DY304322

Overview
NameDY304322
Unique NameDY304322
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1268
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304322 vs. ExPASy Swiss-Prot
Match: TLP9_ARATH (Tubby-like F-box protein 9 OS=Arabidopsis thaliana GN=TULP9 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 2.776e-23
Identity = 62/108 (57.41%), Postives = 74/108 (68.52%), Query Frame = 2
Query:  146 MTIKSIIHDMMWRRSHRVVGDAADHDMAGGSSPTCCWANLPQELLREILAKIEAADSA-WPSRRSVVACAGVCRSWRQITKEIVKVPELSGYLTFPISVKQA--RDPL 460
            MT +S++ +M   R HRVV  AA       SS    W+ LP+ELLREIL ++E  D   WPSRR+VVACAGVCRSWR +TKEIV VPE S  LTFPIS+KQ+  RD L
Sbjct:    1 MTFRSLLQEMR-SRPHRVVHAAAS---TANSSDPFSWSELPEELLREILIRVETVDGGDWPSRRNVVACAGVCRSWRILTKEIVAVPEFSSKLTFPISLKQSGPRDSL 104          

HSP 2 Score: 74.3294 bits (181), Expect = 1.688e-12
Identity = 44/104 (42.31%), Postives = 59/104 (56.73%), Query Frame = 3
Query:  699 LRILQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNALADDGKVPSCCPQV*TWPL*RIILSLFIRKDSKKGTPLNLGNGESNF*GTKFIIHEGTTPPRRGPKKER 1010
            + + Q GPRD L+QCFIKRNR+TQ+YHLYL LT +L D+GK      ++        I+SL    D  K +   LG   SNF GTKF + +G+       +K R
Sbjct:   93 ISLKQSGPRDSLVQCFIKRNRNTQSYHLYLGLTTSLTDNGKFLLAASKLKRATCTDYIISL-RSDDISKRSNAYLGRMRSNFLGTKFTVFDGSQTGAAKMQKSR 195          
BLAST of DY304322 vs. ExPASy Swiss-Prot
Match: TLP6_ORYSJ (Tubby-like F-box protein 6 OS=Oryza sativa subsp. japonica GN=TULP6 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 6.184e-23
Identity = 58/100 (58.00%), Postives = 66/100 (66.00%), Query Frame = 2
Query:  158 SIIHDMMWRRSHRVVGDAADHDMAGGSSPTC----CWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKEIVKVPELSGYLTFPISVKQ 445
            SI    +  RSHR  G A      G +        CWA LP ELLRE+L +IE ++  WPSRR VVACAGVCRSWR ITKEIV+VPE SG LTFPIS+KQ
Sbjct:   16 SISRHSLRSRSHRGGGGAPRVAAVGPAEAAAMQQSCWAQLPPELLREVLVRIEESEVWWPSRRDVVACAGVCRSWRGITKEIVRVPEASGKLTFPISLKQ 115          

HSP 2 Score: 77.411 bits (189), Expect = 1.994e-13
Identity = 42/95 (44.21%), Postives = 58/95 (61.05%), Query Frame = 3
Query:  699 LRILQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNALADDGKVPSCCPQV*TWPL*RIILSLFIRKDSKKGTPLNLGNGESNF*GTKFIIHEGTTP 983
            + + QPGPRD  L+CFI+RNR+TQTY+LY+ LT ALADDGK      +         ++SL +  D  KG+   +G   SNF GTKF +++   P
Sbjct:  111 ISLKQPGPRDGTLKCFIRRNRTTQTYYLYIGLTEALADDGKFLLAARKCRKPTCTDYLISLDM-SDMSKGSNTYIGKLRSNFLGTKFTVYDAHPP 204          
BLAST of DY304322 vs. ExPASy Swiss-Prot
Match: TLP11_ARATH (Tubby-like F-box protein 11 OS=Arabidopsis thaliana GN=TULP11 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.378e-22
Identity = 60/104 (57.69%), Postives = 72/104 (69.23%), Query Frame = 2
