DY304304

Overview
NameDY304304
Unique NameDY304304
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1288
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304304 vs. ExPASy Swiss-Prot
Match: RD23C_ARATH (Putative DNA repair protein RAD23-3 OS=Arabidopsis thaliana GN=RAD23-3 PE=2 SV=2)

HSP 1 Score: 197.978 bits (502), Expect = 1.032e-49
Identity = 106/161 (65.84%), Postives = 118/161 (73.29%), Query Frame = 3
Query:  483 VYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGN-GQAANSXXXXXXXXXXXXXXSSGPNANPLDLFPQGLPDVGSGGAGAGSPDFLTYTSQFQVLRTMVAGNPQFWSPGFKNLGKQNPSQVR 962
            VYG AASNL AG+NLE  IQQILDMGGGTWDR+TVV ALRAA+NNPERAVEYLY+GIPEQAEV PVAR P + GQ AN               +SGPNANPLDLFPQGLP+VG G  GAG+ DFL  + QFQ LR MV  NPQ   P  + LGKQNP+ +R
Sbjct:  173 VYGQAASNLAAGSNLESTIQQILDMGGGTWDRETVVLALRAAFNNPERAVEYLYTGIPEQAEVPPVARPPASAGQPAN---PPAQTQQPAAAPASGPNANPLDLFPQGLPNVG-GNPGAGTLDFLRNSQQFQALRAMVQANPQVLQPMLQELGKQNPNLMR 329          

HSP 2 Score: 124.405 bits (311), Expect = 1.451e-27
Identity = 59/76 (77.63%), Postives = 71/76 (93.42%), Query Frame = 3
Query:   60 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNK 287
            IFVKTLKGT F++EVKPED+V DVK  IE+VQG+DVYPAA+QMLI+QGKVLKD+TT+EENKVAENSF+VIM+ K+K
Sbjct:    3 IFVKTLKGTHFEIEVKPEDSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETTIEENKVAENSFIVIMMNKSK 78          
BLAST of DY304304 vs. ExPASy Swiss-Prot
Match: RD23D_ARATH (Putative DNA repair protein RAD23-4 OS=Arabidopsis thaliana GN=RAD23-4 PE=2 SV=2)

HSP 1 Score: 197.593 bits (501), Expect = 1.348e-49
Identity = 100/160 (62.50%), Postives = 113/160 (70.62%), Query Frame = 3
Query:  483 VYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSXXXXXXXXXXXXXXSSGPNANPLDLFPQGLPDVGSGGAGAGSPDFLTYTSQFQVLRTMVAGNPQFWSPGFKNLGKQNPSQVR 962
            VYG AASNLVAG  LE  +QQILDMGGG+WDRDTVVRALRAA+NNPERAVEYLYSGIP QAE+ PVA+AP  G+ A +              + GPNANPL+LFPQG+P     GAGAG+ DFL  + QFQ LR MV  NPQ   P  + LGKQNP  VR
Sbjct:  134 VYGQAASNLVAGTTLESTVQQILDMGGGSWDRDTVVRALRAAFNNPERAVEYLYSGIPAQAEIPPVAQAPATGEQAANPLAQPQQAAAPAAATGGPNANPLNLFPQGMP-AADAGAGAGNLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPQLVR 292          

HSP 2 Score: 108.227 bits (269), Expect = 1.076e-22
Identity = 54/76 (71.05%), Postives = 66/76 (86.84%), Query Frame = 3
Query:   60 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNK 287
            IFVKTL G++F++EVKP D V DVK  IETV+G++ YPAA+QMLI+QGKVLKD+TTLEEN V ENSF+VIML+K K
Sbjct:    3 IFVKTLSGSNFEIEVKPADKVSDVKTAIETVKGAE-YPAAKQMLIHQGKVLKDETTLEENNVVENSFIVIMLSKTK 77          
BLAST of DY304304 vs. ExPASy Swiss-Prot
Match: RAD23_ORYSJ (Probable DNA repair protein RAD23 OS=Oryza sativa subsp. japonica GN=RAD23 PE=1 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 9.065e-38
Identity = 84/157 (53.50%), Postives = 101/157 (64.33%), Query Frame = 3
Query:  486 YGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAE--VQPVARAPGNGQAANSXXXXXXXXXXXXXXSSGPNANPLDLFPQGLPDVGSGGAGAGSPDFLTYTSQFQVLRTMVAGNPQFWSPGFKNLGKQNP 950
            YG A SNLVAG+NLE  IQ IL+MGGG WDRD V+ AL AA+NNPERAVEYLYSG+PEQ +  V P +  P N   A+               SSGPNA+PLDLFPQ LP+  +  AG G+ D L   +QF+ L ++V  NPQ   P  + LGKQNP
Sbjct:  145 YGQATSNLVAGSNLEATIQSILEMGGGIWDRDIVLHALSAAFNNPERAVEYLYSGVPEQMDIPVPPPSIQPANPTQASQ----ATQPAAPSILSSGPNASPLDLFPQALPNASTDAAGLGNLDALRNNAQFRTLLSLVQANPQILQPLLQELGKQNP 297          

