DY304366
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY304366 vs. ExPASy Swiss-Prot
Match: PTBP1_ARATH (Polypyrimidine tract-binding protein homolog 1 OS=Arabidopsis thaliana GN=PTB PE=2 SV=1) HSP 1 Score: 435.647 bits (1119), Expect = 2.913e-121 Identity = 226/307 (73.62%), Postives = 249/307 (81.11%), Query Frame = 2 Query: 116 MXXXXQPQFRYTQTPSKVLHLRNLPWECIEEELVELCKPFGKIVNTKCNVGANRNQAFVEFADLNQAISMVSYYASSSEPAQVRGKTVYIQYSNRHEIVNNKSPGDVPGNVLLVTIEGVEAGDVSIDVIHLVFSAFGFVHKIATFEKAAGFQALIQFTDAETASSARNALDGRSIPRYLLPEHVGSCHLRISYSAHTDLNIKFQSHRSRDYTNPYLPVNPTAIXGVMQPTIGPDGKKKELESNVLLGF--N*KYAVCCPSRPSYHIIFRLWDISEISQI*EKWVEPRLGFHILTLQLPPLAKNLLEG 1030 M Q QFRYTQTPSKV+HLRNLPWEC+EEEL++LCK FGKIVNTK NVGANRNQAFVEFADLNQAISMVSYYASSSEPAQ+RGKTVYIQYSNRHEIVNN+SPGDVPGNVLLVT EGVE+ +VSIDVIHLVFSAFGFVHKIATFEKAAGFQAL+QFTD ETAS+AR+ALDGRSIPRYLL HVGSC LR+SYSAHTDLNIKFQSHRSRDYTNPYLPVN TA+ G MQP +G DGKK E +SNVLLG N +YAV + H +F + + I EK + + +AK LEG Sbjct: 1 MSSSGQTQFRYTQTPSKVVHLRNLPWECVEEELIDLCKRFGKIVNTKSNVGANRNQAFVEFADLNQAISMVSYYASSSEPAQIRGKTVYIQYSNRHEIVNNQSPGDVPGNVLLVTFEGVESHEVSIDVIHLVFSAFGFVHKIATFEKAAGFQALVQFTDVETASAARSALDGRSIPRYLLSAHVGSCSLRMSYSAHTDLNIKFQSHRSRDYTNPYLPVNQTAMDGSMQPALGADGKKVESQSNVLLGLIENMQYAV---TVDVLHTVFSAYGTVQKIAIFEKNGSTQALIQYSDIPTAAMAKEALEG 304 HSP 2 Score: 96.6709 bits (239), Expect = 3.208e-19 Identity = 56/107 (52.34%), Postives = 70/107 (65.42%), Query Frame = 2 Query: 443 NVLLVTIEGVEAGDVSIDVIHLVFSAFGFVHKIATFEKAAGFQALIQFTDAETASSARNALDGRSIPRYLLPEHVGSCHLRISYSAHTDLNIKFQSHRSRDYTNPYL 763 NVLL IE ++ V++DV+H VFSA+G V KIA FEK QALIQ++D TA+ A+ AL+G I G C LR+SYS HTDLN+K S +SRDYT P L Sbjct: 243 NVLLGLIENMQYA-VTVDVLHTVFSAYGTVQKIAIFEKNGSTQALIQYSDIPTAAMAKEALEGHCI------YDGGYCKLRLSYSRHTDLNVKAFSDKSRDYTLPDL 342
BLAST of DY304366 vs. ExPASy Swiss-Prot
Match: PTBP2_ARATH (Polypyrimidine tract-binding protein homolog 2 OS=Arabidopsis thaliana GN=At5g53180 PE=2 SV=1) HSP 1 Score: 390.963 bits (1003), Expect = 4.668e-111 Identity = 196/251 (78.09%), Postives = 215/251 (85.66%), Query Frame = 2 Query: 131 QPQFRYTQTPSKVLHLRNLPWECIEEELVELCKPFGKIVNTKCNVGANRNQAFVEFADLNQAISMVSYYASSSEPAQVRGKTVYIQYSNRHEIVNNKSPGDVPGNVLLVTIEGVEAGDVSIDVIHLVFSAFGFVHKIATFEKAAGFQALIQFTDAETASSARNALDGRSIPRYLLPEHVGSCHLRISYSAHTDLNIKFQSHRSRDYTNPYLPVNPTAIXGVMQPTIGPDGKKKELESNVLLGF--N*KYAV 877 QPQFRYTQ PSKVLHLRNLPWEC EEEL+EL KPFG +VNTKCNVGANRNQAF+EF DLNQAI M+SYYASSSEPAQVRGKTVY+QYSNR EIVNNK+ DV GNVLLVTIEG +A VSIDV+HLVFSAFGFVHKI TFEK AG+QAL+QFTDAETA++A+ ALDGRSIPRYLL E VG C L+I+YSAHTDL +KFQSHRSRDYTNPYLPV P+AI Q +G DGKK E ESNVLL N +YAV Sbjct: 7 QPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGTVVNTKCNVGANRNQAFIEFEDLNQAIQMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVVGNVLLVTIEGDDARMVSIDVLHLVFSAFGFVHKITTFEKTAGYQALVQFTDAETATAAKLALDGRSIPRYLLAETVGQCSLKITYSAHTDLTVKFQSHRSRDYTNPYLPVAPSAIDSTGQVAVGVDGKKMEPESNVLLASIENMQYAV 257 HSP 2 Score: 33.4982 bits (75), Expect = 