Query:  146 MTIKSIIHDMMWRRSHRVVGD---AADHDMAGGSSPTCCWANLPQELLREILAKIEAADSA-WPSRRSVVACAGVCRSWRQITKEIVKVPELSGYLTFPISVKQ 445
            MT++S+I +M   R HRVV D   AA  D    SS    W+ +P+ELLREIL ++EAAD   WPSRRSVVACAGVCR WR +  E V VPE+S  LTFPIS+KQ
Sbjct:    1 MTLRSLILEMR-SRPHRVVHDLAAAAAADSTSVSSQDYRWSEIPEELLREILIRVEAADGGGWPSRRSVVACAGVCRGWRLLMNETVVVPEISSKLTFPISLKQ 103          

HSP 2 Score: 83.9593 bits (206), Expect = 2.130e-15
Identity = 48/105 (45.71%), Postives = 61/105 (58.10%), Query Frame = 3
Query:  699 LRILQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNALADDGKVPSCCPQV*TWPL*RIILSLFIRKDSKKGTPLNLGNGESNF*GTKFIIHEGTTPPRRGPKKERK 1013
            + + QPGPRD L+QCFIKRNR TQ+YHLYL LTN+L DDGK      ++        I+SL    D  + +   +G   SNF GTKF + +G   P  G  K RK
Sbjct:   99 ISLKQPGPRDSLVQCFIKRNRITQSYHLYLGLTNSLTDDGKFLLAACKLKHTTCTDYIISL-RSDDMSRRSQAYVGKVRSNFLGTKFTVFDGNLLPSTGAAKLRK 202          
BLAST of DY304322 vs. ExPASy Swiss-Prot
Match: TLP3_ARATH (Tubby-like F-box protein 3 OS=Arabidopsis thaliana GN=TULP3 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.523e-21
Identity = 51/87 (58.62%), Postives = 66/87 (75.86%), Query Frame = 2
Query:  185 RSHRVVGDAADHDMAGGSSPTCCWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKEIVKVPELSGYLTFPISVKQ 445
            RS RVV D +    A   S   CWA++P ELLR++L +IE ++  WPSR++VV+CAGVCR+WR+I KEIV+VPELS  LTFPIS+KQ
Sbjct:   32 RSQRVVQDTSVPVDAFKQS---CWASMPPELLRDVLMRIEQSEDTWPSRKNVVSCAGVCRNWREIVKEIVRVPELSSKLTFPISLKQ 115          
BLAST of DY304322 vs. ExPASy Swiss-Prot
Match: TLP14_ORYSJ (Tubby-like F-box protein 14 OS=Oryza sativa subsp. japonica GN=TULP14 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 3.393e-21
Identity = 46/90 (51.11%), Postives = 66/90 (73.33%), Query Frame = 2
Query:  185 RSHRVVGDAADHDMAGGSSP---TCCWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKEIVKVPELSGYLTFPISVKQ 445
            RSH  V +  D   A  ++    + CWANLP ELLR+++ ++EA+++AWPSR++VVACA VCR+WR + +EIVK PE  G +TFP+S+KQ
Sbjct:   33 RSHSAVHELRDGHAAAAAADVVQSSCWANLPPELLRDVIERLEASEAAWPSRKNVVACAAVCRTWRDMCREIVKNPEFCGKITFPVSLKQ 122          
BLAST of DY304322 vs. ExPASy Swiss-Prot
Match: TLP11_ORYSJ (Tubby-like F-box protein 11 OS=Oryza sativa subsp. japonica GN=TULP11 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.873e-20
Identity = 44/65 (67.69%), Postives = 52/65 (80.00%), Query Frame = 2
Query:  251 CWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKEIVKVPELSGYLTFPISVKQ 445
            CW  LP ELLRE+LA++E ++  WP RR VVACAGVCRSWR I +EIV+ PE SG LTFPIS+KQ
Sbjct:   54 CWTQLPPELLREVLARVEESEGWWPRRRDVVACAGVCRSWRGIVREIVRTPEASGNLTFPISLKQ 118          

HSP 2 Score: 73.1738 bits (178), Expect = 3.760e-12
Identity = 41/95 (43.16%), Postives = 56/95 (58.95%), Query Frame = 3
Query:  699 LRILQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNALADDGKVPSCCPQV*TWPL*RIILSLFIRKDSKKGTPLNLGNGESNF*GTKFIIHEGTTP 983
