DY304316

Overview
NameDY304316
Unique NameDY304316
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304316 vs. ExPASy Swiss-Prot
Match: RS7_AVIMR (40S ribosomal protein S7 OS=Avicennia marina GN=RPS7 PE=2 SV=1)

HSP 1 Score: 324.709 bits (831), Expect = 2.996e-88
Identity = 157/190 (82.63%), Postives = 181/190 (95.26%), Query Frame = 1
Query:   64 MFSAQKKIHKDKDAEPTEFEESVAQAVFDLENTNQELKSELKDLYINSAMQIDVPGNRKAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILRPPKKGSAVQRPRSRTLTSVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLDTFAAVYRKLSGKDVVFDFPVTE 633
            M++A +KIHKDKDAEPTEFEE+VAQA+FD ENTNQE+KS+LKDLYINSA+QIDV G +KAVVIH+PYRLRK++RKIH +LVRELEKKFSGK+V+LIATRRILRPPKKGSAVQRPRSRTLT+VH+AMLED+V PAEIVGKR+RYRLDGSKIMKVFLDPK +N+TE KL+TFA VYRKLSGKDVVF+FP+TE
Sbjct:    1 MYTALQKIHKDKDAEPTEFEENVAQALFDFENTNQEIKSDLKDLYINSALQIDVSGGKKAVVIHVPYRLRKSFRKIHPRLVRELEKKFSGKEVVLIATRRILRPPKKGSAVQRPRSRTLTAVHDAMLEDIVYPAEIVGKRVRYRLDGSKIMKVFLDPKAKNDTENKLETFAGVYRKLSGKDVVFEFPLTE 190          
BLAST of DY304316 vs. ExPASy Swiss-Prot
Match: RS71_ARATH (40S ribosomal protein S7-1 OS=Arabidopsis thaliana GN=RPS7A PE=2 SV=1)

HSP 1 Score: 317.775 bits (813), Expect = 3.662e-86
Identity = 153/191 (80.10%), Postives = 178/191 (93.19%), Query Frame = 1
Query:   64 MFSAQKKIHKDKDAEPTEFEESVAQAVFDLENTNQELKSELKDLYINSAMQIDVPGNRKAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILRPPKKGSAVQRPRSRTLTSVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLDTFAAVYRKLSGKDVVFDFPVTEA 636
            MFSAQ KIHK+K  E +E +E VAQA FDLENTNQELKSELKDLY+NSA+Q+D+ G RKA+V+++PYRLRKAYRKIH +LVRELEKKFSGKDVILIATRRI+RPPKKGSA +RPR+RTLTSVHEA+L+DVVLPAEIVGKR RYRLDG+KIMKVFLDPKERNNTEYK++ F+AVY+KL+GKDVVF+FP+TEA
Sbjct:    1 MFSAQHKIHKEKGVELSELDEQVAQAFFDLENTNQELKSELKDLYVNSAVQVDISGGRKAIVVNVPYRLRKAYRKIHVRLVRELEKKFSGKDVILIATRRIVRPPKKGSAAKRPRNRTLTSVHEAILDDVVLPAEIVGKRTRYRLDGTKIMKVFLDPKERNNTEYKVEAFSAVYKKLTGKDVVFEFPITEA 191          
BLAST of DY304316 vs. ExPASy Swiss-Prot
Match: RS7_ORYSJ (40S ribosomal protein S7 OS=Oryza sativa subsp. japonica GN=RPS7 PE=2 SV=2)

HSP 1 Score: 313.923 bits (803), Expect = 5.288e-85
Identity = 148/190 (77.89%), Postives = 177/190 (93.16%), Query Frame = 1
Query:   64 MFSAQKKIHKDKDAEPTEFEESVAQAVFDLENTNQELKSELKDLYINSAMQIDVPGNRKAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILRPPKKGSAVQRPRSRTLTSVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLDTFAAVYRKLSGKDVVFDFPVTE 633
            M++A++KI KDK  EPTEFE++VAQA FDLEN NQELKS+LKDLYIN A+Q+D+PGNRKAV+I++PYRLRKAY+KIH +LVRELEKKFSGKDV+L+ATRRI+RPPKKGSAV RPR+RTLT+VH+ +LEDVV PAEIVGKR+RY LDG KIMK+FLDPKERNNTEYKLDTF++VYR+L GKDVVFD+P+TE
Sbjct:    1 MYTARRKIQKDKGLEPTEFEDTVAQAFFDLENGNQELKSDLKDLYINGAVQMDLPGNRKAVIIYVPYRLRKAYKKIHVRLVRELEKKFSGKDVVLVATRRIVRPPKKGSAVVRPRTRTLTAVHDGILEDVVYPAEIVGKRVRYHLDGRKIMKIFLDPKERNNTEYKLDTFSSVYRRLCGKDVVFDYPMTE 190          
BLAST of DY304316 vs. ExPASy Swiss-Prot
Match: RS7_BRAOL (40S ribosomal protein S7 OS=Brassica oleracea GN=RPS7 PE=2 SV=1)

