DY304300

Overview
NameDY304300
Unique NameDY304300
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1275
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304300 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 448.358 bits (1152), Expect = 4.329e-125
Identity = 222/252 (88.10%), Postives = 230/252 (91.27%), Query Frame = 3
Query:   57 MATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPV--SSSASFKVEAK-GEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTLSGN 803
            MATVTTQASAA+F PC  KSRFL GSSGKLNR VA +PV  S SASFKVEAK GEWLPGLASP YL GSLPGDNGFDPLGLAEDPENL+W+VQAELVN RWAMLGV GMLLPEVFT IGIINVP+WY AGK EYFASSSTLFVIEFIL HYVEIRRWQDIKNPGSVNQDPIFKQYSLP  EVGYPGGIFNPLNFAPT EAKEKE+ANGRLAMLAFLGFI+QHNVTGKGPF+NLLQHISDPWHNTIVQTL GN
Sbjct:    1 MATVTTQASAAIFGPCGLKSRFLGGSSGKLNRGVAFRPVGCSPSASFKVEAKKGEWLPGLASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYAAGKEEYFASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGGIFNPLNFAPTLEAKEKEIANGRLAMLAFLGFIIQHNVTGKGPFDNLLQHISDPWHNTIVQTLGGN 252          
BLAST of DY304300 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 447.203 bits (1149), Expect = 9.643e-125
Identity = 217/251 (86.45%), Postives = 230/251 (91.63%), Query Frame = 3
Query:   57 MATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPVSSSA---SFKVEAK-GEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTLS 797
            MATVTT ASA++FRPC SK RFLTGSSG+LNR+++   + SSA   SFKVEAK GEWLPGLASP YL GSL GDNGFDPLGLAEDPENLKW+VQAELVN RWAMLGV GMLLPEVFTKIGIINVP+WYDAGK +YFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLP  EVGYPGGIFNPLNFAPT EAKEKELANGRLAMLAFLGF+VQHNVTGKGPFENLLQH+SDPWHNTIVQT +
Sbjct:    1 MATVTTHASASIFRPCTSKPRFLTGSSGRLNRDLSFTSIGSSAKTSSFKVEAKKGEWLPGLASPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPEWYDAGKEQYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPKGEVGYPGGIFNPLNFAPTQEAKEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHNTIVQTFN 251          
BLAST of DY304300 vs. ExPASy Swiss-Prot
Match: CB120_HORVU (Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment) OS=Hordeum vulgare GN=LHC Ib-20 PE=1 SV=1)

HSP 1 Score: 317.775 bits (813), Expect = 8.824e-86
Identity = 153/212 (72.17%), Postives = 174/212 (82.08%), Query Frame = 3
Query:  168 PVSSSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDA-GKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTLSG 800
            P S+     V+AKG WLPGL SP YL+GSL GDNGFDPL LAEDPE+L+W+VQA++VN RWAMLGV GML+PEV TK G++N P+W    GK  YFASSST   +  +   YVEIRRWQDIKNPGSVNQDPIFK YSLPP+E GYPG +FNPLNFAP  E KEKELANGRLAMLAFLGF+VQHNV GKGPFENL QH++DPWHNTI+QT+SG
Sbjct:   21 PRSTRRDVAVQAKGSWLPGLQSPAYLDGSLEGDNGFDPLALAEDPEDLRWFVQADVVNGRWAMLGVAGMLIPEVLTKAGLMNAPEWLRLPGKETYFASSSTALRVH-MSSTYVEIRRWQDIKNPGSVNQDPIFKSYSLPPHECGYPGRVFNPLNFAPL-ENKEKELANGRLAMLAFLGFLVQHNVHGKGPFENLQQHLADPWHNTIIQTISG 230          
BLAST of DY304300 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 2.858e-60
Identity = 121/240 (50.42%), Postives = 152/240 (63.33%), Query Frame = 3
Query:  105 ASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGE---WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGI-FNPLNF-----APTDEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTLS 797
            A+K+ FL G   ++++ +A     S A   V A  +   W PG   P +L+GSLPGD GFDPLGL  DPE+LKW  QAELV+SRWAMLG  G+ +PE  TKIG++N P WY AG+ EYF  ++TLFVIE +L  + E RRW DI  PG VN DPIF    L   +VGYPGG+ F+PL +     A   E + KE+ NGRLAMLA +G   QH  TG GP +NL  H++DP H TI    S
Sbjct:   29 ATKASFLGGKRLRVSKFIAPVGSRSVAVSAVAADPDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGVLNTPSWYTAGEQEYFTDTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAFS 268          
BLAST of DY304300 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 5.390e-59
Identity = 116/239 (48.54%), Postives = 151/239 (63.18%), Query Frame = 3