            + + QPGPRD  ++CFI RNR+TQTY+LY+ LT+AL DDGK      +         ++SL +  D  K T   +G   SNF GTKF I++   P
Sbjct:  114 ISLKQPGPRDAPMKCFIVRNRTTQTYYLYIGLTDALTDDGKFLLAARKCRRTTCTEYLISLDM-NDISKRTDSYVGKLRSNFLGTKFTIYDAHPP 207          
BLAST of DY304322 vs. ExPASy Swiss-Prot
Match: TLP13_ORYSJ (Tubby-like F-box protein 13 OS=Oryza sativa subsp. japonica GN=TULP13 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.092e-19
Identity = 41/65 (63.08%), Postives = 56/65 (86.15%), Query Frame = 2
Query:  251 CWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKEIVKVPELSGYLTFPISVKQ 445
            CWA+LP ELLR+I+ ++E +++ WPSR+ VVACAGVCR+WR++ KEIVK PEL G +TFPIS++Q
Sbjct:   52 CWASLPPELLRDIIERLEESEATWPSRKHVVACAGVCRTWREMCKEIVKNPELCGKITFPISLRQ 116          

HSP 2 Score: 69.707 bits (169), Expect = 4.158e-11
Identity = 41/96 (42.71%), Postives = 59/96 (61.46%), Query Frame = 3
Query:  699 LRILQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNA-LADDGKVPSCCPQV*TWPL*RIILSLFIRKDSKKGTPLNLGNGESNF*GTKFIIHEGTTP 983
            + + QPGPRD  +QCFI+R++STQTY+LYLSL +A L D+GK      +         ++S+     S + T  N+G   SNF GTKF+I++  TP
Sbjct:  112 ISLRQPGPRDGTMQCFIRRDKSTQTYYLYLSLGSAVLVDNGKFLLSAKRNWHATCTEYVISMNANNLS-RSTNTNIGKLRSNFLGTKFVIYDTHTP 206          
BLAST of DY304322 vs. ExPASy Swiss-Prot
Match: TLP1_ARATH (Tubby-like F-box protein 1 OS=Arabidopsis thaliana GN=TULP1 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 2.432e-19
Identity = 41/64 (64.06%), Postives = 54/64 (84.38%), Query Frame = 2
Query:  254 WANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKEIVKVPELSGYLTFPISVKQ 445
            WANLP ELLR+++ ++E ++S WP+RR VVACA VCRSWR + KEIV+ PELSG +TFP+S+KQ
Sbjct:   57 WANLPPELLRDVIKRLEESESVWPARRHVVACASVCRSWRDMCKEIVQSPELSGKITFPVSLKQ 120          
BLAST of DY304322 vs. ExPASy Swiss-Prot
Match: TLP6_ARATH (Tubby-like F-box protein 6 OS=Arabidopsis thaliana GN=TULP6 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 5.417e-19
Identity = 41/64 (64.06%), Postives = 53/64 (82.81%), Query Frame = 2
Query:  254 WANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKEIVKVPELSGYLTFPISVKQ 445
            W +LP ELL +I+ +IE+  S WP RR VVACA VC+SWR++TKE+VKVPELSG +TFPIS++Q
Sbjct:   69 WVDLPPELLLDIIQRIESEQSLWPGRRDVVACASVCKSWREMTKEVVKVPELSGLITFPISLRQ 132          
BLAST of DY304322 vs. ExPASy Swiss-Prot
Match: TLP2_ARATH (Tubby-like F-box protein 2 OS=Arabidopsis thaliana GN=TULP2 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.059e-18
Identity = 47/113 (41.59%), Postives = 70/113 (61.95%), Query Frame = 2
Query:  146 MTIKSIIHDMM-------------WRRSHRVVGDAADHDMAGGSSPTCCWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKEIVKVPELSGYLTFPISVKQ 445