HSP 1 Score: 311.227 bits (796), Expect = 3.428e-84
Identity = 150/190 (78.95%), Postives = 172/190 (90.53%), Query Frame = 1
Query:   64 MFSAQKKIHKDKDAEPTEFEESVAQAVFDLENTNQELKSELKDLYINSAMQIDVPGNRKAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILRPPKKGSAVQRPRSRTLTSVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLDTFAAVYRKLSGKDVVFDFPVTE 633
            MFSAQ KIHKDK   PTEFEE VAQA FDLENTNQELKS+LKDLYIN A+ +D+ GNRKAVVI++P+RLRKA+RKIH++LVRELEKKFSG DVI +ATRRI+RPPKKGSAVQRPR+RTLTSVHEAMLEDV  PAEIVGKR RYR+DG+KIMKV+L+PKERNNTEYKL+T   VYRKL+GKDVVF++PV +
Sbjct:    1 MFSAQNKIHKDKGVAPTEFEERVAQAFFDLENTNQELKSDLKDLYINQAVSMDIAGNRKAVVIYVPFRLRKAFRKIHSRLVRELEKKFSGNDVIFVATRRIMRPPKKGSAVQRPRNRTLTSVHEAMLEDVAYPAEIVGKRTRYRVDGTKIMKVYLEPKERNNTEYKLETMVGVYRKLTGKDVVFEYPVAD 190          
BLAST of DY304316 vs. ExPASy Swiss-Prot
Match: RS73_ARATH (40S ribosomal protein S7-3 OS=Arabidopsis thaliana GN=RPS7C PE=2 SV=2)

HSP 1 Score: 310.457 bits (794), Expect = 5.847e-84
Identity = 152/188 (80.85%), Postives = 171/188 (90.96%), Query Frame = 1
Query:   64 MFSAQKKIHKDKDAEPTEFEESVAQAVFDLENTNQELKSELKDLYINSAMQIDVPGNRKAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILRPPKKGSAVQRPRSRTLTSVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLDTFAAVYRKLSGKDVVFDFPV 627
            MFSAQ KI KDK+AEPTE EE VAQA+FDLENTNQELKSELKDLYIN A+ +D+ GNRKAVVI++P+RLRKA+RKIH +LVRELEKKFSGKDVI + TRRI+RPPKKG+AVQRPR+RTLTSVHEAMLEDV  PAEIVGKR RYRLDGSKIMKVFLD KE+NNTEYKL+T   VYRKL+GKDVVF++PV
Sbjct:    1 MFSAQNKIKKDKNAEPTECEEQVAQALFDLENTNQELKSELKDLYINQAVHMDISGNRKAVVIYVPFRLRKAFRKIHPRLVRELEKKFSGKDVIFVTTRRIMRPPKKGAAVQRPRNRTLTSVHEAMLEDVAFPAEIVGKRTRYRLDGSKIMKVFLDAKEKNNTEYKLETMVGVYRKLTGKDVVFEYPV 188          
BLAST of DY304316 vs. ExPASy Swiss-Prot
Match: RS72_ARATH (40S ribosomal protein S7-2 OS=Arabidopsis thaliana GN=RPS7B PE=2 SV=1)

HSP 1 Score: 309.301 bits (791), Expect = 1.303e-83
Identity = 151/191 (79.06%), Postives = 171/191 (89.53%), Query Frame = 1
Query:   64 MFSAQKKIHKDKDAEPTEFEESVAQAVFDLENTNQELKSELKDLYINSAMQIDVPGNRKAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILRPPKKGSAVQRPRSRTLTSVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLDTFAAVYRKLSGKDVVFDFPVTEA 636
            M+S Q KIHKDK   PTEFEE V QA+FDLENTNQELKSELKDLYIN A+Q+D+ GNRKAVVI++P+RLRKA+RKIH +LVRELEKKFSGKDVI +ATRRI+RPPKKGSAVQRPR+RTLTSVHEAMLEDV  PAEIVGKR RYRLDG+KIMKVFLD K +N+TEYKL+T   VYRKL+GKDVVF++PV EA
Sbjct:    1 MYSGQNKIHKDKGVAPTEFEEQVTQALFDLENTNQELKSELKDLYINQAVQMDISGNRKAVVIYVPFRLRKAFRKIHLRLVRELEKKFSGKDVIFVATRRIMRPPKKGSAVQRPRNRTLTSVHEAMLEDVAYPAEIVGKRTRYRLDGTKIMKVFLDSKLKNDTEYKLETMVGVYRKLTGKDVVFEYPVIEA 191          
BLAST of DY304316 vs. ExPASy Swiss-Prot
Match: RS7_SECCE (40S ribosomal protein S7 OS=Secale cereale GN=RPS7 PE=2 SV=1)

