGCCCAAGAAC
AAAAGGCCCCATCTCCCGGGGTAAAAGTAATTTTCGGGGAAATTTGAATT
GGAATAATTTGAAAAACTATTTGAACCCCCAAAAAATTCCCCCTCTCCAC
CACTTTTTTCCGCCCCCCAAATGGGGGGTTTTGTTAAGAGGGGGCCCCCT
CCCCCTCCGGCCCCCTCCTTTTTTTTTTCGCCCCC
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