            M++KSI+ D+              W +S  +  D     +   + P   WA+LP ELL +I+ ++E +++AWP+R +VV+CA VC+SWR IT EIV++PE  G LTFPIS+KQ
Sbjct:    1 MSLKSILRDLKEVRDGLGGISKRSWSKSSHIAPDQTTPPL--DNIPQSPWASLPPELLHDIIWRVEESETAWPARAAVVSCASVCKSWRGITMEIVRIPEQCGKLTFPISLKQ 111          
The following BLAST results are available for this feature:
BLAST of DY304322 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
TLP9_ARATH2.776e-2357.41Tubby-like F-box protein 9 OS=Arabidopsis thaliana... [more]
TLP6_ORYSJ6.184e-2358.00Tubby-like F-box protein 6 OS=Oryza sativa subsp. ... [more]
TLP11_ARATH1.378e-2257.69Tubby-like F-box protein 11 OS=Arabidopsis thalian... [more]
TLP3_ARATH1.523e-2158.62Tubby-like F-box protein 3 OS=Arabidopsis thaliana... [more]
TLP14_ORYSJ3.393e-2151.11Tubby-like F-box protein 14 OS=Oryza sativa subsp.... [more]
TLP11_ORYSJ2.873e-2067.69Tubby-like F-box protein 11 OS=Oryza sativa subsp.... [more]
TLP13_ORYSJ1.092e-1963.08Tubby-like F-box protein 13 OS=Oryza sativa subsp.... [more]
TLP1_ARATH2.432e-1964.06Tubby-like F-box protein 1 OS=Arabidopsis thaliana... [more]
TLP6_ARATH5.417e-1964.06Tubby-like F-box protein 6 OS=Arabidopsis thaliana... [more]
TLP2_ARATH2.059e-1841.59Tubby-like F-box protein 2 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ8YG02RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304322 ID=DY304322; Name=DY304322; organism=Citrus clementina; type=EST; length=1268bp
TGCTGCTCTCGACCCTAATCTCTATCTGAATTCTCATCATCTCTCAAGTA
TTCTTCAGTCACCCAACAACCTCACCAACAAATCATAAAGCCTTCTCAAA
ATAAATAAATATTGAAATTAGAATTAAATCTCGACGGCTTCGTGTATGAC
AATAAAAAGCATAATTCATGACATGATGTGGCGGAGGTCGCACCGCGTGG
TCGGCGACGCGGCGGACCACGACATGGCCGGCGGCTCTTCTCCTACGTGC
TGCTGGGCGAACCTGCCGCAGGAGCTGCTGAGAGAGATTCTGGCCAAAAT
CGAGGCGGCGGATAGCGCGTGGCCGTCACGGAGAAGCGTTGTCGCGTGCG
CTGGAGTTTGTCGGAGCTGGAGACAGATCACTAAAGAGATTGTCAAAGTT
CCTGAACTTTCCGGTTACTTGACTTTCCCCATCTCCGTCAAACAGGCAAG
AGATCCCTTACAAAATGATGTCAGTTACATCAAACTACAGAGTTGCACCA
GACGAGCACAGAGTTGTATGAGGTAAACCACACTTAGCTTGTTTGGTGCA
ACTCTGCGGTTGACGTAACTTACATGATTATGTTAAGGATCAAGGCCCAT
CTCTGCAAATCATATTATTCTGACAATTTTTCGGTACTGAGTTTCATGAT
AAGGTTGTTGTTTAGAATATTCCTCTAATGCATTGCGAAATCGTGTGGCT
CCGTATCTTGCAGCCTGGTCCAAGGGATTATCTCCTCCAGTGCTTTATAA
AGCGAAATCGGTCCACCCAAACATATCACCTTTACCTCAGTTTAACTAAT
GCACTAGCAGACGATGGAAAGGTTCCTTCTTGCTGCCCCCAAGTGTAGAC
GTGGCCCCTGTAAAGAATAATATTATCCCTTTTCATTCGGAAGGATAGTA
AAAAGGGAACACCCCTTAATCTTGGGAACGGAGAATCAAATTTTTAAGGA
ACCAAGTTCATAATCCATGAAGGGACAACCCCCCCCAGGCGGGGACCCAA
AAAGGAAAGAAAATTCCCTCCCCAAAAAAAACCAAATTTTGAAAAAAAGT
TTCGCTCCCGAAAACCCTTTTGGGGAAACATTCTTGTGTGCTCCAATCCC
CCAATAAAAATTAAAAGGGTTTGGGGGTTCCGGGGGGGTCCCTAGGGAAA
AAATGGGGGGTTGGGGTTAGGGGAAAATTTCTTCTTCTTGCCGTCCTCCG
CGGTATTTTGTAAAATTCTGTGGGGAGGAAGGAGAAGTCCCCCCCCCCCC
CCCACCCCCACAAAAAAA
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