HSP 1 Score: 307.375 bits (786), Expect = 4.950e-83
Identity = 146/190 (76.84%), Postives = 174/190 (91.58%), Query Frame = 1
Query:   64 MFSAQKKIHKDKDAEPTEFEESVAQAVFDLENTNQELKSELKDLYINSAMQIDVPGNRKAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILRPPKKGSAVQRPRSRTLTSVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLDTFAAVYRKLSGKDVVFDFPVTE 633
            M++A+KKI KDK  EP+EFE++VAQA FDLEN NQELKS++KDLYIN+A Q+DV GNRKAVVIH+PYRLRK +RKIH +LVRELEKKFSGKDV+++ATRRI+RPPKKGSAV RPR+RTLT+VH+ +LEDVV PAEIVGKR+RYRLDGSKI+K+FLDP ERNNTEYKLDTF AVYR+L GKDVV+++PV E
Sbjct:    1 MYTARKKIQKDKGLEPSEFEDTVAQAFFDLENGNQELKSDVKDLYINAAFQMDVAGNRKAVVIHVPYRLRKNFRKIHVRLVRELEKKFSGKDVVIVATRRIVRPPKKGSAVVRPRTRTLTAVHDGLLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPMERNNTEYKLDTFTAVYRRLCGKDVVYEYPVAE 190          
BLAST of DY304316 vs. ExPASy Swiss-Prot
Match: RS7_HORVU (40S ribosomal protein S7 OS=Hordeum vulgare GN=RPS7 PE=2 SV=1)