Query:  108 SKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGE---WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGI-FNPLNF-----APTDEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTLS 797
            +K+ FL G   ++++        S+ +  V A  +   W PG   P +L+GSLPGD GFDPLGLA DPE+L+W  QAELV+ RWAMLG  G+ +PE+ TKIGI+N P WY AG+ EYF  ++TLF++E +L  + E RRW DI  PG VN DPIF    L   +VGYPGG+ F+PL +     A   E + KE+ NGRLAMLA +G   QH  TG GP +NL  H++DP H TI    S
Sbjct:   30 TKASFLGGRRLRVSKYSTTPTARSATTVCVAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGILNTPSWYTAGEQEYFTDTTTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAFS 268          
BLAST of DY304300 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 3.075e-38
Identity = 106/274 (38.69%), Postives = 149/274 (54.38%), Query Frame = 3
Query:   60 ATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENL------KWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQ-----WYD------AGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLP-------PNEVGYPGG-IFNPLNFAPTD----EAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTL 794
            ++++T A AA     +  S+ +T  +  + R  +  PV   A+ ++     W     S +YL+G LPGD GFDPLGL+ DPE        KW    E++N R+AMLG  G + PE+  K G+I  PQ     W+       AG   Y+A + TLFV+E  L  + E RR+QD   PGS+      KQY L          +  YPGG +FNPL F   +    E K KE+ NGRLAMLA LG+ +Q  VTG GP++NLL H++DP +N ++ +L
Sbjct:   10 SSISTSAEAARQIIGSRISQSVTRKASFVVRAASTPPVKQGANRQL-----WFASKQSLSYLDGRLPGDFGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAGLI--PQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMG-----KQYFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNNVLTSL 270          
BLAST of DY304300 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.993e-37
Identity = 97/223 (43.50%), Postives = 126/223 (56.50%), Query Frame = 3
Query:  213 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENL------KWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQ-----WYD------AGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLP-------PNEVGYPGG-IFNPLNFAPTD----EAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTL 794
            W     S +YL+GSLPGD GFDPLGL+ DPE        +W    E++N R+AMLG VG + PE   K+G+I  PQ     W+       AG   Y+A + TLFV+E  L  + E RR+QD   PGS+      KQY L             YPGG  FNPL F   +    E K KE+ NGRLAMLA LG+ +Q  VTG GP++NLL H++DP +N ++ +L
Sbjct:   58 WFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLI--PQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMG-----KQYFLGLEKGFGGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHVADPVNNNVLTSL 272          
BLAST of DY304300 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 9.259e-35
Identity = 87/215 (40.47%), Postives = 120/215 (55.81%), Query Frame = 3
Query:  177 SSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQW--YDAGKAEY------FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNF----APTDEAKEKELANGRLAMLAFLGFIVQHNV-TGKGPFENLLQHISDPWHNTI 782
            ++ S +V    EW PG   P +L+GS PGD GFDPLGLA  PEN + + ++E+ + RWAML V G+L+PE       +   +W     G+A Y      + +  T+  IEF+   + E +R        ++ +DP  K+         YPGG F+PL F    A  +E K KE+ NGRLAMLAF+GF VQ +   G GP ENL  H++DPWHN I
Sbjct:   36 ATTSGRVTMSAEWFPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGLGNWVKAQEWAALPDGQATYLGNPVPWGNLPTILAIEFLAIAFAEQQR--------TMEKDPEKKK---------YPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 233          
BLAST of DY304300 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 2.063e-34
Identity = 86/234 (36.75%), Postives = 127/234 (54.27%), Query Frame = 3
Query:  120 FLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQW--YDAGKAEY------FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNF----APTDEAKEKELANGRLAMLAFLGFIVQHNV-TGKGPFENLLQHISDPWHNTI 782
