DY304308

Overview
NameDY304308
Unique NameDY304308
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1253
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304308 vs. ExPASy Swiss-Prot
Match: YBEG_SCHPO (Uncharacterized WD repeat-containing protein C17D11.16 OS=Schizosaccharomyces pombe GN=SPBC1711.16 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.815e-24
Identity = 54/131 (41.22%), Postives = 78/131 (59.54%), Query Frame = 1
Query:  412 IFGKGLGDLYYASNQMDPYXXXXXXXXXXXXXX-MTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDCPL--KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILG 795
            +F    G  Y+ + + DPY               M I P D++++ AR ED++SH+EVY+ E ++    NLYVHH  ++P FPLC+ WLD  +   D   GN++AVG+ +P IEIWDLD+ID V P  +LG
Sbjct:  105 MFSNIRGLAYHENGEKDPYITIDPQEQDDLEREEMQILPTDSLLLAARTEDNLSHVEVYVYEPTE---ENLYVHHDFLLPTFPLCLEWLDYKVGTSDNAPGNYVAVGTFDPEIEIWDLDIIDAVYPAAVLG 232          

HSP 2 Score: 26.1794 bits (56), Expect = 1.815e-24
Identity = 11/27 (40.74%), Postives = 16/27 (59.26%), Query Frame = 3
Query:  870 HTDSVPGLCLEQGVQNILANASADKTI 950
            HTD+V  L   +   N+L + SAD T+
Sbjct:  253 HTDAVLALSSNRNAHNLLVSGSADTTL 279          
BLAST of DY304308 vs. ExPASy Swiss-Prot
Match: PWP1_BOVIN (Periodic tryptophan protein 1 homolog OS=Bos taurus GN=PWP1 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.074e-19
Identity = 71/240 (29.58%), Postives = 108/240 (45.00%), Query Frame = 1
Query:  427 LGDLYYASNQMDPYXXXXXXXXXXXXXXMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDC-PLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDXXXXXXXXXXXXSRPLNIKRVVIPIPCLVFAWNKESRIFLLMPVLIKQFRIWECGSRKM*SPLGAPYKIRVQPVAWEPPFPPNSFLLGTF*SVPFVMEGGQGEF*HNSWVFQG 1143
            LG   Y SN  DPY              + I P+D +IVC R E D  +LEV++  + +    + YVHH I++ A+PL + WL+  P  D   GN++AVG+M P IE+WDLD++D ++P   LG               S   +   V      L  +WNK  R  L          +W+    K  + L A +  +VQ + +  PF   + + G++     + +    E  H  W F G
Sbjct:  115 LGLTVYGSNDQDPYVTLKDTEQYEREDFL-IKPSDNLIVCGRAEQDQCNLEVHVYNQEED---SFYVHHDILLSAYPLSVEWLNFDPSPDDSTGNYIAVGNMTPVIEVWDLDIVDSLEPVFTLGSKLSKKKKKKGKKNSSADGHTDAV------LDLSWNKLVRNVLASASADNTVILWDMSLGKPAASL-AVHTDKVQTLQFH-PFEAQTLISGSYDKSVALYDCRSPEESHRMWRFSG 342          
BLAST of DY304308 vs. ExPASy Swiss-Prot
Match: PWP1_YEAST (Periodic tryptophan protein 1 OS=Saccharomyces cerevisiae GN=PWP1 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.140e-19