HSP 1 Score: 300.056 bits (767), Expect = 7.903e-81
Identity = 143/190 (75.26%), Postives = 175/190 (92.11%), Query Frame = 1
Query:   64 MFSAQKKIHKDKDAEPTEFEESVAQAVFDLENTNQELKSELKDLYINSAMQIDVPGNRKAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILRPPKKGSAVQRPRSRTLTSVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLDTFAAVYRKLSGKDVVFDFPVTE 633
            M++A+KKI KDK  EP+EFE++VAQA FDLEN NQELKS+LKDLYIN+A+Q+DV GNRKAVVIH+PYRLRK +RKIH +LVRELE+  SGKDV+ +ATRRI+RPPKKGSAVQRPR+RTLT+VH+ +LEDVV PAEIVGKR+RYRLDG+K++K++LDPKERNNTEYKL+TF+AVYR+L GKDVVF++PV E
Sbjct:    1 MYTARKKIQKDKGVEPSEFEDTVAQAFFDLENGNQELKSDLKDLYINTAIQMDVVGNRKAVVIHVPYRLRKPFRKIHVRLVRELER-VSGKDVVFVATRRIVRPPKKGSAVQRPRTRTLTAVHDGILEDVVYPAEIVGKRVRYRLDGAKVIKIYLDPKERNNTEYKLETFSAVYRRLCGKDVVFEYPVAE 189          
BLAST of DY304316 vs. ExPASy Swiss-Prot
Match: RS7_DANRE (40S ribosomal protein S7 OS=Danio rerio GN=rps7 PE=2 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 4.519e-52
Identity = 102/191 (53.40%), Postives = 145/191 (75.92%), Query Frame = 1
Query:   64 MFSAQKKIHKDKDAEPTEFEESVAQAVFDLENTNQELKSELKDLYINSAMQIDVPGNRKAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILRPPKKGSAVQ----RPRSRTLTSVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLDTFAAVYRKLSGKDVVFDFP 624
            MFS   KI K    +P EFE  ++QA+ +LE  N +LK++L++L+I +A +I+V G+RKA++I +P    K+++KI  +LVRELEKKFSGK V+ IA RRIL  P + S  +    RPRSRTLT+VH+A+LED+V P+EIVGKRIR +LD S+++KV LD  ++NN E+K++TFA VY+KL+GKDV+F+FP
Sbjct:    1 MFSTSAKIVKPNGEKPDEFESGISQALLELE-MNSDLKAQLRELHITAAKEIEVGGSRKAIIIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTNVHDAILEDLVFPSEIVGKRIRVKLDSSRLIKVHLDKAQQNNVEHKVETFAGVYKKLTGKDVIFEFP 190          
BLAST of DY304316 vs. ExPASy Swiss-Prot
Match: RS7_ICTPU (40S ribosomal protein S7 OS=Ictalurus punctatus GN=rps7 PE=2 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 5.902e-52
Identity = 104/191 (54.45%), Postives = 145/191 (75.92%), Query Frame = 1
Query:   64 MFSAQKKIHKDKDAEPTEFEESVAQAVFDLENTNQELKSELKDLYINSAMQIDVPGNRKAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILRPPKKGSAVQ----RPRSRTLTSVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLDTFAAVYRKLSGKDVVFDFP 624
            MFS+  KI K    +P EFE  ++QA+ +LE  N +LK++L++L I +A +I+V G+RKA++I +P    KA++KI  +LVRELEKKFSGK V+ IA RRIL  P + S  +    RPRSRTLT+VH+A+LED+V P+EIVGKRIR +LD S+++KV LD  ++NN E+K++TFA VY+KL+GKDVVF+FP
Sbjct:    1 MFSSSAKIVKANGEKPDEFESGISQALLELE-MNSDLKAQLRELNITAAKEIEVGGSRKAIIIFVPVPQLKAFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVHDAILEDLVYPSEIVGKRIRVKLDSSRLIKVHLDKAQQNNVEHKVETFAGVYKKLTGKDVVFEFP 190          
The following BLAST results are available for this feature:
BLAST of DY304316 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
RS7_AVIMR2.996e-8882.6340S ribosomal protein S7 OS=Avicennia marina GN=RP... [more]
RS71_ARATH3.662e-8680.1040S ribosomal protein S7-1 OS=Arabidopsis thaliana... [more]
RS7_ORYSJ5.288e-8577.8940S ribosomal protein S7 OS=Oryza sativa subsp. ja... [more]
RS7_BRAOL3.428e-8478.9540S ribosomal protein S7 OS=Brassica oleracea GN=R... [more]
RS73_ARATH5.847e-8480.8540S ribosomal protein S7-3 OS=Arabidopsis thaliana... [more]
RS72_ARATH1.303e-8379.0640S ribosomal protein S7-2 OS=Arabidopsis thaliana... [more]
RS7_SECCE4.950e-8376.8440S ribosomal protein S7 OS=Secale cereale GN=RPS7... [more]
RS7_HORVU7.903e-8175.2640S ribosomal protein S7 OS=Hordeum vulgare GN=RPS... [more]
RS7_DANRE4.519e-5253.4040S ribosomal protein S7 OS=Danio rerio GN=rps7 PE... [more]
RS7_ICTPU5.902e-5254.4540S ribosomal protein S7 OS=Ictalurus punctatus GN... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ8YF20RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304316 ID=DY304316; Name=DY304316; organism=Citrus clementina; type=EST; length=713bp
AAAAACCTCTCTGTTTTCTTTGGCCCCTGCTTCTTCTTCCCGAGTTTGTC
CCGATCAGTGAATATGTTTTCTGCACAGAAGAAGATTCACAAAGATAAGG
ATGCCGAACCTACTGAATTTGAGGAGTCGGTTGCTCAGGCTGTCTTTGAT
TTGGAAAATACCAATCAAGAGCTTAAAAGTGAGCTGAAGGATCTATACAT
TAATTCTGCTATGCAAATCGATGTCCCTGGTAACAGGAAAGCTGTTGTTA
TCCATATTCCATACAGATTAAGGAAGGCCTACCGTAAGATTCATACTAAG
CTTGTGAGGGAACTTGAGAAGAAGTTTAGTGGAAAGGATGTGATCTTGAT
TGCTACTAGGAGGATATTAAGACCTCCAAAGAAAGGATCTGCTGTTCAGA
GGCCCCGCAGCCGCACACTTACTTCTGTGCATGAGGCAATGCTGGAAGAC
GTTGTGTTGCCTGCTGAGATTGTTGGGAAGCGCATAAGATACCGACTGGA
TGGATCTAAGATAATGAAGGTTTTCTTGGATCCGAAGGAACGGAACAATA
CTGAGTACAAACTGGATACATTTGCTGCTGTTTACAGAAAGCTTTCGGGC
AAAGATGTTGTGTTTGATTTCCCAGTAACAGAGGCTTAAACAGATCAAAA
GTTCCATGCAACCTTTTTCAAATGTCAACCCACCAACCCACCCCCCCCCC
CCACCCCCCCCCC
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