            FL+ +  K    + +   +++   +     +W+PG   P+YL+GS PGD GFD LGL E P NL+ Y ++EL++ RWAML V G+++PE       +   +W     G+A Y      + +  T+  IEF+   +VE +R        S+ +D   K+         YPGG F+PL +    A  +E K KE+ NGRLA+LA +GF VQ +   G GP ENL  H++DPWHN I
Sbjct:   18 FLSSTKSKFAAAMPVYVGATNFMSRFSMSADWMPGQPRPSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEALGLGNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQR--------SMEKDSEKKK---------YPGGAFDPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADPWHNNI 234          
BLAST of DY304300 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 8.394e-28
Identity = 75/204 (36.76%), Postives = 107/204 (52.45%), Query Frame = 3
Query:  234 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQ--WY-------DAGKAEYFASSSTLFVIEFILFHYVEI--RRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTLSG 800
            P YLNG + GD G+DP GL + PEN   Y   EL+++RWAMLG  G ++PE   K G    P+  W+       D     YF  +  + ++  ++   V +    +  I N G   +D +            +PGG F+PL  A   E     K KE+ NGRLAM A LGF +Q  VTG+GP ENL +H+SDP+ N ++  ++G
Sbjct:   82 PEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVAEVVLLGGAEYYRITN-GLDFEDKL------------HPGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVIAG 272          
The following BLAST results are available for this feature:
BLAST of DY304300 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
CB24_PEA4.329e-12588.10Chlorophyll a-b binding protein P4, chloroplastic ... [more]
CB24_ARATH9.643e-12586.45Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB120_HORVU8.824e-8672.17Chlorophyll a-b binding protein 1B-20, chloroplast... [more]
CB12_PETHY2.858e-6050.42Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB12_SOLLC5.390e-5948.54Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB13_SOLLC3.075e-3838.69Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB23_PEA1.993e-3743.50Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB121_HORVU9.259e-3540.47Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB11_SOLLC2.063e-3436.75Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB26_ARATH8.394e-2836.76Chlorophyll a-b binding protein CP26, chloroplasti... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ8YF03RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304300 ID=DY304300; Name=DY304300; organism=Citrus clementina; type=EST; length=1275bp
CTTCTTCCACCACCACCACTCCTGCACTACGAGGCTCATAACTCTCGTCG
GGAAACATGGCAACCGTCACAACACAAGCCTCGGCCGCTGTGTTCCGGCC
ATGCGCATCCAAATCCAGGTTCCTTACTGGGTCTTCGGGTAAATTAAATA
GGGAAGTGGCCTTGAAACCAGTGAGCTCAAGCGCTTCTTTCAAAGTTGAA
GCCAAGGGGGAGTGGTTACCGGGCTTGGCCTCGCCAACTTACCTCAACGG
CAGCCTCCCCGGTGACAATGGATTTGACCCCTTGGGGCTTGCCGAGGATC
CTGAGAACTTGAAGTGGTATGTGCAAGCCGAGCTTGTGAATTCGCGCTGG
GCCATGTTGGGTGTTGTTGGAATGTTGTTGCCCGAAGTTTTCACAAAGAT
TGGAATTATTAATGTTCCTCAATGGTATGATGCTGGGAAGGCTGAGTACT
TTGCATCATCATCGACCCTTTTCGTGATCGAGTTCATCTTGTTCCACTAT
GTGGAGATAAGAAGATGGCAAGACATAAAGAACCCAGGAAGTGTCAACCA
AGACCCCATTTTCAAGCAGTACAGCTTGCCTCCAAACGAAGTTGGGTACC
CCGGTGGCATCTTCAACCCACTCAACTTTGCACCCACTGATGAGGCAAAG
GAGAAGGAGCTTGCCAATGGGAGATTGGCAATGTTGGCATTCTTGGGATT
TATTGTTCAGCACAATGTGACAGGCAAAGGGCCATTTGAAAACCTCCTGC
AACATATCTCTGACCCATGGCACAACACCATCGTCCAGACACTTAGTGGT
AATTAATCAAAGATGGATTGGCAATTCGGGATCCTGTTTCTTTCTTTTGT
ACCCTGAATCTGTAGTTTTTGATTGAGATTTGAGCATCAATGTAAACATG
GAAACCCCTCATGGTAAGGGGAACTATGATTGGATTTAAATTATCATTTT
ACACCAAAAAAAAAAAAAAAAAAAAAAAAAGGGCGGCCGCCTCTAAAATA
TTCCTTCAAGGGGCCCCAACCTTACCCCTTACCCCGCCTTTCCTTGGAAA
AAATTGGTCCCCTTAAATTGAATTCTTAATTAAAAACTTAAGGCACCTGG
CCCCTCCTTTTTACAAACCTTCGGTAACCGGGAAAAAACTCGCTCACCTT
TGGGGAAACTTTTTGGTAAAAAGAAAACTATAACTTTTCCTGTGGGGTGT
GGGTAAAAAAAATTTTGTGAAACAAAACAACCACCCCCATAAAACAAAAA
AAAATTTTTTATAAAAAAAGCCTCC
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