4.668e-111 Identity = 17/47 (36.17%), Postives = 25/47 (53.19%), Query Frame = 1 Query: 910 FPPLGHFRNFPNLRKMGGTQARIPYSDLTTAPIGKKSLGGNPHFNKG 1050 F G + K GG QA I YSD+ TA + K++L G+ ++ G Sbjct: 266 FAAFGEVQKIAMFDKNGGVQALIQYSDVQTAVVAKEALEGHCIYDGG 312 HSP 3 Score: 100.908 bits (250), Expect = 1.701e-20 Identity = 60/123 (48.78%), Postives = 77/123 (62.60%), Query Frame = 2 Query: 443 NVLLVTIEGVEAGDVSIDVIHLVFSAFGFVHKIATFEKAAGFQALIQFTDAETASSARNALDGRSIPRYLLPEHVGSCHLRISYSAHTDLNIKFQSHRSRDYTNPYLPVNPTAIXGVMQPTIG 811 NVLL +IE ++ V++DV+H+VF+AFG V KIA F+K G QALIQ++D +TA A+ AL+G I G C L I+YS HTDL+IK + RSRDYT P PV P V P G Sbjct: 244 NVLLASIENMQYA-VTLDVLHMVFAAFGEVQKIAMFDKNGGVQALIQYSDVQTAVVAKEALEGHCI------YDGGFCKLHITYSRHTDLSIKVNNDRSRDYTMPNPPV-PMPQQPVQNPYAG 358
BLAST of DY304366 vs. ExPASy Swiss-Prot
Match: PTBP3_ARATH (Polypyrimidine tract-binding protein homolog 3 OS=Arabidopsis thaliana GN=At1g43190 PE=2 SV=1) HSP 1 Score: 145.976 bits (367), Expect = 4.610e-34 Identity = 84/206 (40.78%), Postives = 130/206 (63.11%), Query Frame = 2 Query: 161 SKVLHLRNLPWECIEEELVELCKPFGKIVNTKCNVGANRNQAFVEFADLNQAISMVSYYASSSEPAQVRGKTVYIQYSNRHEIV----NNKSPGDVPGNVLLVTIEGVEAGDVSIDVIHLVFSAFGFVHKIATFEKAAGFQALIQFTDAETASSARNALDGRSIPRYLLPEHVGSCHLRISYSAHTDLNIKFQSHRSRDYTNPYLP 766 SKV+H+RN+ E E +L++L +PFG I TK + +NQA ++ D++ A+S + ++ ++ +P +RG+ VY+Q+S+ E+ N D P +LLVTI + +++DV+H VFS +GFV K+ TF+K+AGFQALIQ+ + A+SAR AL GR+I + G C L I +S +L + + + RSRDYTNP LP Sbjct: 5 SKVVHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMQDVSSAVSALQFF-TNVQPT-IRGRNVYVQFSSHQELTTIEQNIHGREDEPNRILLVTIHHM-LYPITVDVLHQVFSPYGFVEKLVTFQKSAGFQALIQYQVQQCAASARTALQGRNI-------YDGCCQLDIQFSNLEELQVNYNNDRSRDYTNPNLP 198
BLAST of DY304366 vs. ExPASy Swiss-Prot
Match: PTBP1_RAT (Polypyrimidine tract-binding protein 1 OS=Rattus norvegicus GN=Ptbp1 PE=1 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 9.613e-32 Identity = 85/241 (35.27%), Postives = 125/241 (51.87%), Query Frame = 2 Query: 143 RYTQTPSKVLHLRNLPWECIEEELVELCKPFGKIVNTKCNVGANRNQAFVEFADLNQAISMVSYYASSSEPAQVRGKTVYIQYSNRHEIVNNKSPGDVPGNVLLVTIEGVEAGD---------------------------------VSIDVIHLVFSAFGFVHKIATFEKAAGFQALIQFTDAETASSARNALDGRSIPRYLLPEHVGSCHLRISYSAHTDLNIKFQSHRSRDYTNPYLP 766 R T PS+V+H+R LP + E E++ L PFGK+ N G +NQAF+E + A +MV+YY S + +RG+ +YIQ+SN E+ + SP L + V++G+ V++DV+H +FS FG V KI TF K FQAL+Q+ D +A A+ +LDG++I + C LRI +S T LN+K+ + +SRDYT P LP Sbjct: 51 RSTGVPSRVIHVRKLPSDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMSTEEAANTMVNYYTSVAPV--LRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNI-------YNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLP 280
BLAST of DY304366 vs. ExPASy Swiss-Prot