HSP 2 Score: 100.523 bits (249), Expect = 2.243e-20
Identity = 51/76 (67.11%), Postives = 59/76 (77.63%), Query Frame = 3
Query:   60 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNK 287
            I VKTLKG++F +EV     V DVK  IET QG  +YPA QQMLI+QGKVLKDDTTL+ENKV ENSF+VIML + K
Sbjct:    3 ISVKTLKGSTFQIEVDSAQKVADVKRIIETTQGQHIYPAEQQMLIHQGKVLKDDTTLDENKVLENSFLVIMLRQGK 78          
BLAST of DY304304 vs. ExPASy Swiss-Prot
Match: RD23A_ARATH (Putative DNA repair protein RAD23-1 OS=Arabidopsis thaliana GN=RAD23-1 PE=2 SV=3)

HSP 1 Score: 154.451 bits (389), Expect = 1.309e-36
Identity = 86/163 (52.76%), Postives = 107/163 (65.64%), Query Frame = 3
Query:  486 YGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQ---PVARAPGNGQAANSXXXXXXXXXXXXXXSSGPNANPLDLFPQGLPDVGSGGAG-AGSPDFLTYTSQFQVLRTMVAGNPQFWSPGFKNLGKQNPSQVR 962
            YG AAS LV+G++LE  +QQI++MGGG+WD++TV RALRAAYNNPERAV+YLYSGIP+ AEV    P A+  G+G A                 S GPN++PLDLFPQ    V + G+G  G+ +FL    QFQ LRTMV  NPQ   P  + LGKQNP  +R
Sbjct:  135 YGQAASTLVSGSSLEQMVQQIMEMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPQTAEVAVPVPEAQIAGSGAA------------PVAPASGGPNSSPLDLFPQ--ETVAAAGSGDLGTLEFLRNNDQFQQLRTMVHSNPQILQPMLQELGKQNPQLLR 283          

HSP 2 Score: 91.2781 bits (225), Expect = 1.361e-17
Identity = 43/74 (58.11%), Postives = 55/74 (74.32%), Query Frame = 3
Query:   66 VKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNK 287
            VKTLKG+ F++ V P DT+  VK  IE  QG D YP  QQ+LI+ GKVLKD+T+L ENKV E  F+V+ML+K+K
Sbjct:    5 VKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLVENKVTEEGFLVVMLSKSK 78          
BLAST of DY304304 vs. ExPASy Swiss-Prot
Match: RD23B_ARATH (Putative DNA repair protein RAD23-2 OS=Arabidopsis thaliana GN=RAD23-2 PE=2 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 2.729e-34
Identity = 79/159 (49.69%), Postives = 99/159 (62.26%), Query Frame = 3
Query:  486 YGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSXXXXXXXXXXXXXXSSGPNANPLDLFPQGLPDVGSGGAGAGSPDFLTYTSQFQVLRTMVAGNPQFWSPGFKNLGKQNPSQVR 962
            YG AAS LV+G+++E  +QQI++MGGG+WD++TV RALRAAYNNPERAV+YLYSGIPE   + P     G G                   S GPN++PLDLFPQ      +GG   G+ +FL    QFQ LR+MV  NPQ   P  + LGKQNP  +R
Sbjct:  133 YGQAASTLVSGSSIEQMVQQIMEMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPETVTI-PATNLSGVGSGRE---------LTAPPPSGGPNSSPLDLFPQEAVSDAAGG-DLGTLEFLRGNDQFQQLRSMVNSNPQILQPMLQELGKQNPQLLR 280          

HSP 2 Score: 90.1225 bits (222), Expect = 3.032e-17
Identity = 43/74 (58.11%), Postives = 54/74 (72.97%), Query Frame = 3
Query:   66 VKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNK 287
            VKTLKG+ F++ V P DT+  VK  IE  Q  D YP  QQ+LI+ GKVLKD+TTL ENKV E  F+V+ML+K+K
Sbjct:    5 VKTLKGSHFEIRVLPTDTIMAVKKNIEDSQSKDNYPCGQQLLIHNGKVLKDETTLVENKVTEEGFLVVMLSKSK 78          
BLAST of DY304304 vs. ExPASy Swiss-Prot
Match: RD23B_RAT (UV excision repair protein RAD23 homolog B OS=Rattus norvegicus GN=Rad23b PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.137e-14
Identity = 37/76 (48.68%), Postives = 55/76 (72.37%), Query Frame = 3
Query:   60 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNK 287
            + +KTL+  +F +++ PE+TV  +K KIE+ +G D +P A Q LIY GK+L DDT L+E K+ E +FVV+M+TK K
Sbjct:    3 VTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALKEYKIDEKNFVVVMVTKPK 78          