Identity = 46/120 (38.33%), Postives = 71/120 (59.17%), Query Frame = 1
Query:  511 MTINPNDAVIVCARNEDDVSHLEVYI-------------LEESDGGDPN----------LYVHHHIIIPAFPLCMAWLDCPL--KDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILG 795
            + + P+D +++ AR EDDVS+L++Y+             +EE D  DP+          LYVHH +++PAFPLC+ WLD  +     E  N+ A+G+ +P IEIW+LD +D+  P +ILG
Sbjct:  138 LQVYPSDNLVLAARTEDDVSYLDIYVYDDGAGFHSSDIPVEEGDEADPDVARGLVRDPALYVHHDLMLPAFPLCVEWLDYKVGSNSEEAANYAAIGTFDPQIEIWNLDCVDKAFPDMILG 257          

HSP 2 Score: 24.6386 bits (52), Expect = 1.140e-19
Identity = 10/27 (37.04%), Postives = 18/27 (66.67%), Query Frame = 3
Query:  870 HTDSVPGLCLEQGVQNILANASADKTI 950
            HTD+V  +   +  +++LA+ SAD T+
Sbjct:  285 HTDAVLSMAHNKYFRSVLASTSADHTV 311          
BLAST of DY304308 vs. ExPASy Swiss-Prot
Match: PWP1_HUMAN (Periodic tryptophan protein 1 homolog OS=Homo sapiens GN=PWP1 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 2.392e-19
Identity = 70/240 (29.17%), Postives = 108/240 (45.00%), Query Frame = 1
Query:  427 LGDLYYASNQMDPYXXXXXXXXXXXXXXMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDC-PLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDXXXXXXXXXXXXSRPLNIKRVVIPIPCLVFAWNKESRIFLLMPVLIKQFRIWECGSRKM*SPLGAPYKIRVQPVAWEPPFPPNSFLLGTF*SVPFVMEGGQGEF*HNSWVFQG 1143
            LG   Y SN  DPY              + I P+D +IVC R E D  +LEV++  + +    + YVHH I++ A+PL + WL+  P  D   GN++AVG+M P IE+WDLD++D ++P   LG               S   +   V      L  +WNK  R  L          +W+    K  + L A +  +VQ + +  PF   + + G++     + +    +  H  W F G
Sbjct:  116 LGLTVYGSNDQDPYVTLKDTEQYEREDFL-IKPSDNLIVCGRAEQDQCNLEVHVYNQEED---SFYVHHDILLSAYPLSVEWLNFDPSPDDSTGNYIAVGNMTPVIEVWDLDIVDSLEPVFTLGSKLSKKKKKKGKKSSSAEGHTDAV------LDLSWNKLIRNVLASASADNTVILWDMSLGKPAASL-AVHTDKVQTLQFH-PFEAQTLISGSYDKSVALYDCRSPDESHRMWRFSG 343          
BLAST of DY304308 vs. ExPASy Swiss-Prot
Match: PWP1_MOUSE (Periodic tryptophan protein 1 homolog OS=Mus musculus GN=Pwp1 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 5.328e-19
Identity = 69/240 (28.75%), Postives = 106/240 (44.17%), Query Frame = 1
Query:  427 LGDLYYASNQMDPYXXXXXXXXXXXXXXMTINPNDAVIVCARNEDDVSHLEVYILEESDGGDPNLYVHHHIIIPAFPLCMAWLDC-PLKDREKGNFMAVGSMEPAIEIWDLDVIDEVQPHVILGGIDXXXXXXXXXXXXSRPLNIKRVVIPIPCLVFAWNKESRIFLLMPVLIKQFRIWECGSRKM*SPLGAPYKIRVQPVAWEPPFPPNSFLLGTF*SVPFVMEGGQGEF*HNSWVFQG 1143