Match: PTBP1_MOUSE (Polypyrimidine tract-binding protein 1 OS=Mus musculus GN=Ptbp1 PE=1 SV=2) HSP 1 Score: 136.732 bits (343), Expect = 2.797e-31 Identity = 85/241 (35.27%), Postives = 124/241 (51.45%), Query Frame = 2 Query: 143 RYTQTPSKVLHLRNLPWECIEEELVELCKPFGKIVNTKCNVGANRNQAFVEFADLNQAISMVSYYASSSEPAQVRGKTVYIQYSNRHEIVNNKSPGDVPGNVLLVTIEGVEAGD---------------------------------VSIDVIHLVFSAFGFVHKIATFEKAAGFQALIQFTDAETASSARNALDGRSIPRYLLPEHVGSCHLRISYSAHTDLNIKFQSHRSRDYTNPYLP 766 R PS+V+H+R LP + E E++ L PFGK+ N G +NQAF+E A +MV+YY S + +RG+ +YIQ+SN E+ + SP V L + V++G+ V++DV+H +FS FG V KI TF K FQAL+Q+ D +A A+ +LDG++I + C LRI +S T LN+K+ + +SRDYT P LP Sbjct: 51 RSAGVPSRVIHVRKLPSDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANTMVNYYTSVAPV--LRGQPIYIQFSNHKELKTDSSPNQVRAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNI-------YNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLP 280
BLAST of DY304366 vs. ExPASy Swiss-Prot
Match: PTBP1_PIG (Polypyrimidine tract-binding protein 1 OS=Sus scrofa GN=PTBP1 PE=2 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 3.653e-31 Identity = 88/261 (33.72%), Postives = 129/261 (49.43%), Query Frame = 2 Query: 143 RYTQTPSKVLHLRNLPWECIEEELVELCKPFGKIVNTKCNVGANRNQAFVEFADLNQAISMVSYYASSSEPAQVRGKTVYIQYSNRHEIVNNKSPGDVPGNVLLVTIEGVEAGD---------------------------------VSIDVIHLVFSAFGFVHKIATFEKAAGFQALIQFTDAETASSARNALDGRSIPRYLLPEHVGSCHLRISYSAHTDLNIKFQSHRSRDYTNPYLPV--NPTAIXGVMQPTIGPDG 820 R PS+V+H+R LP + E E++ L PFGK+ N G +NQAF+E A +MV+YY S + +RG+ +YIQ+SN E+ + SP L + V++G+ V++DV+H +FS FG V KI TF K FQAL+Q+ D +A A+ +LDG++I + C LRI +S T LN+K+ + +SRDYT P LP N ++ M G G Sbjct: 52 RSAGVPSRVIHIRKLPSDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANTMVNYYTSVTPV--LRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNI-------YNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDNQPSLDQTMAAAFGAPG 301
BLAST of DY304366 vs. ExPASy Swiss-Prot
Match: PTBP1_BOVIN (Polypyrimidine tract-binding protein 1 OS=Bos taurus GN=PTBP1 PE=2 SV=1) HSP 1 Score: 135.961 bits (341), Expect = 4.771e-31 Identity = 84/241 (34.85%), Postives = 123/241 (51.04%), Query Frame = 2 Query: 143 RYTQTPSKVLHLRNLPWECIEEELVELCKPFGKIVNTKCNVGANRNQAFVEFADLNQAISMVSYYASSSEPAQVRGKTVYIQYSNRHEIVNNKSPGDVPGNVLLVTIEGVEAGD---------------------------------VSIDVIHLVFSAFGFVHKIATFEKAAGFQALIQFTDAETASSARNALDGRSIPRYLLPEHVGSCHLRISYSAHTDLNIKFQSHRSRDYTNPYLP 766 R PS+V+H+R LP + E E++ L PFGK+ N G +NQAF+E A +MV+YY S + +RG+ +YIQ+SN E+ + SP L + V++G+ V++DV+H +FS FG V KI TF K FQAL+Q+ D +A A+ +LDG++I + C LRI +S T LN+K+ + +SRDYT P LP Sbjct: 52 RSAGVPSRVIHIRKLPGDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMHTEEAANTMVNYYTSVTPV--LRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNI-------YNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLP 281
BLAST of DY304366 vs. ExPASy Swiss-Prot
