DY304359

Overview
NameDY304359
Unique NameDY304359
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1195
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY304359 vs. ExPASy Swiss-Prot
Match: RF2A_ORYSJ (Transcription factor RF2a OS=Oryza sativa subsp. japonica GN=RF2a PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.104e-17
Identity = 49/104 (47.12%), Postives = 67/104 (64.42%), Query Frame = 3 
Query:  417 AAASNSSDRIVDPKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIQRLR 728
            +AA  +   +VDPKR KRI ANRQSA RS+ RK++YI+ELER V +LQ E + LS ++A L      L  +NS LK R+  + Q    +DA  + LK E+QRL+
Sbjct:  170 SAAKLAELALVDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATTLSAQLALLQRDTSGLTTENSELKLRLQTMEQQVHLQDALNDTLKSEVQRLK 273
[Close]
BLAST of DY304359 vs. ExPASy Swiss-Prot
Match: RF2B_ORYSJ (Transcription factor RF2b OS=Oryza sativa subsp. japonica GN=RF2b PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 6.122e-17
Identity = 45/94 (47.87%), Postives = 64/94 (68.09%), Query Frame = 3 
Query:  447 VDPKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIQRLR 728
            +DPKR KRILANRQSA RS+ RK +YI+ELER V +LQ E + LS ++         L+ +N+ LK R+ A+ Q    +DA  +ALK+E++RL+
Sbjct:  131 IDPKRAKRILANRQSAARSKERKARYITELERKVQTLQTEATTLSAQLTLFQRDTTGLSAENAELKIRLQAMEQQAQLRDALNDALKQELERLK 224
[Close]
BLAST of DY304359 vs. ExPASy Swiss-Prot
Match: POF21_ARATH (Probable transcription factor PosF21 OS=Arabidopsis thaliana GN=POSF21 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 8.841e-16
Identity = 46/95 (48.42%), Postives = 60/95 (63.16%), Query Frame = 3 
Query:  444 IVDPKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIQRLR 728
            ++DPKR KRI ANRQSA RS+ RK +YI ELER V +LQ E + LS ++  L      L V+N+ LK R+  + Q    +D   EALK EIQ L+
Sbjct:  199 LIDPKRAKRIWANRQSAARSKERKTRYIFELERKVQTLQTEATTLSAQLTLLQRDTNGLTVENNELKLRLQTMEQQVHLQDELNEALKEEIQHLK 293
The following BLAST results are available for this feature:
BLAST of DY304359 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RF2A_ORYSJ2.104e-1747.12Transcription factor RF2a OS=Oryza sativa subsp. j... [more]
RF2B_ORYSJ6.122e-1747.87Transcription factor RF2b OS=Oryza sativa subsp. j... [more]
POF21_ARATH8.841e-1648.42Probable transcription factor PosF21 OS=Arabidopsi... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAQ8YH17RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304359 ID=DY304359; Name=DY304359; organism=Citrus clementina; type=EST; length=1195bp
CTTCATGGGTGGACGAGTTTCTTGACTTCTCGTCGGCGAGAAGGGGGACT
CACCGGCGGTCGGTCAGCGACTCGATAACGTACCTTGAGGCGCCAATGCT
GGACGAGTGTCGTGGGGCGGGTGCGGCTCCCGGGTCGGGGTCGGGGTCGG
GGTCGGGAAATATTACTAACAGTAATCATCACGAGTTTGATAAGTTCGAT
GATGAGCAGTTTATGTCTATGTTCACTGATGATTTGCCTAATGCTACCGT
GCCTCCCACATTGTCTTCCTCTAACCCTTCTACACCGTCTGATCATAATA
GCATCAATGACGAGAAAGATGCACCGTCTGATCAGAAACAGCAGACGGTG
AGGAATGAGTCCGACGAGGTGCAAAGCCGGTGCAAAACTGAAGCTCAAGG
CCCACCACACGGCGCCGCGGCAGCAAGTAATTCTTCTGATCGGATAGTTG
ATCCCAAGAGGGTGAAGAGAATCTTGGCGAATAGGCAGTCAGCGCAAAGA
TCACGAGTGAGGAAACTACAATACATATCGGAGCTTGAACGAAGTGTTAC
TTCATTACAGGCTGAAGTCTCAGTTTTGTCGCCACGTGTCGCATTTCTGG
ATCACCAAAGGTTGCTTCTGAATGTCGACAACAGTGCTCTTAAGCAAAGA
ATCGCTGCATTGGCCCAAGACAAAATATTCAAAGATGCTCATCAAGAAGC
CCTGAAGAGAGAAATACAGAGATTGAGGCAAGTGTATCACCAACAAAACC
TCAAAAAGATGGAAAATGGAGCCTCACCAGCACCAACACAAGCAGCTGAA
GTCAGAGTTTCAGTGGAAAAAGAGCAGCTTCTCAATGTTTGATCAAATCC
CATTTCAGGATTCCATCTCCCATTTAGTTTGTTTAAAACCTGATTAAGGA
TTATTTGCGAATGAAGAAATTTTCAAGCTGCTTGGCTGCCTGCCTTGCCA
ATATAAATTTATGGTATTTGTAAATTTCGACTGGTTTGCAACATTAATTA
CCGAATTTTATGGGGAAATGTTGAGTTCAAATTTTAGGAAGGGAAATTTG
GCTTCTTGGGTTTTTGGGAACTCCGGAAAAACTGAAAGCCCACCCGTTTC
CCCCCTGAAAACTGACGGGGAGAGCCCCTTTCAAAATTCCTTGTGGGGAA
ACACTCTCAAAAAAATAACAATTTTTTTGGTTTTTTTCCCCGGGG
back to top