HSP 2 Score: 71.2478 bits (173), Expect = 1.457e-11
Identity = 48/164 (29.27%), Postives = 74/164 (45.12%), Query Frame = 3
Query:  483 VYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSXXXXXXXXXXXXXXSSGPNANPLDLFPQGLPDVGSGGAGAGSP-DFLTYTSQFQVLRTMVAGNPQFWSPGFKNLGKQNPSQVRAYS 971
            ++  A S LV G + E  + +I+ MG   ++R+ V+ ALRA++NNP+RAVEYL  GIP   E Q V   P                      S+G   +P            +     G P +FL    QFQ +R ++  NP       + +G++NP  ++  S
Sbjct:  176 LFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPPPQA------------------VSTGTPQSPAVAAAAATTTATTTTTSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQIS 318          
BLAST of DY304304 vs. ExPASy Swiss-Prot
Match: RD23B_MOUSE (UV excision repair protein RAD23 homolog B OS=Mus musculus GN=Rad23b PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.137e-14
Identity = 37/76 (48.68%), Postives = 55/76 (72.37%), Query Frame = 3
Query:   60 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNK 287
            + +KTL+  +F +++ PE+TV  +K KIE+ +G D +P A Q LIY GK+L DDT L+E K+ E +FVV+M+TK K
Sbjct:    3 VTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALKEYKIDEKNFVVVMVTKPK 78          

HSP 2 Score: 71.2478 bits (173), Expect = 1.457e-11
Identity = 48/164 (29.27%), Postives = 74/164 (45.12%), Query Frame = 3
Query:  483 VYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSXXXXXXXXXXXXXXSSGPNANPLDLFPQGLPDVGSGGAGAGSP-DFLTYTSQFQVLRTMVAGNPQFWSPGFKNLGKQNPSQVRAYS 971
            ++  A S LV G + E  + +I+ MG   ++R+ V+ ALRA++NNP+RAVEYL  GIP   E Q V   P                      S+G   +P            +     G P +FL    QFQ +R ++  NP       + +G++NP  ++  S
Sbjct:  176 LFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPPPQA------------------VSTGTPQSPAVAAAAATTTATTTTTSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQIS 318          
BLAST of DY304304 vs. ExPASy Swiss-Prot
Match: RD23B_HUMAN (UV excision repair protein RAD23 homolog B OS=Homo sapiens GN=RAD23B PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.137e-14
Identity = 37/76 (48.68%), Postives = 55/76 (72.37%), Query Frame = 3
Query:   60 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNK 287
            + +KTL+  +F +++ PE+TV  +K KIE+ +G D +P A Q LIY GK+L DDT L+E K+ E +FVV+M+TK K
Sbjct:    3 VTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPK 78          