Match: PTBP1_HUMAN (Polypyrimidine tract-binding protein 1 OS=Homo sapiens GN=PTBP1 PE=1 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 6.231e-31 Identity = 84/241 (34.85%), Postives = 123/241 (51.04%), Query Frame = 2 Query: 143 RYTQTPSKVLHLRNLPWECIEEELVELCKPFGKIVNTKCNVGANRNQAFVEFADLNQAISMVSYYASSSEPAQVRGKTVYIQYSNRHEIVNNKSPGDVPGNVLLVTIEGVEAGD---------------------------------VSIDVIHLVFSAFGFVHKIATFEKAAGFQALIQFTDAETASSARNALDGRSIPRYLLPEHVGSCHLRISYSAHTDLNIKFQSHRSRDYTNPYLP 766 R PS+V+H+R LP + E E++ L PFGK+ N G +NQAF+E A +MV+YY S + +RG+ +YIQ+SN E+ + SP L + V++G+ V++DV+H +FS FG V KI TF K FQAL+Q+ D +A A+ +LDG++I + C LRI +S T LN+K+ + +SRDYT P LP Sbjct: 52 RSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANTMVNYYTSVTPV--LRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNI-------YNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLP 281
BLAST of DY304366 vs. ExPASy Swiss-Prot
Match: ROD1_RAT (Regulator of differentiation 1 OS=Rattus norvegicus GN=Rod1 PE=2 SV=1) HSP 1 Score: 131.339 bits (329), Expect = 1.175e-29 Identity = 84/251 (33.47%), Postives = 126/251 (50.20%), Query Frame = 2 Query: 155 TPSKVLHLRNLPWECIEEELVELCKPFGKIVNTKCNVGANRNQAFVEFADLNQAISMVSYYASSSEPAQVRGKTVYIQYSNRHEIVNNKSPGDVPGNVLLVTIEGVEAGD-------------------------------VSIDVIHLVFSAFGFVHKIATFEKAAGFQALIQFTDAETASSARNALDGRSIPRYLLPEHVGSCHLRISYSAHTDLNIKFQSHRSRDYTNPYLPVNPTAIXGVMQPTIGP 814 +PS+VLHLR +P + E E++ L PFGK+ N G ++QAF+E A A++M++YY + +R + VYIQYSN E+ + P L + V++G+ V+++V+H +FS FG V KI TF K FQAL+Q+ D A A+ ALDG++I + C LRI +S T LN+K+ + +SRD+T LP G QP++ P Sbjct: 27 SPSRVLHLRKIPCDVTEAEVISLGLPFGKVTNLLMLKG--KSQAFLEMASEEAAVTMINYYTPVT--PHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGNLSLPGATSNEGTLLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAQYAKMALDGQNI-------YNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPT------GDGQPSLEP 260
BLAST of DY304366 vs. ExPASy Swiss-Prot
Match: ROD1_MOUSE (Regulator of differentiation 1 OS=Mus musculus GN=Rod1 PE=2 SV=1) HSP 1 Score: 131.339 bits (329), Expect = 1.175e-29 Identity = 84/251 (33.47%), Postives = 126/251 (50.20%), Query Frame = 2 Query: 155 TPSKVLHLRNLPWECIEEELVELCKPFGKIVNTKCNVGANRNQAFVEFADLNQAISMVSYYASSSEPAQVRGKTVYIQYSNRHEIVNNKSPGDVPGNVLLVTIEGVEAGD-------------------------------VSIDVIHLVFSAFGFVHKIATFEKAAGFQALIQFTDAETASSARNALDGRSIPRYLLPEHVGSCHLRISYSAHTDLNIKFQSHRSRDYTNPYLPVNPTAIXGVMQPTIGP 814 +PS+VLHLR +P + E E++ L PFGK+ N G ++QAF+E A A++M++YY + +R + VYIQYSN E+ + P L + V++G+ V+++V+H +FS FG V KI TF K FQAL+Q+ D A A+ ALDG++I + C LRI +S T LN+K+ + +SRD+T LP G QP++ P Sbjct: 27 SPSRVLHLRKIPCDVTEAEVISLGLPFGKVTNLLMLKG--KSQAFLEMASEEAAVTMINYYTPVT--PHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGNLSLPGATANEGTLLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAQYAKMALDGQNI-------YNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPT------GDGQPSLEP 260 The following BLAST results are available for this feature:
BLAST of DY304366 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 18
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >DY304366 ID=DY304366; Name=DY304366; organism=Citrus clementina; type=EST; length=1277bpback to top |