            LG   Y SN  DPY              + I P D +IVC R E +  +LEV++  + +    + YVHH I++ A+PL + WL+  P  D   GN++AVG+M P IE+WDLD++D ++P   LG               S   +   V      L  +WNK  R  L          +W+    K  + L A +  +VQ + +  PF   + + G++     + +       H  W F G
Sbjct:  115 LGLTVYGSNDQDPYVTLKDTEQYEHEDFL-IKPTDNLIVCGRAEQEQCNLEVHVYNQEE---ESFYVHHDILLSAYPLSVEWLNFDPSPDASTGNYIAVGNMTPVIEVWDLDIVDSLEPVFTLGSKLSKKKKKKGKKSSSAEGHTDAV------LDLSWNKTVRNVLASASADSTVVLWDLSVGKSVARLTA-HTDKVQTLQFH-PFEAQTLISGSYDKSVALYDCRDPSQNHRQWRFSG 342          
The following BLAST results are available for this feature:
BLAST of DY304308 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
YBEG_SCHPO1.815e-2441.22Uncharacterized WD repeat-containing protein C17D1... [more]
PWP1_BOVIN1.074e-1929.58Periodic tryptophan protein 1 homolog OS=Bos tauru... [more]
PWP1_YEAST1.140e-1938.33Periodic tryptophan protein 1 OS=Saccharomyces cer... [more]
PWP1_HUMAN2.392e-1929.17Periodic tryptophan protein 1 homolog OS=Homo sapi... [more]
PWP1_MOUSE5.328e-1928.75Periodic tryptophan protein 1 homolog OS=Mus muscu... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAQ8YF11RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304308 ID=DY304308; Name=DY304308; organism=Citrus clementina; type=EST; length=1253bp
AAAAACTTGAACAAGCTAATTACTTAAGCTTCTCTGCAACTACAACTTAA
ATTATTTAAATTTTGGTAATTTTGAAGGATGATAGCAGCAGTATCGTGGG
TGCCCAAAGGGGCTTCGAAGGCCGTGCCTGAAGAGGCTGAGCCTCCATCG
AAGGAAGAAATTGAAGAGATTATAAACAGCGGCGCTTTGGAACATGAAAT
TGAAGATGATCGCAGTGAGGATGATGATGAAGATATGGAGGTTGAGGATG
AGGCCAAGCAGTCTGATGACGCCTCCCAAGCGGTAGCTGTCGCAAATGCA
CTTGGAAAAACTTCCAAAAGCAAGAATTCGGGGACTAAATTTGATGATAT
TACTGATGGCTTGAAGGAACTCGACATGGACCACTATGATGATGAAGATG
ATGGTGTTGAGATATTTGGCAAGGGGCTTGGGGACCTTTACTATGCAAGT
AATCAAATGGATCCCTATCTAAAGGACAAAGATGATGAGGATTCTGAAGA
TCTTGAGGACATGACCATTAATCCAAATGATGCAGTCATTGTTTGTGCAC
GTAATGAGGATGATGTCAGCCATCTCGAGGTCTATATACTTGAGGAATCA
GATGGTGGTGATCCGAATCTGTATGTTCACCATCATATCATCATTCCAGC
GTTTCCCCTTTGCATGGCATGGCTTGATTGCCCACTAAAAGACCGAGAAA
AAGGGAATTTTATGGCTGTTGGCTCAATGGAACCTGCCATCGAGATATGG
GACCTTGATGTTATTGATGAAGTACAACCGCACGTTATATTGGGTGGCAT
TGATGAGGAGAAGAAAAAAAGAAGAGTAAGAGAGGAAAGAAGTCGTCCAT
TAAATATAAAAAGGGTAGTCATACCGATTCCGTGCCTGGTCTTTGCTTGG
AACAAGGAGTCCAGAATATTCTTGCTAATGCCAGTGCTGATAAAACAATT
TAGAATATGGGAATGTGGCTCCCGGAAAATGTAATCTCCCCTTGGAGCAC
CCTACAAGATAAGGGTTCAGCCAGTTGCATGGGAACCCCCATTCCCCCCA
AATTCCTTCTTATTGGGAACCTTTTGATCCGTTCCTTTTGTCATGGAAGG
GGGGCAAGGGGAATTCTAACACAATTCCTGGGTTTTTCAAGGTGGGGCGG
TTTGTCCCCCCGGAAACCAAAAAAAAGAAGCTGGGGCAAGGGGGGGAAAC
CCAACCACCCCCCCGCAAAAACCCCAATTTTCTTTTTTCTCGTGTGTGGG
GGG
back to top