HSP 2 Score: 71.633 bits (174), Expect = 1.116e-11
Identity = 49/164 (29.88%), Postives = 79/164 (48.17%), Query Frame = 3
Query:  483 VYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSXXXXXXXXXXXXXXSSGPNANPLDLFPQGLPDVGSGGAGAGSP-DFLTYTSQFQVLRTMVAGNPQFWSPGFKNLGKQNPSQVRAYS 971
            ++  A S LV G + E  + +I+ MG   ++R+ V+ ALRA++NNP+RAVEYL  GIP   E Q V   P   QAA+               +  P ++ +           +  +  G P +FL    QFQ +R ++  NP       + +G++NP  ++  S
Sbjct:  176 LFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPP---QAAS---------------TGAPQSSAVAAAAATTTATTTTTSSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQIS 318          
BLAST of DY304304 vs. ExPASy Swiss-Prot
Match: RD23B_BOVIN (UV excision repair protein RAD23 homolog B OS=Bos taurus GN=RAD23B PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 6.989e-14
Identity = 36/76 (47.37%), Postives = 55/76 (72.37%), Query Frame = 3
Query:   60 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNK 287
            + +KTL+  +F +++ P++TV  +K KIE+ +G D +P A Q LIY GK+L DDT L+E K+ E +FVV+M+TK K
Sbjct:    3 VTLKTLQQQTFKIDIDPDETVRALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPK 78          
BLAST of DY304304 vs. ExPASy Swiss-Prot
Match: RD23A_HUMAN (UV excision repair protein RAD23 homolog A OS=Homo sapiens GN=RAD23A PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 6.542e-12
Identity = 33/76 (43.42%), Postives = 52/76 (68.42%), Query Frame = 3
Query:   60 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNK 287
            I +KTL+  +F + ++P++TV  +K KIE  +G D +P A Q LIY GK+L DD  + + ++ E +FVV+M+TK K
Sbjct:    5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTK 80          
The following BLAST results are available for this feature:
BLAST of DY304304 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
RD23C_ARATH1.032e-4965.84Putative DNA repair protein RAD23-3 OS=Arabidopsis... [more]
RD23D_ARATH1.348e-4962.50Putative DNA repair protein RAD23-4 OS=Arabidopsis... [more]
RAD23_ORYSJ9.065e-3853.50Probable DNA repair protein RAD23 OS=Oryza sativa ... [more]
RD23A_ARATH1.309e-3652.76Putative DNA repair protein RAD23-1 OS=Arabidopsis... [more]
RD23B_ARATH2.729e-3449.69Putative DNA repair protein RAD23-2 OS=Arabidopsis... [more]
RD23B_RAT3.137e-1448.68UV excision repair protein RAD23 homolog B OS=Ratt... [more]
RD23B_MOUSE3.137e-1448.68UV excision repair protein RAD23 homolog B OS=Mus ... [more]
RD23B_HUMAN3.137e-1448.68UV excision repair protein RAD23 homolog B OS=Homo... [more]
RD23B_BOVIN6.989e-1447.37UV excision repair protein RAD23 homolog B OS=Bos ... [more]
RD23A_HUMAN6.542e-1243.42UV excision repair protein RAD23 homolog A OS=Homo... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAQ8YF07RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304304 ID=DY304304; Name=DY304304; organism=Citrus clementina; type=EST; length=1288bp
ATAAAATATTTGAATTCGAGAGACCCAACGGAACGTAGAAAAAGAAGAAG
ATGATGAAGATTTTCGTTAAAACTCTCAAAGGAACTTCTTTCGACGTCGA
AGTGAAACCTGAAGACACGGTCTTTGATGTGAAAATGAAGATAGAAACTG
TTCAAGGATCGGATGTTTATCCTGCTGCACAACAGATGCTGATTTATCAG
GGGAAAGTCCTCAAAGATGATACTACACTGGAAGAGAACAAAGTAGCTGA
AAATAGTTTTGTTGTTATTATGTTAACAAAGAATAAGAGACCAACTGGTG
AAGGTTCAACTACGTCAACTGCGACTACAAAGGCTCCCCAGTCAAGTGCC
CCAACCCCTGCAGTGACCCCAGCAACAGCTCCTCAGACTGCCGTGCCAAT
CTCTACAGAGCCTACACCTGCTCCTACTCCTGCTCCTGCTTCTGCTTCTG
TGTCATCAGTTTCTGCTACGTCAGAGTCTGGTGTGTATGGGCATGCTGCA
TCTAATCTGGTTGCTGGGAACAACTTGGAGGGAGCAATCCAGCAGATTCT
TGATATGGGTGGAGGGACTTGGGATAGAGATACTGTTGTTCGTGCTCTTC
GAGCTGCTTATAATAATCCTGAGAGGGCTGTTGAATATTTATATTCTGGT
ATACCTGAGCAAGCTGAAGTTCAACCTGTGGCCCGCGCCCCTGGTAATGG
ACAAGCTGCTAACTCTCCAACTCAGATGCCACAGCCAACCCAACCGGCAC
CCGTTACTTCTAGTGGGCCAAATGCAAATCCTTTGGACCTCTTTCCTCAG
GGCCTTCCTGACGTGGGTTCAGGTGGAGCTGGCGCTGGCAGTCCTGACTT
TTTAACGTATACTTCACAGTTTCAAGTTTTGCGAACTATGGTGGCGGGCA
ACCCTCAATTTTGGAGCCCAGGGTTCAAGAATTTGGGAAAACAAAATCCT
TCACAAGTGAGGGCTTATTCAGGAACATAAGGGTGAACTCCCTTCCGCTT
TACCAATGAAACTGGTCCAAGTTGGGGGAGGGGGAAATTTGGGGGGACCA
CCTTGTGGGGGGTTAAAGGGCCCAATTCCAAATACCAATTCCCCCCCCGA
AAAAAACGTGGAAAACCCAAAAAAAAGTTTTCTTAAGGCAAAGGGGGGCC
TTTTTTACTCAACGCAATATTGATTTTGGGGGAGGGGTGTTCTCTTTTTC
CCCCCCCAAACACAAAAAGATAGGAAAGAAAAACTTTTTGCTTCGTCCTC
CACCCCTACCCCCCCCTTTTTTTTTAATAAACCCACCT
back to top